Wall clock time and date at job start Mon Mar 30 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00293 * 2 1 4 4 O 1.20827 * 119.99954 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00371 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.47236 * 180.02562 * 5 3 2 7 7 N 1.46505 * 109.47105 * 179.97438 * 6 5 3 8 8 C 1.36937 * 120.00124 * 269.70898 * 7 6 5 9 9 H 1.07994 * 120.00081 * 321.93015 * 8 7 6 10 10 C 1.38809 * 119.99639 * 141.93408 * 8 7 6 11 11 N 1.31623 * 119.99734 * 157.20426 * 10 8 7 12 12 Si 1.86804 * 120.00267 * 337.19540 * 10 8 7 13 13 H 1.48501 * 109.46579 * 95.70086 * 12 10 8 14 14 H 1.48495 * 109.47150 * 215.70052 * 12 10 8 15 15 H 1.48493 * 109.47026 * 335.70446 * 12 10 8 16 16 C 1.46506 * 119.99655 * 89.70857 * 7 6 5 17 17 C 1.53001 * 109.46908 * 90.00080 * 16 7 6 18 18 C 1.53781 * 113.60969 * 184.99649 * 17 16 7 19 19 C 1.53784 * 87.17179 * 220.06322 * 18 17 16 20 20 F 1.39899 * 113.61385 * 139.94641 * 19 18 17 21 21 F 1.39907 * 113.61504 * 270.84418 * 19 18 17 22 22 C 1.53780 * 87.08018 * 25.39232 * 19 18 17 23 23 H 1.08999 * 109.47092 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46807 * 299.99685 * 1 2 3 25 25 H 1.09000 * 109.47519 * 59.99440 * 1 2 3 26 26 H 1.08993 * 109.47120 * 59.99436 * 5 3 2 27 27 H 1.09008 * 109.46551 * 299.99627 * 5 3 2 28 28 H 1.09008 * 109.47443 * 60.00041 * 6 5 3 29 29 H 1.08996 * 109.47373 * 299.99851 * 6 5 3 30 30 H 0.97002 * 119.99873 * 180.02562 * 11 10 8 31 31 H 1.08995 * 109.46744 * 330.00207 * 16 7 6 32 32 H 1.08997 * 109.47047 * 209.99969 * 16 7 6 33 33 H 1.08995 * 112.90942 * 316.25270 * 17 16 7 34 34 H 1.08997 * 113.61139 * 105.47416 * 18 17 16 35 35 H 1.08997 * 113.61899 * 334.65257 * 18 17 16 36 36 H 1.09002 * 113.61463 * 89.11784 * 22 19 18 37 37 H 1.08998 * 113.61386 * 219.93596 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7419 0.0002 7 7 5.4632 2.8186 0.0002 8 6 6.1467 2.8598 1.1861 9 1 5.7491 3.4203 2.0193 10 6 7.3505 2.1812 1.3173 11 7 8.2180 2.5516 2.2353 12 14 7.7391 0.7423 0.1912 13 1 8.5559 1.2172 -0.9546 14 1 8.4974 -0.2868 0.9468 15 1 6.4732 0.1530 -0.3138 16 6 6.1950 2.8511 -1.2686 17 6 6.3743 4.3030 -1.7168 18 6 7.0258 4.4438 -3.1026 19 6 7.8200 5.6272 -2.5248 20 9 9.1518 5.6699 -2.9510 21 9 7.1668 6.8575 -2.6553 22 6 7.6355 4.9752 -1.1443 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 3.9557 0.7808 -0.8907 27 1 3.9564 0.7805 0.8893 28 1 3.6108 3.2355 0.8907 29 1 3.6101 3.2366 -0.8893 30 1 9.0594 2.0776 2.3267 31 1 5.6337 2.3038 -2.0258 32 1 7.1729 2.3884 -1.1359 33 1 5.4694 4.8988 -1.5971 34 1 6.3254 4.7296 -3.8873 35 1 7.6491 3.5939 -3.3805 36 1 8.4253 4.2699 -0.8854 37 1 7.4287 5.6901 -0.3479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879471549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:22 Heat of formation + Delta-G solvation = -145.379756 kcal Electronic energy + Delta-G solvation = -22237.208757 eV Core-core repulsion = 18459.056746 eV Total energy + Delta-G solvation = -3778.152011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.45370 -46.79781 -40.18575 -38.11899 -36.44133 -35.41317 -32.16992 -30.65213 -27.85345 -27.02583 -25.76672 -24.62125 -22.79087 -21.21284 -19.95023 -19.45614 -17.51666 -17.29543 -16.66803 -16.35712 -16.23649 -16.07985 -15.82337 -15.28525 -14.34340 -14.07747 -13.89628 -13.67241 -13.41329 -13.11121 -13.06353 -12.82283 -12.59488 -12.21037 -12.20371 -12.01276 -11.67974 -11.46699 -11.16011 -10.94621 -10.74649 -10.68905 -10.33503 -10.20109 -10.15302 -10.03634 -9.81602 -9.64544 -8.63968 -7.02787 -6.11637 -3.55278 2.49018 2.95450 3.19060 3.37607 3.39069 3.86278 4.21797 4.38615 4.57668 4.76793 4.84312 5.06904 5.11453 5.14657 5.17680 5.32644 5.50838 5.60123 5.72158 5.74819 5.80900 5.88872 5.95187 6.10630 6.12875 6.31794 6.38956 6.44529 6.48809 6.58085 6.76850 6.83604 7.91171 8.00487 8.27800 8.84085 9.57095 9.96075 11.03204 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.016165 B = 0.005695 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.741152 B = 4915.685688 C = 6014.211617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.515 6.515 5 C -0.138 4.138 6 C 0.162 3.838 7 N -0.598 5.598 8 C -0.272 4.272 9 H 0.081 0.919 10 C 0.042 3.958 11 N -0.892 5.892 12 Si 0.867 3.133 13 H -0.284 1.284 14 H -0.300 1.300 15 H -0.266 1.266 16 C 0.147 3.853 17 C -0.112 4.112 18 C -0.164 4.164 19 C 0.241 3.759 20 F -0.200 7.200 21 F -0.187 7.187 22 C -0.136 4.136 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.265 0.735 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.472 -2.077 -8.661 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.307 3.693 4 O -0.402 6.402 5 C -0.178 4.178 6 C 0.036 3.964 7 N -0.318 5.318 8 C -0.401 4.401 9 H 0.099 0.901 10 C -0.159 4.159 11 N -0.532 5.532 12 Si 0.696 3.304 13 H -0.212 1.212 14 H -0.228 1.228 15 H -0.191 1.191 16 C 0.021 3.979 17 C -0.133 4.133 18 C -0.203 4.203 19 C 0.205 3.795 20 F -0.181 7.181 21 F -0.168 7.168 22 C -0.174 4.174 23 H 0.114 0.886 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.512 -1.764 -8.551 11.518 hybrid contribution 0.287 -0.723 -0.643 1.009 sum -7.224 -2.486 -9.195 11.955 Atomic orbital electron populations 1.23174 0.77417 1.03114 1.02257 1.86578 1.22751 1.34611 1.84394 1.24461 0.92708 0.80815 0.71325 1.90622 1.67498 1.36326 1.45795 1.22466 0.84803 1.04965 1.05581 1.20808 0.84459 0.90124 1.01044 1.44171 1.00489 1.84969 1.02184 1.18781 1.03559 1.26717 0.91030 0.90096 1.25472 0.96803 0.97425 0.96236 1.69870 1.07739 1.39882 1.35660 0.87103 0.78323 0.84722 0.80207 1.21237 1.22766 1.19057 1.21167 0.96934 0.92027 0.87769 1.23029 0.97316 1.01056 0.91906 1.24152 0.99628 0.96633 0.99893 1.22539 0.75362 0.81346 1.00237 1.92965 1.36710 1.96804 1.91590 1.92969 1.80562 1.46353 1.96873 1.23981 0.99888 1.00102 0.93434 0.88632 0.92129 0.92244 0.88824 0.87341 0.91753 0.93133 0.92542 0.93494 0.92239 0.88412 0.89632 0.87612 0.87216 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.43 16 2 O -0.37 -5.29 10.56 -39.23 -0.41 -5.71 16 3 C 0.46 7.50 7.96 36.01 0.29 7.79 16 4 O -0.51 -9.31 15.73 -18.75 -0.29 -9.61 16 5 C -0.14 -2.30 6.13 -27.88 -0.17 -2.47 16 6 C 0.16 2.99 4.96 -4.04 -0.02 2.97 16 7 N -0.60 -12.50 2.07 -173.24 -0.36 -12.85 16 8 C -0.27 -6.82 9.90 -15.06 -0.15 -6.97 16 9 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 10 C 0.04 1.10 5.29 -17.43 -0.09 1.01 16 11 N -0.89 -25.17 13.97 55.49 0.78 -24.39 16 12 Si 0.87 20.04 25.09 -169.99 -4.27 15.78 16 13 H -0.28 -6.37 6.68 56.52 0.38 -6.00 16 14 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 C 0.15 2.76 4.35 -4.04 -0.02 2.74 16 17 C -0.11 -1.89 3.95 -89.71 -0.35 -2.25 16 18 C -0.16 -2.36 7.42 -25.92 -0.19 -2.55 16 19 C 0.24 3.96 3.28 -25.92 -0.08 3.88 16 20 F -0.20 -3.45 17.41 2.25 0.04 -3.41 16 21 F -0.19 -3.15 17.38 2.25 0.04 -3.11 16 22 C -0.14 -2.46 7.43 -25.83 -0.19 -2.65 16 23 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 25 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 26 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.11 1.91 8.14 -51.92 -0.42 1.49 16 28 H 0.06 1.26 7.99 -51.92 -0.42 0.84 16 29 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.06 1.23 3.08 -51.93 -0.16 1.07 16 33 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.11 1.43 8.10 -51.93 -0.42 1.01 16 36 H 0.11 2.15 7.90 -51.93 -0.41 1.74 16 37 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -28.55 319.01 -4.80 -33.35 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.21 Total: 2.23 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 0.08 Total: 2.92 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.42 Total: -37.25 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.71 Total: -15.32 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.08 Total: -6.52 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.27 Total: 15.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.55 -4.80 -33.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879471549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.031 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds