Wall clock time and date at job start Mon Mar 30 2020 02:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99526 * 2 1 4 4 O 1.20825 * 120.00560 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99799 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.36744 * 57.64166 * 5 3 2 7 7 C 1.54385 * 110.40669 * 295.16854 * 5 3 2 8 8 C 1.54258 * 105.05599 * 217.36926 * 7 5 3 9 9 F 1.39901 * 110.32230 * 118.89816 * 8 7 5 10 10 F 1.39899 * 110.32516 * 240.99747 * 8 7 5 11 11 C 1.54378 * 105.06502 * 0.02562 * 8 7 5 12 12 N 1.48554 * 104.59426 * 23.85028 * 11 8 7 13 13 C 1.46901 * 111.00208 * 200.96461 * 12 11 8 14 14 C 1.53000 * 109.46769 * 285.42169 * 13 12 11 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47282 * 89.99593 * 20 18 16 22 22 H 1.48498 * 109.47211 * 210.00040 * 20 18 16 23 23 H 1.48506 * 109.46856 * 330.00220 * 20 18 16 24 24 H 1.08998 * 109.47242 * 300.00409 * 1 2 3 25 25 H 1.08996 * 109.47216 * 60.00387 * 1 2 3 26 26 H 1.09003 * 109.47043 * 180.02562 * 1 2 3 27 27 H 1.09002 * 110.32651 * 336.26293 * 7 5 3 28 28 H 1.08996 * 110.32519 * 98.37385 * 7 5 3 29 29 H 1.09002 * 110.40560 * 265.07483 * 11 8 7 30 30 H 1.08997 * 110.41571 * 142.63342 * 11 8 7 31 31 H 1.09002 * 109.47401 * 165.41877 * 13 12 11 32 32 H 1.09001 * 109.46874 * 45.41889 * 13 12 11 33 33 H 1.09001 * 109.47194 * 299.99524 * 14 13 12 34 34 H 1.08992 * 109.47399 * 59.99697 * 14 13 12 35 35 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 36 36 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 37 37 H 0.97000 * 119.99425 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9734 0.7489 -0.8640 7 6 4.1366 0.6884 1.3087 8 6 5.3407 1.5868 1.6592 9 9 5.1392 2.2084 2.8962 10 9 6.5191 0.8331 1.6813 11 6 5.3961 2.6409 0.5327 12 7 4.0103 2.6929 0.0001 13 6 3.9890 3.2516 -1.3583 14 6 4.2079 4.7644 -1.2910 15 6 4.1850 5.3464 -2.7058 16 6 4.4000 6.8365 -2.6396 17 1 4.5387 7.3201 -1.6839 18 6 4.4197 7.5825 -3.7989 19 7 4.2514 6.9934 -4.9627 20 14 4.6869 9.4294 -3.7169 21 1 6.1404 9.7234 -3.7973 22 1 3.9863 10.0819 -4.8521 23 1 4.1466 9.9513 -2.4358 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.3887 0.7318 2.1004 28 1 4.4624 -0.3399 1.1524 29 1 6.0913 2.3282 -0.2465 30 1 5.6857 3.6118 0.9345 31 1 3.0242 3.0443 -1.8214 32 1 4.7820 2.7958 -1.9511 33 1 3.4149 5.2203 -0.6982 34 1 5.1725 4.9717 -0.8280 35 1 4.9778 4.8907 -3.2990 36 1 3.2201 5.1391 -3.1685 37 1 4.2656 7.5182 -5.7784 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880332462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:24 Heat of formation + Delta-G solvation = -205.486493 kcal Electronic energy + Delta-G solvation = -22077.658045 eV Core-core repulsion = 18296.899611 eV Total energy + Delta-G solvation = -3780.758434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.00188 -48.11051 -41.76445 -39.63784 -37.41443 -36.12923 -34.22199 -31.75985 -30.77707 -28.46257 -28.02325 -25.31261 -23.97336 -22.84916 -21.65129 -21.56376 -19.03852 -18.62409 -18.44466 -18.17968 -17.66089 -17.28837 -16.96269 -16.52836 -15.94829 -15.73014 -15.53107 -14.97965 -14.93375 -14.44532 -14.43929 -14.26049 -14.06226 -13.82039 -13.57133 -13.33683 -13.09383 -12.96337 -12.86089 -12.62447 -12.49612 -12.32487 -11.97688 -11.81240 -11.51628 -11.47533 -11.39093 -11.15414 -10.55348 -9.80527 -8.20819 -6.31297 1.07263 1.39561 1.41029 1.45424 1.52402 2.31954 2.41642 2.66824 2.88508 2.99483 3.12639 3.39737 3.70833 3.86505 3.91691 4.01943 4.16680 4.32141 4.33155 4.36211 4.51828 4.58992 4.63409 4.66382 4.71687 4.83924 4.97765 5.18029 5.26958 5.44925 5.50415 5.63543 5.76703 5.84960 6.25482 6.70266 6.84804 7.37812 8.91138 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.017442 B = 0.004376 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.930975 B = 6396.628707 C = 7529.996987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.469 3.531 4 O -0.515 6.515 5 C 0.067 3.933 6 H 0.128 0.872 7 C -0.137 4.137 8 C 0.288 3.712 9 F -0.198 7.198 10 F -0.190 7.190 11 C -0.002 4.002 12 N -0.503 5.503 13 C 0.062 3.938 14 C -0.087 4.087 15 C 0.027 3.973 16 C -0.543 4.543 17 H 0.057 0.943 18 C 0.001 3.999 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.266 1.266 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.138 0.862 27 H 0.108 0.892 28 H 0.148 0.852 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.057 0.943 35 H -0.001 1.001 36 H -0.012 1.012 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.130 -19.017 12.446 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.311 3.689 4 O -0.402 6.402 5 C -0.042 4.042 6 H 0.145 0.855 7 C -0.175 4.175 8 C 0.251 3.749 9 F -0.179 7.179 10 F -0.171 7.171 11 C -0.131 4.131 12 N -0.229 5.229 13 C -0.066 4.066 14 C -0.125 4.125 15 C -0.011 4.011 16 C -0.581 4.581 17 H 0.075 0.925 18 C -0.197 4.197 19 N -0.573 5.573 20 Si 0.788 3.212 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.191 1.191 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.156 0.844 27 H 0.126 0.874 28 H 0.166 0.834 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.017 0.983 36 H 0.006 0.994 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.720 -18.356 12.620 22.342 hybrid contribution 0.270 0.853 -0.761 1.175 sum -1.450 -17.503 11.859 21.192 Atomic orbital electron populations 1.23564 0.74636 1.05882 1.02347 1.86465 1.24938 1.31872 1.83888 1.23466 0.91611 0.81591 0.72274 1.90735 1.67234 1.37598 1.44655 1.22319 0.88422 0.91660 1.01842 0.85473 1.23283 0.96056 1.01495 0.96660 1.21538 0.83319 0.88455 0.81569 1.93032 1.95065 1.83746 1.46051 1.93042 1.50319 1.77016 1.96709 1.24184 0.91174 1.00754 0.96944 1.65084 1.19130 1.14769 1.23885 1.22256 1.01219 0.96057 0.87049 1.21317 1.00533 0.93024 0.97620 1.18956 0.94843 0.94807 0.92454 1.21670 1.49106 0.94342 0.92987 0.92481 1.25949 0.94842 1.03823 0.95043 1.70090 1.51178 1.37740 0.98278 0.85467 0.78595 0.79196 0.77919 1.19473 1.20671 1.19089 0.92045 0.92580 0.84363 0.87351 0.83357 0.88241 0.87212 0.91889 0.92453 0.93842 0.92432 0.98258 0.99404 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.64 16 2 O -0.36 -7.10 10.57 -51.41 -0.54 -7.64 16 3 C 0.47 12.02 6.89 71.24 0.49 12.51 16 4 O -0.52 -17.86 15.65 21.97 0.34 -17.52 16 5 C 0.07 1.44 2.78 44.32 0.12 1.56 16 6 H 0.13 2.09 8.00 -2.39 -0.02 2.07 16 7 C -0.14 -2.24 6.23 31.49 0.20 -2.04 16 8 C 0.29 5.97 2.70 31.49 0.08 6.05 16 9 F -0.20 -4.95 17.09 44.97 0.77 -4.18 16 10 F -0.19 -3.84 17.10 44.97 0.77 -3.07 16 11 C 0.00 -0.06 5.51 86.45 0.48 0.42 16 12 N -0.50 -14.26 4.60 -860.96 -3.96 -18.22 16 13 C 0.06 2.08 4.64 86.30 0.40 2.48 16 14 C -0.09 -3.69 5.27 30.59 0.16 -3.53 16 15 C 0.03 1.45 4.97 29.85 0.15 1.59 16 16 C -0.54 -31.65 9.11 25.60 0.23 -31.42 16 17 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 18 C 0.00 0.07 5.46 84.65 0.46 0.53 16 19 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 20 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 25 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 26 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.11 1.79 7.75 -2.39 -0.02 1.77 16 28 H 0.15 1.43 8.04 -2.39 -0.02 1.41 16 29 H 0.10 2.02 7.73 -2.39 -0.02 2.00 16 30 H 0.11 2.77 7.83 -2.39 -0.02 2.75 16 31 H 0.06 2.32 7.40 -2.39 -0.02 2.30 16 32 H 0.06 1.73 7.77 -2.39 -0.02 1.71 16 33 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 2.30 7.47 -2.39 -0.02 2.28 16 35 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -72.25 320.13 4.73 -67.52 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.06 Total: 3.22 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 3.97 Total: -10.20 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -3.67 Total: -75.19 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.20 Total: -25.16 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 1.54 Total: -7.26 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -72.25 4.73 -67.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880332462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.967 kcal (2) G-P(sol) polarization free energy of solvation -72.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds