Wall clock time and date at job start Mon Mar 30 2020 02:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99764 * 2 1 4 4 H 1.48503 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47278 * 299.99353 * 3 2 1 6 6 H 1.48496 * 109.47499 * 59.99634 * 3 2 1 7 7 C 1.37876 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99403 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00249 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47102 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47266 * 185.13271 * 10 9 7 12 12 C 1.48537 * 111.00434 * 184.33761 * 11 10 9 13 13 C 1.54319 * 104.76812 * 159.14393 * 12 11 10 14 14 H 1.08996 * 111.82490 * 214.59903 * 13 12 11 15 15 C 1.54171 * 108.86048 * 89.66656 * 13 12 11 16 16 C 1.54839 * 104.32991 * 271.08653 * 15 13 12 17 17 C 1.54822 * 102.92491 * 322.00224 * 16 15 13 18 18 C 1.54160 * 104.27868 * 37.96443 * 17 16 15 19 19 C 1.53005 * 112.51174 * 213.65086 * 18 17 16 20 20 F 1.39902 * 109.46815 * 298.12083 * 19 18 17 21 21 F 1.39899 * 109.47356 * 58.12412 * 19 18 17 22 22 F 1.39899 * 109.46947 * 178.12712 * 19 18 17 23 23 C 1.48536 * 110.99953 * 299.74247 * 11 10 9 24 24 H 0.96997 * 119.99880 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46948 * 60.00422 * 9 7 2 26 26 H 1.08992 * 109.47499 * 300.00833 * 9 7 2 27 27 H 1.09001 * 109.47121 * 65.12901 * 10 9 7 28 28 H 1.09000 * 109.47258 * 305.12901 * 10 9 7 29 29 H 1.08991 * 110.39987 * 278.00596 * 12 11 10 30 30 H 1.09000 * 110.39193 * 40.29161 * 12 11 10 31 31 H 1.08999 * 110.46366 * 29.80118 * 15 13 12 32 32 H 1.09000 * 110.45586 * 152.25041 * 15 13 12 33 33 H 1.08999 * 110.75889 * 80.14262 * 16 15 13 34 34 H 1.08993 * 110.75910 * 203.33218 * 16 15 13 35 35 H 1.09002 * 110.26315 * 279.37665 * 17 16 15 36 36 H 1.09005 * 110.70804 * 156.77348 * 17 16 15 37 37 H 1.08998 * 110.39287 * 319.61253 * 23 11 10 38 38 H 1.08999 * 110.39618 * 81.89445 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 7 1.5151 -4.9307 -0.1200 12 6 2.4393 -6.0890 -0.0182 13 6 1.5377 -7.2785 0.3737 14 1 2.0514 -7.9756 1.0356 15 6 1.0207 -7.9564 -0.9109 16 6 -0.2885 -7.1994 -1.2434 17 6 -0.9076 -6.9483 0.1532 18 6 0.3026 -6.6335 1.0546 19 6 0.1142 -7.1395 2.4862 20 9 -0.9875 -6.5007 3.0654 21 9 -0.1046 -8.5212 2.4675 22 9 1.2623 -6.8592 3.2348 23 6 0.5735 -5.1149 1.0139 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8918 27 1 2.8099 -3.6565 0.9351 28 1 2.9309 -3.5547 -0.8378 29 1 2.9203 -6.2769 -0.9781 30 1 3.1888 -5.9103 0.7528 31 1 1.7428 -7.8420 -1.7193 32 1 0.8172 -9.0117 -0.7293 33 1 -0.0723 -6.2540 -1.7411 34 1 -0.9459 -7.8155 -1.8567 35 1 -1.4220 -7.8429 0.5045 36 1 -1.5923 -6.1006 0.1246 37 1 1.0326 -4.7857 1.9461 38 1 -0.3512 -4.5670 0.8327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886610505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:42 Heat of formation + Delta-G solvation = -165.292442 kcal Electronic energy + Delta-G solvation = -23108.942284 eV Core-core repulsion = 19342.299584 eV Total energy + Delta-G solvation = -3766.642700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.06949 -47.56616 -47.51613 -40.16377 -35.54681 -32.99216 -31.24675 -30.62483 -28.46194 -25.67857 -25.35858 -23.97878 -21.98650 -20.56878 -20.27911 -19.43278 -18.20999 -18.09222 -17.54519 -16.33148 -15.68679 -14.65361 -14.59524 -14.44662 -14.35129 -14.20041 -13.98046 -13.90017 -13.72906 -13.68599 -13.37202 -13.21859 -12.67488 -12.30747 -11.92092 -11.76495 -11.20590 -11.15816 -11.09014 -10.96174 -10.90690 -10.80253 -10.70226 -10.51785 -10.41535 -9.92688 -9.39267 -9.14832 -8.37798 -8.01698 -6.02270 -4.04766 2.75848 3.30045 3.37630 3.41365 3.75436 3.84612 3.96343 4.39905 4.53563 4.58134 4.60847 4.71813 5.14607 5.23195 5.26934 5.33457 5.34294 5.47799 5.62001 5.81075 5.85554 5.90027 5.93848 5.96131 6.09181 6.11835 6.16720 6.28813 6.32987 6.49526 6.85718 7.23782 7.34671 7.68266 7.83038 8.01845 8.39261 9.02135 9.59334 11.09158 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.024905 B = 0.004822 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.022177 B = 5805.366717 C = 6141.520634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.026 3.974 10 C 0.051 3.949 11 N -0.498 5.498 12 C 0.034 3.966 13 C -0.083 4.083 14 H 0.085 0.915 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.102 4.102 18 C -0.120 4.120 19 C 0.465 3.535 20 F -0.180 7.180 21 F -0.184 7.184 22 F -0.183 7.183 23 C 0.053 3.947 24 H 0.260 0.740 25 H 0.027 0.973 26 H 0.015 0.985 27 H 0.023 0.977 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 -17.712 1.058 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.076 4.076 11 N -0.222 5.222 12 C -0.094 4.094 13 C -0.102 4.102 14 H 0.103 0.897 15 C -0.146 4.146 16 C -0.152 4.152 17 C -0.140 4.140 18 C -0.121 4.121 19 C 0.410 3.590 20 F -0.161 7.161 21 F -0.166 7.166 22 F -0.164 7.164 23 C -0.075 4.075 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.033 0.967 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.326 -17.561 0.569 17.573 hybrid contribution 0.888 0.932 1.284 1.818 sum 0.562 -16.629 1.853 16.741 Atomic orbital electron populations 1.69975 1.06027 1.26528 1.50670 1.24990 0.94833 0.99215 0.95243 0.86537 0.80082 0.83787 0.77596 1.19773 1.20963 1.21029 1.21203 0.93018 0.90977 1.50862 0.92711 1.19106 0.93942 0.90292 0.97772 1.22551 0.97374 0.88644 0.99056 1.65541 1.14608 1.02513 1.39508 1.23243 0.94602 0.90588 1.00978 1.22527 0.93567 0.97081 0.97062 0.89693 1.22324 0.97923 0.98478 0.95917 1.22403 0.95539 1.01584 0.95683 1.22333 0.94694 1.02107 0.94834 1.23283 1.00392 0.99568 0.88903 1.20342 0.73705 0.75178 0.89728 1.93188 1.54587 1.81725 1.86633 1.93145 1.94654 1.31819 1.96963 1.93169 1.50640 1.93367 1.79231 1.23104 0.99823 0.89976 0.94587 0.93020 0.95510 0.96668 0.95892 0.91407 0.89698 0.93968 0.90806 0.91877 0.89136 0.91596 0.91371 0.89798 0.93194 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.67 4.70 -27.89 -0.13 0.53 16 10 C 0.05 1.04 4.85 -3.83 -0.02 1.02 16 11 N -0.50 -8.50 4.68 -230.10 -1.08 -9.58 16 12 C 0.03 0.47 5.91 -2.23 -0.01 0.46 16 13 C -0.08 -1.01 3.30 -88.22 -0.29 -1.30 16 14 H 0.08 0.97 7.75 -51.93 -0.40 0.56 16 15 C -0.11 -1.14 6.28 -25.15 -0.16 -1.29 16 16 C -0.11 -1.29 6.51 -24.80 -0.16 -1.45 16 17 C -0.10 -1.23 5.69 -25.16 -0.14 -1.37 16 18 C -0.12 -1.60 0.49 -152.11 -0.07 -1.68 16 19 C 0.46 6.39 2.21 37.16 0.08 6.47 16 20 F -0.18 -2.63 17.01 2.25 0.04 -2.59 16 21 F -0.18 -2.38 16.53 2.25 0.04 -2.35 16 22 F -0.18 -2.68 16.38 2.25 0.04 -2.64 16 23 C 0.05 0.88 4.16 -2.23 -0.01 0.87 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.40 7.21 -51.93 -0.37 0.03 16 27 H 0.02 0.47 7.97 -51.93 -0.41 0.06 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.08 7.44 -51.93 -0.39 0.69 16 30 H 0.04 0.60 7.91 -51.93 -0.41 0.19 16 31 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.20 7.71 -51.93 -0.40 0.80 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.74 7.51 -51.93 -0.39 0.35 16 36 H 0.08 1.05 7.45 -51.93 -0.39 0.67 16 37 H 0.05 0.89 7.30 -51.93 -0.38 0.51 16 38 H 0.10 1.76 7.07 -51.93 -0.37 1.40 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -29.07 308.81 -7.45 -36.52 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.53 Total: -3.55 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.33 Total: -11.09 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.34 Total: -35.48 kcal Atomic # 9 Polarization: -7.69 SS G_CDS: 0.11 Total: -7.58 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.07 -7.45 -36.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886610505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.772 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds