Wall clock time and date at job start Mon Mar 30 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99764 * 2 1 4 4 H 1.48503 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47278 * 299.99353 * 3 2 1 6 6 H 1.48496 * 109.47499 * 59.99634 * 3 2 1 7 7 C 1.37876 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99403 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00249 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47102 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47266 * 185.13271 * 10 9 7 12 12 C 1.48537 * 111.00434 * 184.33761 * 11 10 9 13 13 C 1.54319 * 104.76812 * 159.14393 * 12 11 10 14 14 H 1.08996 * 111.82490 * 214.59903 * 13 12 11 15 15 C 1.54171 * 108.86048 * 89.66656 * 13 12 11 16 16 C 1.54839 * 104.32991 * 271.08653 * 15 13 12 17 17 C 1.54822 * 102.92491 * 322.00224 * 16 15 13 18 18 C 1.54160 * 104.27868 * 37.96443 * 17 16 15 19 19 C 1.53005 * 112.51174 * 213.65086 * 18 17 16 20 20 F 1.39902 * 109.46815 * 298.12083 * 19 18 17 21 21 F 1.39899 * 109.47356 * 58.12412 * 19 18 17 22 22 F 1.39899 * 109.46947 * 178.12712 * 19 18 17 23 23 C 1.48536 * 110.99953 * 299.74247 * 11 10 9 24 24 H 0.96997 * 119.99880 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46948 * 60.00422 * 9 7 2 26 26 H 1.08992 * 109.47499 * 300.00833 * 9 7 2 27 27 H 1.09001 * 109.47121 * 65.12901 * 10 9 7 28 28 H 1.09000 * 109.47258 * 305.12901 * 10 9 7 29 29 H 1.08991 * 110.39987 * 278.00596 * 12 11 10 30 30 H 1.09000 * 110.39193 * 40.29161 * 12 11 10 31 31 H 1.08999 * 110.46366 * 29.80118 * 15 13 12 32 32 H 1.09000 * 110.45586 * 152.25041 * 15 13 12 33 33 H 1.08999 * 110.75889 * 80.14262 * 16 15 13 34 34 H 1.08993 * 110.75910 * 203.33218 * 16 15 13 35 35 H 1.09002 * 110.26315 * 279.37665 * 17 16 15 36 36 H 1.09005 * 110.70804 * 156.77348 * 17 16 15 37 37 H 1.08998 * 110.39287 * 319.61253 * 23 11 10 38 38 H 1.08999 * 110.39618 * 81.89445 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0027 11 7 1.5151 -4.9307 -0.1200 12 6 2.4393 -6.0890 -0.0182 13 6 1.5377 -7.2785 0.3737 14 1 2.0514 -7.9756 1.0356 15 6 1.0207 -7.9564 -0.9109 16 6 -0.2885 -7.1994 -1.2434 17 6 -0.9076 -6.9483 0.1532 18 6 0.3026 -6.6335 1.0546 19 6 0.1142 -7.1395 2.4862 20 9 -0.9875 -6.5007 3.0654 21 9 -0.1046 -8.5212 2.4675 22 9 1.2623 -6.8592 3.2348 23 6 0.5735 -5.1149 1.0139 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8918 27 1 2.8099 -3.6565 0.9351 28 1 2.9309 -3.5547 -0.8378 29 1 2.9203 -6.2769 -0.9781 30 1 3.1888 -5.9103 0.7528 31 1 1.7428 -7.8420 -1.7193 32 1 0.8172 -9.0117 -0.7293 33 1 -0.0723 -6.2540 -1.7411 34 1 -0.9459 -7.8155 -1.8567 35 1 -1.4220 -7.8429 0.5045 36 1 -1.5923 -6.1006 0.1246 37 1 1.0326 -4.7857 1.9461 38 1 -0.3512 -4.5670 0.8327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886610505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:41 Heat of formation + Delta-G solvation = -181.801336 kcal Electronic energy + Delta-G solvation = -23109.658164 eV Core-core repulsion = 19342.299584 eV Total energy + Delta-G solvation = -3767.358579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.19373 -48.68431 -48.65100 -41.31154 -36.98086 -34.97950 -32.33690 -32.17577 -29.94088 -27.10650 -26.64558 -25.46291 -23.46242 -21.83598 -21.50368 -20.67426 -19.33559 -19.21326 -18.84655 -18.27242 -16.93193 -16.49686 -15.92492 -15.65827 -15.55655 -15.38235 -15.14800 -15.10084 -14.90512 -14.82196 -14.71757 -14.40956 -14.12285 -14.06741 -13.38882 -13.14175 -12.95539 -12.71641 -12.42838 -12.26011 -12.11119 -12.06742 -11.82022 -11.78884 -11.69830 -11.46583 -11.30080 -11.10518 -10.57093 -9.44534 -8.21226 -6.32375 1.39965 1.40118 1.53318 1.63694 2.39575 2.62718 2.75159 2.84063 3.12693 3.23084 3.48118 3.52029 3.62033 4.09552 4.16491 4.31238 4.34146 4.38501 4.43284 4.54170 4.61423 4.72862 4.76296 4.90438 4.91960 4.99923 5.06351 5.08731 5.24289 5.29686 5.43790 5.54750 5.59801 5.76674 5.87658 6.07332 6.26735 6.84556 7.37000 8.91028 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.024905 B = 0.004822 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.022177 B = 5805.366717 C = 6141.520634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.067 3.933 11 N -0.502 5.502 12 C 0.033 3.967 13 C -0.078 4.078 14 H 0.101 0.899 15 C -0.102 4.102 16 C -0.113 4.113 17 C -0.103 4.103 18 C -0.115 4.115 19 C 0.467 3.533 20 F -0.188 7.188 21 F -0.174 7.174 22 F -0.188 7.188 23 C 0.054 3.946 24 H 0.263 0.737 25 H -0.002 1.002 26 H -0.011 1.011 27 H 0.020 0.980 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.032 0.968 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.247 -19.106 0.568 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.060 4.060 11 N -0.226 5.226 12 C -0.095 4.095 13 C -0.097 4.097 14 H 0.119 0.881 15 C -0.139 4.139 16 C -0.150 4.150 17 C -0.140 4.140 18 C -0.117 4.117 19 C 0.412 3.588 20 F -0.169 7.169 21 F -0.156 7.156 22 F -0.170 7.170 23 C -0.075 4.075 24 H 0.072 0.928 25 H 0.016 0.984 26 H 0.007 0.993 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.846 -18.976 0.077 18.995 hybrid contribution 0.482 1.344 1.458 2.041 sum 1.328 -17.632 1.535 17.748 Atomic orbital electron populations 1.70110 1.07798 1.27708 1.51511 1.25945 0.95731 1.03289 0.94634 0.85394 0.79084 0.78765 0.77765 1.18551 1.20262 1.20524 1.21645 0.93532 0.92261 1.50769 0.92164 1.18907 0.94156 0.92043 0.95040 1.22185 0.96019 0.88752 0.99074 1.65459 1.15209 1.02239 1.39674 1.23378 0.94360 0.89688 1.02048 1.22597 0.92395 0.96540 0.98173 0.88114 1.22342 0.97323 0.99259 0.95014 1.22376 0.96618 1.01000 0.95028 1.22371 0.94043 1.02335 0.95262 1.23249 1.02060 0.97076 0.89270 1.20344 0.73309 0.75531 0.89582 1.93175 1.54994 1.81989 1.86788 1.93162 1.94571 1.30912 1.96911 1.93158 1.50938 1.93469 1.79429 1.22978 0.98545 0.92431 0.93508 0.92771 0.98399 0.99258 0.96130 0.90912 0.87898 0.94089 0.89721 0.89634 0.91628 0.89395 0.89574 0.91158 0.94964 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.02 9.11 25.60 0.23 -30.79 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.04 1.91 4.70 29.85 0.14 2.05 16 10 C 0.07 2.81 4.85 86.30 0.42 3.23 16 11 N -0.50 -17.29 4.68 -881.91 -4.13 -21.41 16 12 C 0.03 0.86 5.91 86.43 0.51 1.37 16 13 C -0.08 -1.71 3.30 -9.24 -0.03 -1.74 16 14 H 0.10 1.95 7.75 -2.39 -0.02 1.94 16 15 C -0.10 -1.78 6.28 31.62 0.20 -1.58 16 16 C -0.11 -2.31 6.51 31.84 0.21 -2.10 16 17 C -0.10 -2.35 5.69 31.61 0.18 -2.17 16 18 C -0.11 -2.98 0.49 -50.63 -0.02 -3.00 16 19 C 0.47 12.35 2.21 71.98 0.16 12.51 16 20 F -0.19 -5.48 17.01 44.97 0.76 -4.72 16 21 F -0.17 -4.10 16.53 44.97 0.74 -3.36 16 22 F -0.19 -5.37 16.38 44.97 0.74 -4.63 16 23 C 0.05 1.84 4.16 86.43 0.36 2.20 16 24 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 25 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 26 H -0.01 -0.63 7.21 -2.39 -0.02 -0.65 16 27 H 0.02 0.86 7.97 -2.39 -0.02 0.84 16 28 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.10 2.34 7.44 -2.39 -0.02 2.32 16 30 H 0.04 1.10 7.91 -2.39 -0.02 1.08 16 31 H 0.08 1.35 7.45 -2.39 -0.02 1.33 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.69 7.71 -2.39 -0.02 1.67 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.68 7.51 -2.39 -0.02 1.66 16 36 H 0.07 1.80 7.45 -2.38 -0.02 1.78 16 37 H 0.03 1.20 7.30 -2.39 -0.02 1.18 16 38 H 0.08 2.90 7.07 -2.39 -0.02 2.88 16 Total: -1.00 -63.44 308.81 4.30 -59.14 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.05 Total: 4.69 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 2.81 Total: -19.45 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -3.84 Total: -78.08 kcal Atomic # 9 Polarization: -14.95 SS G_CDS: 2.24 Total: -12.70 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -63.44 4.30 -59.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886610505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.663 kcal (2) G-P(sol) polarization free energy of solvation -63.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds