Wall clock time and date at job start Mon Mar 30 2020 02:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81394 * 103.00224 * 2 1 4 4 C 1.50701 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.38235 * 119.99948 * 89.99417 * 4 3 2 6 6 C 1.38240 * 119.99840 * 180.25676 * 5 4 3 7 7 C 1.38229 * 119.99782 * 359.51698 * 6 5 4 8 8 C 1.50701 * 119.99811 * 180.25676 * 7 6 5 9 9 N 1.46499 * 109.47336 * 270.20610 * 8 7 6 10 10 C 1.36933 * 120.00455 * 270.00345 * 9 8 7 11 11 H 1.07998 * 120.00617 * 140.83910 * 10 9 8 12 12 C 1.38813 * 119.99556 * 320.84310 * 10 9 8 13 13 N 1.31626 * 119.99994 * 156.91025 * 12 10 9 14 14 Si 1.86799 * 120.00169 * 336.90456 * 12 10 9 15 15 H 1.48502 * 109.47164 * 92.03042 * 14 12 10 16 16 H 1.48505 * 109.47269 * 212.03094 * 14 12 10 17 17 H 1.48497 * 109.47111 * 332.03426 * 14 12 10 18 18 C 1.46510 * 119.99882 * 89.99878 * 9 8 7 19 19 C 1.52997 * 117.49512 * 184.02673 * 18 9 8 20 20 C 1.52997 * 117.49597 * 115.40360 * 18 9 8 21 21 C 1.38226 * 120.00331 * 0.46443 * 7 6 5 22 22 C 1.38228 * 120.00157 * 269.98051 * 4 3 2 23 23 H 1.09004 * 109.47263 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47199 * 299.99913 * 1 2 3 25 25 H 1.09005 * 109.47200 * 60.00254 * 1 2 3 26 26 H 1.09000 * 109.47392 * 59.99910 * 3 2 1 27 27 H 1.09003 * 109.46813 * 299.99949 * 3 2 1 28 28 H 1.08006 * 120.00062 * 359.97438 * 5 4 3 29 29 H 1.08002 * 119.99688 * 179.72689 * 6 5 4 30 30 H 1.09003 * 109.47501 * 30.20959 * 8 7 6 31 31 H 1.09000 * 109.47279 * 150.20829 * 8 7 6 32 32 H 0.96996 * 119.99896 * 179.97438 * 13 12 10 33 33 H 1.09001 * 115.54786 * 329.73579 * 18 9 8 34 34 H 1.08994 * 117.50157 * 359.97438 * 19 18 9 35 35 H 1.09001 * 117.49755 * 145.02659 * 19 18 9 36 36 H 1.09000 * 117.49410 * 214.98402 * 20 18 9 37 37 H 1.09002 * 117.49922 * 359.97367 * 20 18 9 38 38 H 1.08003 * 120.00561 * 179.79432 * 21 7 6 39 39 H 1.08001 * 119.99703 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7195 1.9373 -0.0006 5 6 4.4057 2.0152 -1.1981 6 6 5.7799 2.1657 -1.1986 7 6 6.4666 2.2483 -0.0018 8 6 7.9640 2.4182 -0.0025 9 7 8.6049 1.1009 -0.0022 10 6 8.9049 0.4855 1.1837 11 1 8.7668 -0.5804 1.2891 12 6 9.3865 1.2319 2.2504 13 7 9.2515 0.7844 3.4809 14 14 10.2264 2.8712 1.9397 15 1 9.2218 3.9628 2.0075 16 1 11.2713 3.0954 2.9708 17 1 10.8537 2.8588 0.5938 18 6 8.9249 0.4417 -1.2710 19 6 9.5067 -0.9718 -1.2055 20 6 10.4023 0.2070 -1.5921 21 6 5.7803 2.1708 1.1956 22 6 4.4067 2.0155 1.1961 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8032 2.2371 0.8900 27 1 1.8031 2.2370 -0.8900 28 1 3.8688 1.9539 -2.1332 29 1 6.3165 2.2222 -2.1342 30 1 8.2668 2.9695 -0.8927 31 1 8.2675 2.9700 0.8872 32 1 9.5884 1.3057 4.2262 33 1 8.2599 0.6747 -2.1026 34 1 9.6519 -1.4111 -0.2187 35 1 9.2245 -1.6692 -1.9943 36 1 10.7091 0.2852 -2.6351 37 1 11.1362 0.5434 -0.8597 38 1 6.3172 2.2320 2.1307 39 1 3.8704 1.9553 2.1317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891795997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:04 Heat of formation + Delta-G solvation = 72.455286 kcal Electronic energy + Delta-G solvation = -19097.613689 eV Core-core repulsion = 16325.890116 eV Total energy + Delta-G solvation = -2771.723574 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.02516 -37.10407 -34.09793 -32.47095 -30.91982 -30.42063 -29.12512 -27.61705 -24.72398 -23.55080 -22.16294 -21.49088 -20.44163 -19.63538 -16.79810 -16.32021 -15.61908 -15.45843 -15.24434 -14.90203 -14.58205 -14.09267 -13.81061 -13.68504 -13.29327 -12.93693 -12.82171 -12.64857 -12.48930 -12.26653 -11.95849 -11.53211 -11.26677 -10.83727 -10.63822 -10.63349 -10.36648 -10.05106 -10.01656 -9.83711 -9.52292 -9.42286 -8.54470 -8.39414 -8.02216 -7.68158 -6.75544 -6.06640 -3.47841 1.24504 1.94466 2.17516 2.64079 3.25199 3.42848 3.49161 4.26281 4.46190 4.81886 4.85254 4.89616 4.97804 5.00086 5.01527 5.23659 5.37961 5.41423 5.52443 5.53627 5.66839 5.80289 5.95319 5.99621 6.02026 6.09684 6.22575 6.43960 6.45317 6.49615 6.54745 6.64422 6.89914 6.93769 6.99663 7.12686 7.32094 7.52884 7.99465 8.37450 8.92672 9.63797 10.04487 11.07775 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020322 B = 0.004936 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.461279 B = 5670.778813 C = 6119.928623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.252 6.252 3 C -0.034 4.034 4 C -0.099 4.099 5 C -0.107 4.107 6 C -0.118 4.118 7 C -0.068 4.068 8 C 0.166 3.834 9 N -0.563 5.563 10 C -0.266 4.266 11 H 0.082 0.918 12 C 0.043 3.957 13 N -0.891 5.891 14 Si 0.867 3.133 15 H -0.282 1.282 16 H -0.300 1.300 17 H -0.265 1.265 18 C 0.121 3.879 19 C -0.188 4.188 20 C -0.222 4.222 21 C -0.091 4.091 22 C -0.101 4.101 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.264 0.736 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.862 3.450 -8.640 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.024 6.024 3 C -0.181 4.181 4 C -0.101 4.101 5 C -0.126 4.126 6 C -0.137 4.137 7 C -0.072 4.072 8 C 0.041 3.959 9 N -0.281 5.281 10 C -0.394 4.394 11 H 0.099 0.901 12 C -0.159 4.159 13 N -0.531 5.531 14 Si 0.696 3.304 15 H -0.210 1.210 16 H -0.227 1.227 17 H -0.190 1.190 18 C 0.013 3.987 19 C -0.226 4.226 20 C -0.263 4.263 21 C -0.110 4.110 22 C -0.121 4.121 23 H 0.117 0.883 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.145 0.855 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.203 2.570 -8.419 15.046 hybrid contribution -0.334 1.747 0.028 1.779 sum -12.537 4.317 -8.391 15.691 Atomic orbital electron populations 1.23395 0.95689 1.06233 1.04496 1.87487 1.05466 1.11492 1.97961 1.22227 0.96804 0.94215 1.04856 1.18958 0.92163 1.04788 0.94156 1.20802 0.94385 1.00860 0.96601 1.20924 0.93587 1.01552 0.97639 1.20933 0.97905 0.95724 0.92629 1.20349 0.86758 0.88257 1.00534 1.43621 1.64894 1.18190 1.01401 1.18712 1.38872 0.94733 0.87105 0.90082 1.25477 0.97510 0.97747 0.95157 1.69886 1.45645 1.39557 0.97976 0.87132 0.80166 0.84845 0.78251 1.20998 1.22731 1.18992 1.21130 0.92254 0.95791 0.89540 1.23055 1.05429 0.91522 1.02575 1.23373 0.97702 1.05358 0.99855 1.21133 0.93238 0.97951 0.98697 1.20945 0.94599 0.99835 0.96737 0.88306 0.90749 0.90833 0.89695 0.89803 0.86862 0.86700 0.93025 0.91509 0.92569 0.89127 0.87896 0.90505 0.90814 0.89266 0.85493 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 10.76 101.05 1.09 -0.06 16 2 S -0.25 -3.36 22.36 -107.50 -2.40 -5.76 16 3 C -0.03 -0.41 6.07 36.01 0.22 -0.20 16 4 C -0.10 -1.52 5.14 -104.63 -0.54 -2.05 16 5 C -0.11 -1.63 9.70 -39.58 -0.38 -2.01 16 6 C -0.12 -1.99 9.70 -39.58 -0.38 -2.37 16 7 C -0.07 -1.33 5.46 -104.63 -0.57 -1.90 16 8 C 0.17 3.52 4.68 -5.19 -0.02 3.49 16 9 N -0.56 -13.06 2.36 -167.02 -0.39 -13.46 16 10 C -0.27 -7.16 8.93 -15.06 -0.13 -7.29 16 11 H 0.08 2.41 6.86 -52.49 -0.36 2.05 16 12 C 0.04 1.18 5.28 -17.43 -0.09 1.09 16 13 N -0.89 -26.20 13.97 55.49 0.78 -25.42 16 14 Si 0.87 21.36 25.31 -169.99 -4.30 17.05 16 15 H -0.28 -6.68 6.52 56.52 0.37 -6.32 16 16 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.12 2.45 6.57 -67.93 -0.45 2.01 16 19 C -0.19 -3.64 9.80 -26.73 -0.26 -3.90 16 20 C -0.22 -4.24 10.35 -26.73 -0.28 -4.52 16 21 C -0.09 -1.81 9.70 -39.59 -0.38 -2.19 16 22 C -0.10 -1.73 9.70 -39.58 -0.38 -2.11 16 23 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 26 H 0.08 0.93 8.09 -51.92 -0.42 0.51 16 27 H 0.08 0.88 8.09 -51.92 -0.42 0.46 16 28 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.05 0.98 8.02 -51.93 -0.42 0.56 16 31 H 0.07 1.54 3.39 -51.93 -0.18 1.36 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.10 2.25 6.44 -51.93 -0.33 1.92 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 38 H 0.13 2.74 8.06 -52.48 -0.42 2.32 16 39 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 335.00 15.07 5.05 5.05 Total: -1.00 -29.40 335.00 -9.80 -39.20 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.95 Total: 5.37 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -2.58 Total: -22.03 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.38 Total: -38.88 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.30 Total: 17.05 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.40 Total: -5.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.40 -9.80 -39.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891795997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.657 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds