Wall clock time and date at job start Mon Mar 30 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47070 * 2 1 4 4 C 1.46906 * 110.99721 * 287.90531 * 3 2 1 5 5 C 1.50700 * 109.46995 * 160.36496 * 4 3 2 6 6 H 1.08006 * 119.99955 * 4.67157 * 5 4 3 7 7 C 1.37879 * 120.00003 * 184.67363 * 5 4 3 8 8 N 1.31512 * 119.99893 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99923 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47225 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47153 * 119.99582 * 9 7 5 12 12 H 1.48496 * 109.47238 * 239.99953 * 9 7 5 13 13 C 1.46897 * 111.00033 * 163.95525 * 3 2 1 14 14 C 1.53008 * 109.47068 * 293.95002 * 13 3 2 15 15 H 1.09004 * 115.54737 * 330.72760 * 14 13 3 16 16 C 1.52995 * 117.49782 * 185.01648 * 14 13 3 17 17 H 1.08997 * 117.50305 * 359.97438 * 16 14 13 18 18 C 1.50699 * 117.49773 * 145.02512 * 16 14 13 19 19 O 1.20829 * 120.00223 * 0.02562 * 18 16 14 20 20 O 1.34225 * 120.00344 * 180.02562 * 18 16 14 21 21 C 1.45199 * 117.00336 * 179.97438 * 20 18 16 22 22 C 1.52995 * 117.49741 * 116.39037 * 14 13 3 23 23 F 1.39901 * 117.49854 * 214.97881 * 22 14 13 24 24 F 1.39901 * 117.49991 * 0.02562 * 22 14 13 25 25 H 1.08995 * 109.47257 * 299.22579 * 1 2 3 26 26 H 1.09004 * 109.47420 * 59.22794 * 1 2 3 27 27 H 1.09006 * 109.47040 * 179.22577 * 1 2 3 28 28 H 1.08998 * 109.47091 * 239.99853 * 2 1 3 29 29 H 1.09003 * 109.47226 * 119.99848 * 2 1 3 30 30 H 1.09002 * 109.47122 * 280.36357 * 4 3 2 31 31 H 1.08997 * 109.47040 * 40.36213 * 4 3 2 32 32 H 0.97003 * 119.99923 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47275 * 173.95274 * 13 3 2 34 34 H 1.08996 * 109.47563 * 53.94850 * 13 3 2 35 35 H 1.09000 * 109.47027 * 60.00578 * 21 20 18 36 36 H 1.09000 * 109.46917 * 180.02562 * 21 20 18 37 37 H 1.09003 * 109.47164 * 300.00397 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7975 2.0218 -1.3051 5 6 1.8487 3.5197 -1.1482 6 1 2.1027 3.9543 -0.1926 7 6 1.5712 4.3355 -2.2246 8 7 1.2624 3.8063 -3.3883 9 14 1.6339 6.1923 -2.0300 10 1 2.0025 6.5313 -0.6320 11 1 2.6471 6.7535 -2.9595 12 1 0.3016 6.7681 -2.3437 13 6 3.4377 1.4420 0.3790 14 6 3.5944 1.0006 1.8357 15 1 2.7384 1.1974 2.4812 16 6 4.9881 1.1027 2.4587 17 1 5.7934 1.4839 1.8309 18 6 5.0726 1.4679 3.9183 19 8 4.0626 1.6671 4.5508 20 8 6.2700 1.5719 4.5159 21 6 6.2756 1.9276 5.9236 22 6 4.4062 -0.2678 2.1060 23 9 3.9935 -1.0858 3.1632 24 9 4.9489 -0.9349 1.0025 25 1 -0.3633 0.5017 0.8968 26 1 -0.3634 0.5258 -0.8830 27 1 -0.3633 -1.0276 -0.0139 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5728 1.7027 -2.0017 31 1 0.8205 1.7299 -1.6902 32 1 1.0675 4.3802 -4.1457 33 1 3.8029 2.4630 0.2675 34 1 4.0132 0.7778 -0.2657 35 1 5.7297 1.1739 6.4910 36 1 7.3039 1.9781 6.2815 37 1 5.7974 2.8983 6.0549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893922449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:48 Heat of formation + Delta-G solvation = -147.666444 kcal Electronic energy + Delta-G solvation = -22185.823037 eV Core-core repulsion = 18407.571868 eV Total energy + Delta-G solvation = -3778.251169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.81752 -47.47713 -40.70479 -37.93387 -36.72562 -35.41199 -32.62483 -30.29687 -28.62462 -27.54092 -25.33467 -24.15166 -22.62804 -21.45227 -20.59562 -19.82581 -18.40537 -17.37477 -17.33153 -16.53149 -16.45895 -16.17939 -15.56781 -14.88660 -14.69752 -14.10238 -14.00795 -13.78793 -13.73293 -13.58620 -13.51147 -13.28383 -12.47362 -12.34495 -12.09562 -11.86183 -11.56351 -11.30085 -11.17662 -11.04255 -10.87653 -10.81505 -10.74205 -10.55742 -10.33029 -9.97348 -9.65770 -9.24361 -8.44387 -7.36575 -6.04420 -4.05786 1.64832 2.27264 2.94130 3.07470 3.30057 3.38059 3.42683 3.94721 4.23527 4.40799 4.42564 4.68146 4.86921 4.95714 4.96921 5.23808 5.30785 5.33105 5.40445 5.66430 5.67872 5.88577 6.07782 6.09251 6.13039 6.31936 6.38606 6.57219 6.81525 7.16377 7.28632 7.47993 7.78539 8.05825 8.12338 8.48210 9.01944 9.58656 11.06125 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.005121 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.914956 B = 5466.008738 C = 6506.260767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 N -0.532 5.532 4 C 0.190 3.810 5 C -0.506 4.506 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.085 3.915 14 C -0.087 4.087 15 H 0.153 0.847 16 C -0.173 4.173 17 H 0.162 0.838 18 C 0.496 3.504 19 O -0.486 6.486 20 O -0.353 6.353 21 C 0.035 3.965 22 C 0.221 3.779 23 F -0.155 7.155 24 F -0.147 7.147 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.025 0.975 29 H 0.054 0.946 30 H -0.009 1.009 31 H 0.041 0.959 32 H 0.261 0.739 33 H 0.104 0.896 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.028 -6.976 13.241 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.257 5.257 4 C 0.066 3.934 5 C -0.545 4.545 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 C -0.044 4.044 14 C -0.106 4.106 15 H 0.170 0.830 16 C -0.193 4.193 17 H 0.179 0.821 18 C 0.337 3.663 19 O -0.372 6.372 20 O -0.269 6.269 21 C -0.058 4.058 22 C 0.183 3.817 23 F -0.135 7.135 24 F -0.128 7.128 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.009 0.991 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.406 -6.648 13.628 17.337 hybrid contribution 0.618 0.374 -0.383 0.817 sum 9.024 -6.274 13.245 17.211 Atomic orbital electron populations 1.21740 0.95244 1.00086 1.03014 1.22035 0.96284 0.90586 0.99076 1.62162 1.14123 1.14572 1.34822 1.19822 0.96838 0.94271 0.82490 1.21206 1.46343 0.90562 0.96367 0.91774 1.24978 0.95419 0.98942 0.95210 1.69962 1.47657 1.35181 1.01005 0.86470 0.77602 0.85389 0.78134 1.19658 1.21155 1.21036 1.21631 0.91936 1.02559 0.88265 1.24127 0.93600 0.91173 1.01708 0.82976 1.23394 1.03655 0.99333 0.92936 0.82092 1.22076 0.81670 0.74053 0.88492 1.90712 1.36503 1.44679 1.65277 1.86471 1.32663 1.80533 1.27271 1.23332 1.03874 1.01293 0.77313 1.20010 1.02125 0.80903 0.78620 1.93055 1.90310 1.74864 1.55269 1.93051 1.86217 1.82265 1.51228 0.92321 0.91881 0.93570 0.95659 0.92719 0.99081 0.94115 0.92968 0.87807 0.94089 0.91691 0.87850 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.99 37.16 0.37 -2.06 16 2 C 0.05 0.87 5.55 -3.83 -0.02 0.85 16 3 N -0.53 -10.89 4.38 -236.07 -1.03 -11.92 16 4 C 0.19 4.74 4.59 -4.97 -0.02 4.72 16 5 C -0.51 -13.70 8.61 -34.44 -0.30 -14.00 16 6 H 0.06 1.72 7.66 -52.48 -0.40 1.32 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 9 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.08 1.49 5.05 -3.82 -0.02 1.47 16 14 C -0.09 -1.30 4.16 -90.62 -0.38 -1.68 16 15 H 0.15 2.46 7.67 -51.93 -0.40 2.06 16 16 C -0.17 -2.22 6.01 -91.77 -0.55 -2.77 16 17 H 0.16 1.68 8.14 -51.93 -0.42 1.26 16 18 C 0.50 6.77 7.37 36.01 0.27 7.04 16 19 O -0.49 -7.82 16.01 -18.75 -0.30 -8.12 16 20 O -0.35 -4.12 10.56 -39.25 -0.41 -4.54 16 21 C 0.04 0.30 10.56 101.05 1.07 1.36 16 22 C 0.22 3.11 4.96 -26.73 -0.13 2.98 16 23 F -0.15 -2.31 17.13 2.25 0.04 -2.27 16 24 F -0.15 -2.13 16.47 2.25 0.04 -2.09 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.19 6.52 -51.93 -0.34 0.85 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16 29 H 0.05 0.89 6.74 -51.93 -0.35 0.54 16 30 H -0.01 -0.23 8.00 -51.93 -0.42 -0.64 16 31 H 0.04 1.09 6.24 -51.93 -0.32 0.76 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.10 1.92 7.32 -51.93 -0.38 1.54 16 34 H 0.04 0.71 7.04 -51.93 -0.37 0.34 16 35 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -30.40 323.40 -5.96 -36.36 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.06 Total: -2.50 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 0.19 Total: -0.65 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.30 Total: -37.27 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.71 Total: -12.66 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.08 Total: -4.36 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.40 -5.96 -36.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893922449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.306 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds