Wall clock time and date at job start Mon Mar 30 2020 01:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47070 * 2 1 4 4 C 1.46906 * 110.99721 * 287.90531 * 3 2 1 5 5 C 1.50700 * 109.46995 * 160.36496 * 4 3 2 6 6 H 1.08006 * 119.99955 * 4.67157 * 5 4 3 7 7 C 1.37879 * 120.00003 * 184.67363 * 5 4 3 8 8 N 1.31512 * 119.99893 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99923 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47225 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47153 * 119.99582 * 9 7 5 12 12 H 1.48496 * 109.47238 * 239.99953 * 9 7 5 13 13 C 1.46897 * 111.00033 * 163.95525 * 3 2 1 14 14 C 1.53008 * 109.47068 * 293.95002 * 13 3 2 15 15 H 1.09004 * 115.54737 * 330.72760 * 14 13 3 16 16 C 1.52995 * 117.49782 * 185.01648 * 14 13 3 17 17 H 1.08997 * 117.50305 * 359.97438 * 16 14 13 18 18 C 1.50699 * 117.49773 * 145.02512 * 16 14 13 19 19 O 1.20829 * 120.00223 * 0.02562 * 18 16 14 20 20 O 1.34225 * 120.00344 * 180.02562 * 18 16 14 21 21 C 1.45199 * 117.00336 * 179.97438 * 20 18 16 22 22 C 1.52995 * 117.49741 * 116.39037 * 14 13 3 23 23 F 1.39901 * 117.49854 * 214.97881 * 22 14 13 24 24 F 1.39901 * 117.49991 * 0.02562 * 22 14 13 25 25 H 1.08995 * 109.47257 * 299.22579 * 1 2 3 26 26 H 1.09004 * 109.47420 * 59.22794 * 1 2 3 27 27 H 1.09006 * 109.47040 * 179.22577 * 1 2 3 28 28 H 1.08998 * 109.47091 * 239.99853 * 2 1 3 29 29 H 1.09003 * 109.47226 * 119.99848 * 2 1 3 30 30 H 1.09002 * 109.47122 * 280.36357 * 4 3 2 31 31 H 1.08997 * 109.47040 * 40.36213 * 4 3 2 32 32 H 0.97003 * 119.99923 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47275 * 173.95274 * 13 3 2 34 34 H 1.08996 * 109.47563 * 53.94850 * 13 3 2 35 35 H 1.09000 * 109.47027 * 60.00578 * 21 20 18 36 36 H 1.09000 * 109.46917 * 180.02562 * 21 20 18 37 37 H 1.09003 * 109.47164 * 300.00397 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7975 2.0218 -1.3051 5 6 1.8487 3.5197 -1.1482 6 1 2.1027 3.9543 -0.1926 7 6 1.5712 4.3355 -2.2246 8 7 1.2624 3.8063 -3.3883 9 14 1.6339 6.1923 -2.0300 10 1 2.0025 6.5313 -0.6320 11 1 2.6471 6.7535 -2.9595 12 1 0.3016 6.7681 -2.3437 13 6 3.4377 1.4420 0.3790 14 6 3.5944 1.0006 1.8357 15 1 2.7384 1.1974 2.4812 16 6 4.9881 1.1027 2.4587 17 1 5.7934 1.4839 1.8309 18 6 5.0726 1.4679 3.9183 19 8 4.0626 1.6671 4.5508 20 8 6.2700 1.5719 4.5159 21 6 6.2756 1.9276 5.9236 22 6 4.4062 -0.2678 2.1060 23 9 3.9935 -1.0858 3.1632 24 9 4.9489 -0.9349 1.0025 25 1 -0.3633 0.5017 0.8968 26 1 -0.3634 0.5258 -0.8830 27 1 -0.3633 -1.0276 -0.0139 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5728 1.7027 -2.0017 31 1 0.8205 1.7299 -1.6902 32 1 1.0675 4.3802 -4.1457 33 1 3.8029 2.4630 0.2675 34 1 4.0132 0.7778 -0.2657 35 1 5.7297 1.1739 6.4910 36 1 7.3039 1.9781 6.2815 37 1 5.7974 2.8983 6.0549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893922449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:47 Heat of formation + Delta-G solvation = -165.899176 kcal Electronic energy + Delta-G solvation = -22186.613668 eV Core-core repulsion = 18407.571868 eV Total energy + Delta-G solvation = -3779.041800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.97342 -48.63339 -41.74226 -39.29534 -37.88075 -36.71665 -34.67641 -31.78256 -29.90475 -28.89926 -26.87301 -25.27787 -24.42497 -22.70355 -21.77014 -21.30700 -19.54327 -18.56392 -18.44950 -18.36179 -17.48140 -17.41845 -16.76258 -16.57113 -16.21049 -15.67461 -15.28629 -15.21245 -14.87424 -14.74176 -14.59344 -14.35948 -14.18770 -13.63271 -13.52728 -13.16355 -13.01076 -12.91768 -12.67965 -12.60617 -12.40689 -12.09960 -11.96750 -11.92712 -11.90218 -11.56178 -11.27270 -11.02980 -10.55962 -9.05605 -8.15825 -6.24854 0.56252 1.31319 1.43288 1.45203 1.57625 1.78880 1.96211 2.43364 2.75905 3.10541 3.18321 3.28193 3.49524 3.70703 3.98995 4.21742 4.26790 4.31056 4.33546 4.35023 4.48653 4.65922 4.68839 4.70646 4.89963 4.97649 5.07496 5.15066 5.26411 5.30717 5.39632 5.70891 6.10669 6.35958 6.46914 6.60039 6.90566 7.44475 8.94856 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.005121 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.914956 B = 5466.008738 C = 6506.260767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.048 3.952 3 N -0.540 5.540 4 C 0.206 3.794 5 C -0.517 4.517 6 H 0.063 0.937 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.964 3.036 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.089 3.911 14 C -0.094 4.094 15 H 0.142 0.858 16 C -0.152 4.152 17 H 0.190 0.810 18 C 0.497 3.503 19 O -0.515 6.515 20 O -0.352 6.352 21 C 0.026 3.974 22 C 0.225 3.775 23 F -0.158 7.158 24 F -0.148 7.148 25 H 0.058 0.942 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.021 0.979 29 H 0.075 0.925 30 H -0.033 1.033 31 H 0.017 0.983 32 H 0.263 0.737 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.139 0.861 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.276 -6.699 14.664 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 N -0.265 5.265 4 C 0.080 3.920 5 C -0.556 4.556 6 H 0.082 0.918 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.789 3.211 10 H -0.188 1.188 11 H -0.205 1.205 12 H -0.208 1.208 13 C -0.039 4.039 14 C -0.113 4.113 15 H 0.160 0.840 16 C -0.172 4.172 17 H 0.207 0.793 18 C 0.340 3.660 19 O -0.403 6.403 20 O -0.267 6.267 21 C -0.066 4.066 22 C 0.188 3.812 23 F -0.139 7.139 24 F -0.128 7.128 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.039 0.961 29 H 0.093 0.907 30 H -0.016 1.016 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.157 0.843 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.680 -6.386 15.075 19.020 hybrid contribution 0.266 0.229 -0.757 0.834 sum 9.946 -6.158 14.319 18.490 Atomic orbital electron populations 1.21708 0.94568 1.01666 1.01668 1.22118 0.96905 0.89194 0.99772 1.62067 1.16300 1.16135 1.31999 1.19453 0.94639 0.93840 0.84085 1.21503 1.45968 0.91788 0.96314 0.91848 1.25827 0.95004 1.03709 0.94842 1.70082 1.48650 1.36936 1.01830 0.85411 0.77622 0.79607 0.78432 1.18810 1.20467 1.20816 1.21527 0.90152 1.02177 0.90036 1.23766 0.94879 0.92788 0.99896 0.84000 1.23453 1.02795 0.97773 0.93185 0.79309 1.22139 0.81870 0.73424 0.88568 1.90707 1.37546 1.46136 1.65925 1.86464 1.31300 1.79990 1.28992 1.23689 1.06250 1.01210 0.75468 1.19913 1.01875 0.80874 0.78502 1.93050 1.90437 1.75005 1.55393 1.93055 1.86134 1.82302 1.51321 0.92292 0.94502 0.90528 0.96072 0.90654 1.01555 0.96535 0.92805 0.88977 0.93660 0.91679 0.84346 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.99 71.98 0.72 -3.93 16 2 C 0.05 1.70 5.55 86.30 0.48 2.18 16 3 N -0.54 -22.31 4.38 -900.78 -3.95 -26.26 16 4 C 0.21 10.54 4.59 85.56 0.39 10.93 16 5 C -0.52 -28.38 8.61 25.60 0.22 -28.16 16 6 H 0.06 3.42 7.66 -2.91 -0.02 3.39 16 7 C 0.00 0.23 5.46 84.66 0.46 0.69 16 8 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 9 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 C 0.09 3.11 5.05 86.31 0.44 3.54 16 14 C -0.09 -2.72 4.16 -10.79 -0.04 -2.76 16 15 H 0.14 4.50 7.67 -2.39 -0.02 4.48 16 16 C -0.15 -3.61 6.01 -11.54 -0.07 -3.68 16 17 H 0.19 3.39 8.14 -2.39 -0.02 3.37 16 18 C 0.50 12.69 7.37 71.24 0.53 13.22 16 19 O -0.51 -16.00 16.01 21.95 0.35 -15.65 16 20 O -0.35 -7.37 10.56 -51.37 -0.54 -7.91 16 21 C 0.03 0.38 10.56 113.37 1.20 1.58 16 22 C 0.23 5.97 4.96 30.59 0.15 6.12 16 23 F -0.16 -4.47 17.13 44.97 0.77 -3.70 16 24 F -0.15 -4.00 16.47 44.97 0.74 -3.26 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.04 1.41 6.52 -2.38 -0.02 1.40 16 27 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.02 0.77 8.05 -2.39 -0.02 0.75 16 29 H 0.08 2.36 6.74 -2.39 -0.02 2.35 16 30 H -0.03 -1.83 8.00 -2.39 -0.02 -1.85 16 31 H 0.02 0.92 6.24 -2.39 -0.01 0.91 16 32 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.09 3.40 7.32 -2.38 -0.02 3.38 16 34 H 0.05 1.54 7.04 -2.39 -0.02 1.52 16 35 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 36 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.97 8.13 -2.39 -0.02 0.96 16 Total: -1.00 -65.36 323.40 5.23 -60.13 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.07 Total: 6.19 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 4.47 Total: -0.27 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -3.66 Total: -81.12 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.19 Total: -23.55 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 1.51 Total: -6.96 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.36 5.23 -60.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893922449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.769 kcal (2) G-P(sol) polarization free energy of solvation -65.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds