Wall clock time and date at job start Mon Mar 30 2020 01:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46897 * 109.47048 * 2 1 4 4 C 1.46899 * 110.99820 * 301.07911 * 3 2 1 5 5 C 1.50696 * 109.47351 * 293.91992 * 4 3 2 6 6 H 1.08001 * 120.00443 * 355.15790 * 5 4 3 7 7 C 1.37882 * 120.00302 * 175.15963 * 5 4 3 8 8 N 1.31516 * 119.99729 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00370 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47435 * 59.99556 * 9 7 5 11 11 H 1.48499 * 109.47232 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46701 * 299.99638 * 9 7 5 13 13 C 1.46892 * 111.00373 * 65.03808 * 3 2 1 14 14 C 1.53001 * 109.47313 * 66.04298 * 13 3 2 15 15 H 1.08996 * 115.54352 * 29.33490 * 14 13 3 16 16 C 1.53003 * 117.49885 * 174.99946 * 14 13 3 17 17 H 1.08997 * 117.49703 * 0.02562 * 16 14 13 18 18 C 1.50697 * 117.49747 * 215.00425 * 16 14 13 19 19 O 1.20820 * 120.00577 * 0.02562 * 18 16 14 20 20 O 1.34229 * 119.99588 * 180.02562 * 18 16 14 21 21 C 1.45200 * 116.99934 * 180.02562 * 20 18 16 22 22 C 1.53004 * 117.52013 * 243.62992 * 14 13 3 23 23 F 1.39893 * 117.49604 * 145.03071 * 22 14 13 24 24 F 1.39903 * 117.49615 * 0.02562 * 22 14 13 25 25 H 1.09000 * 109.47555 * 301.43450 * 1 2 3 26 26 H 1.09001 * 109.47375 * 61.43989 * 1 2 3 27 27 H 1.09005 * 109.47174 * 181.43501 * 1 2 3 28 28 H 1.08997 * 109.47291 * 239.99239 * 2 1 3 29 29 H 1.09004 * 109.47188 * 119.99911 * 2 1 3 30 30 H 1.09002 * 109.46987 * 53.92140 * 4 3 2 31 31 H 1.09001 * 109.47317 * 173.91864 * 4 3 2 32 32 H 0.97000 * 120.00257 * 180.02562 * 8 7 5 33 33 H 1.09008 * 109.46964 * 306.04244 * 13 3 2 34 34 H 1.08997 * 109.47596 * 186.05140 * 13 3 2 35 35 H 1.09002 * 109.47193 * 299.99538 * 21 20 18 36 36 H 1.09000 * 109.47576 * 59.99729 * 21 20 18 37 37 H 1.09004 * 109.47420 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5276 2.1172 -1.1746 5 6 2.1283 1.5254 -2.4235 6 1 2.8669 0.7410 -2.3482 7 6 1.7350 1.9852 -3.6625 8 7 0.8352 2.9400 -3.7543 9 14 2.4791 1.2511 -5.2106 10 1 2.1866 -0.2040 -5.2585 11 1 1.8936 1.9138 -6.4036 12 1 3.9493 1.4603 -5.2004 13 6 1.6495 2.0743 1.2432 14 6 2.3819 1.4292 2.4215 15 1 3.3481 0.9828 2.1868 16 6 2.2200 2.0811 3.7963 17 1 1.5914 2.9691 3.8613 18 6 3.4087 2.0565 4.7223 19 8 4.4398 1.5358 4.3682 20 8 3.3219 2.6133 5.9405 21 6 4.5060 2.5532 6.7787 22 6 1.5311 0.7484 3.4956 23 9 2.0530 -0.3996 4.1013 24 9 0.1426 0.7626 3.3250 25 1 -0.3634 0.5359 0.8768 26 1 -0.3634 0.4913 -0.9026 27 1 -0.3634 -1.0274 0.0257 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.4413 2.0401 -1.2220 31 1 1.8142 3.1659 -1.0953 32 1 0.5583 3.2632 -4.6259 33 1 0.5732 1.9941 1.3965 34 1 1.9290 3.1254 1.1730 35 1 4.7764 1.5115 6.9514 36 1 5.3299 3.0646 6.2809 37 1 4.3009 3.0387 7.7328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893922450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:49 Heat of formation + Delta-G solvation = -144.161881 kcal Electronic energy + Delta-G solvation = -22248.968923 eV Core-core repulsion = 18470.869723 eV Total energy + Delta-G solvation = -3778.099200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.83879 -47.49800 -40.75557 -38.09757 -36.83503 -35.51691 -32.56198 -29.67061 -28.69893 -27.71339 -25.24426 -24.26077 -23.19654 -21.50467 -20.62031 -19.45372 -18.36689 -17.41340 -17.32971 -16.51965 -16.42333 -16.12830 -15.60050 -15.07284 -14.86647 -14.21594 -14.07837 -13.86395 -13.71049 -13.61388 -13.43603 -12.88977 -12.62195 -12.39215 -12.15320 -11.89958 -11.68166 -11.27610 -11.09285 -11.07598 -10.93497 -10.75324 -10.68711 -10.51973 -10.18204 -10.01995 -9.68980 -9.24109 -8.44049 -7.28933 -6.03829 -4.04802 1.59882 2.22320 2.91189 3.03249 3.33857 3.37870 3.41008 3.89826 4.18775 4.38469 4.43990 4.62051 4.82983 4.91821 5.04496 5.18526 5.27045 5.32175 5.35870 5.62147 5.81216 5.84704 6.02818 6.05126 6.14434 6.19110 6.46967 6.70617 6.91954 7.24840 7.39750 7.43132 7.77666 8.03190 8.13060 8.50024 9.02687 9.59404 11.06860 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.004141 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.527106 B = 6759.803920 C = 7185.326490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 N -0.531 5.531 4 C 0.188 3.812 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.071 3.929 14 C -0.086 4.086 15 H 0.153 0.847 16 C -0.174 4.174 17 H 0.160 0.840 18 C 0.495 3.505 19 O -0.485 6.485 20 O -0.353 6.353 21 C 0.035 3.965 22 C 0.225 3.775 23 F -0.154 7.154 24 F -0.146 7.146 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.007 0.993 31 H 0.026 0.974 32 H 0.262 0.738 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 -1.007 18.683 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.069 4.069 3 N -0.255 5.255 4 C 0.064 3.936 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.058 4.058 14 C -0.106 4.106 15 H 0.171 0.829 16 C -0.195 4.195 17 H 0.178 0.822 18 C 0.337 3.663 19 O -0.371 6.371 20 O -0.269 6.269 21 C -0.058 4.058 22 C 0.188 3.812 23 F -0.134 7.134 24 F -0.126 7.126 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.463 -1.097 18.442 18.638 hybrid contribution -0.559 -0.416 -0.513 0.865 sum 1.903 -1.513 17.929 18.093 Atomic orbital electron populations 1.22395 0.99072 1.01093 1.02339 1.21983 0.92469 0.91091 1.01323 1.62361 1.59475 1.02193 1.01472 1.19813 0.94514 0.93430 0.85860 1.21087 1.23131 1.20440 0.89809 0.91881 1.24967 0.95186 0.95212 0.99151 1.69940 1.31295 1.28080 1.24572 0.86570 0.79486 0.79215 0.82207 1.20278 1.21422 1.20177 1.21713 0.96838 0.98481 0.88725 1.24052 1.01823 0.96080 0.88616 0.82944 1.23407 0.98121 0.99606 0.98370 0.82195 1.22072 0.88200 0.75138 0.80937 1.90715 1.30684 1.40750 1.74967 1.86472 1.41665 1.72344 1.26468 1.23337 0.85893 1.03108 0.93480 1.19939 0.76580 0.81725 1.02966 1.93057 1.85382 1.50913 1.84054 1.93051 1.27870 1.96368 1.95337 0.93449 0.90969 0.93430 0.89846 0.93291 0.97530 0.95549 0.92879 0.93349 0.89261 0.91657 0.91528 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.44 9.24 37.16 0.34 -3.10 16 2 C 0.06 1.13 5.70 -3.83 -0.02 1.11 16 3 N -0.53 -10.80 4.70 -236.08 -1.11 -11.91 16 4 C 0.19 4.65 4.46 -4.98 -0.02 4.63 16 5 C -0.51 -13.76 8.43 -34.44 -0.29 -14.05 16 6 H 0.06 1.71 7.29 -52.49 -0.38 1.33 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 9 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 C 0.07 1.17 5.06 -3.83 -0.02 1.15 16 14 C -0.09 -1.24 4.22 -90.62 -0.38 -1.62 16 15 H 0.15 2.38 7.67 -51.93 -0.40 1.98 16 16 C -0.17 -2.10 6.01 -91.77 -0.55 -2.66 16 17 H 0.16 1.50 8.14 -51.93 -0.42 1.08 16 18 C 0.50 6.41 7.37 36.00 0.27 6.67 16 19 O -0.49 -7.50 16.01 -18.75 -0.30 -7.80 16 20 O -0.35 -3.89 10.57 -39.26 -0.41 -4.30 16 21 C 0.04 0.28 10.56 101.05 1.07 1.34 16 22 C 0.23 3.09 5.14 -26.73 -0.14 2.95 16 23 F -0.15 -2.28 17.13 2.25 0.04 -2.24 16 24 F -0.15 -2.06 15.82 2.25 0.04 -2.03 16 25 H 0.05 0.80 5.67 -51.93 -0.29 0.51 16 26 H 0.07 1.50 6.33 -51.93 -0.33 1.17 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.72 6.99 -51.93 -0.36 1.36 16 29 H 0.05 0.84 7.13 -51.93 -0.37 0.47 16 30 H 0.01 0.18 6.00 -51.93 -0.31 -0.13 16 31 H 0.03 0.69 7.93 -51.93 -0.41 0.28 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.05 0.79 5.07 -51.92 -0.26 0.52 16 34 H 0.09 1.41 7.93 -51.93 -0.41 0.99 16 35 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 36 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 317.02 15.07 4.78 4.78 Total: -1.00 -30.33 317.02 -5.89 -36.22 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -4.78 Total: -1.61 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 0.15 Total: -2.11 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.37 Total: -37.25 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.71 Total: -12.10 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.07 Total: -4.26 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.33 -5.89 -36.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893922450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.942 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds