Wall clock time and date at job start Mon Mar 30 2020 01:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46897 * 109.47048 * 2 1 4 4 C 1.46899 * 110.99820 * 301.07911 * 3 2 1 5 5 C 1.50696 * 109.47351 * 293.91992 * 4 3 2 6 6 H 1.08001 * 120.00443 * 355.15790 * 5 4 3 7 7 C 1.37882 * 120.00302 * 175.15963 * 5 4 3 8 8 N 1.31516 * 119.99729 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00370 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47435 * 59.99556 * 9 7 5 11 11 H 1.48499 * 109.47232 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46701 * 299.99638 * 9 7 5 13 13 C 1.46892 * 111.00373 * 65.03808 * 3 2 1 14 14 C 1.53001 * 109.47313 * 66.04298 * 13 3 2 15 15 H 1.08996 * 115.54352 * 29.33490 * 14 13 3 16 16 C 1.53003 * 117.49885 * 174.99946 * 14 13 3 17 17 H 1.08997 * 117.49703 * 0.02562 * 16 14 13 18 18 C 1.50697 * 117.49747 * 215.00425 * 16 14 13 19 19 O 1.20820 * 120.00577 * 0.02562 * 18 16 14 20 20 O 1.34229 * 119.99588 * 180.02562 * 18 16 14 21 21 C 1.45200 * 116.99934 * 180.02562 * 20 18 16 22 22 C 1.53004 * 117.52013 * 243.62992 * 14 13 3 23 23 F 1.39893 * 117.49604 * 145.03071 * 22 14 13 24 24 F 1.39903 * 117.49615 * 0.02562 * 22 14 13 25 25 H 1.09000 * 109.47555 * 301.43450 * 1 2 3 26 26 H 1.09001 * 109.47375 * 61.43989 * 1 2 3 27 27 H 1.09005 * 109.47174 * 181.43501 * 1 2 3 28 28 H 1.08997 * 109.47291 * 239.99239 * 2 1 3 29 29 H 1.09004 * 109.47188 * 119.99911 * 2 1 3 30 30 H 1.09002 * 109.46987 * 53.92140 * 4 3 2 31 31 H 1.09001 * 109.47317 * 173.91864 * 4 3 2 32 32 H 0.97000 * 120.00257 * 180.02562 * 8 7 5 33 33 H 1.09008 * 109.46964 * 306.04244 * 13 3 2 34 34 H 1.08997 * 109.47596 * 186.05140 * 13 3 2 35 35 H 1.09002 * 109.47193 * 299.99538 * 21 20 18 36 36 H 1.09000 * 109.47576 * 59.99729 * 21 20 18 37 37 H 1.09004 * 109.47420 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5276 2.1172 -1.1746 5 6 2.1283 1.5254 -2.4235 6 1 2.8669 0.7410 -2.3482 7 6 1.7350 1.9852 -3.6625 8 7 0.8352 2.9400 -3.7543 9 14 2.4791 1.2511 -5.2106 10 1 2.1866 -0.2040 -5.2585 11 1 1.8936 1.9138 -6.4036 12 1 3.9493 1.4603 -5.2004 13 6 1.6495 2.0743 1.2432 14 6 2.3819 1.4292 2.4215 15 1 3.3481 0.9828 2.1868 16 6 2.2200 2.0811 3.7963 17 1 1.5914 2.9691 3.8613 18 6 3.4087 2.0565 4.7223 19 8 4.4398 1.5358 4.3682 20 8 3.3219 2.6133 5.9405 21 6 4.5060 2.5532 6.7787 22 6 1.5311 0.7484 3.4956 23 9 2.0530 -0.3996 4.1013 24 9 0.1426 0.7626 3.3250 25 1 -0.3634 0.5359 0.8768 26 1 -0.3634 0.4913 -0.9026 27 1 -0.3634 -1.0274 0.0257 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.4413 2.0401 -1.2220 31 1 1.8142 3.1659 -1.0953 32 1 0.5583 3.2632 -4.6259 33 1 0.5732 1.9941 1.3965 34 1 1.9290 3.1254 1.1730 35 1 4.7764 1.5115 6.9514 36 1 5.3299 3.0646 6.2809 37 1 4.3009 3.0387 7.7328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893922450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:49 Heat of formation + Delta-G solvation = -162.802142 kcal Electronic energy + Delta-G solvation = -22249.777225 eV Core-core repulsion = 18470.869723 eV Total energy + Delta-G solvation = -3778.907502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.95300 -48.61521 -41.74038 -39.46588 -37.93158 -36.76488 -34.62249 -31.17610 -30.04179 -28.93639 -26.76596 -25.40688 -24.92261 -22.78428 -21.72617 -20.91222 -19.47070 -18.45827 -18.40238 -18.25490 -17.49696 -17.47200 -16.83963 -16.57459 -16.38754 -15.92595 -15.25121 -14.93881 -14.88092 -14.74029 -14.48028 -14.36397 -14.10273 -13.69102 -13.50065 -13.17042 -13.07159 -12.92688 -12.76667 -12.54860 -12.35695 -12.04345 -11.97986 -11.90024 -11.83776 -11.61553 -11.25806 -11.00862 -10.55207 -8.95965 -8.15787 -6.23861 0.56742 1.31780 1.43830 1.45699 1.53410 1.81896 1.97615 2.43020 2.78366 3.13425 3.17624 3.30177 3.55273 3.70836 4.00119 4.26597 4.27375 4.31458 4.34461 4.39342 4.40832 4.65592 4.69267 4.69803 4.81526 5.03246 5.03505 5.15653 5.26347 5.40316 5.52185 5.70952 6.10723 6.33060 6.47522 6.64660 6.91701 7.44982 8.94466 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.004141 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.527106 B = 6759.803920 C = 7185.326490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.062 3.938 3 N -0.541 5.541 4 C 0.203 3.797 5 C -0.519 4.519 6 H 0.059 0.941 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.961 3.039 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.075 3.925 14 C -0.094 4.094 15 H 0.140 0.860 16 C -0.149 4.149 17 H 0.193 0.807 18 C 0.496 3.504 19 O -0.515 6.515 20 O -0.351 6.351 21 C 0.026 3.974 22 C 0.224 3.776 23 F -0.161 7.161 24 F -0.147 7.147 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.071 0.929 30 H -0.012 1.012 31 H 0.005 0.995 32 H 0.263 0.737 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.937 -1.194 20.003 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.067 4.067 3 N -0.264 5.264 4 C 0.077 3.923 5 C -0.558 4.558 6 H 0.077 0.923 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.787 3.213 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.196 1.196 13 C -0.053 4.053 14 C -0.114 4.114 15 H 0.158 0.842 16 C -0.169 4.169 17 H 0.210 0.790 18 C 0.339 3.661 19 O -0.404 6.404 20 O -0.267 6.267 21 C -0.066 4.066 22 C 0.187 3.813 23 F -0.141 7.141 24 F -0.127 7.127 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.006 0.994 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.670 -1.289 19.798 20.018 hybrid contribution -0.597 -0.350 -0.801 1.059 sum 2.072 -1.638 18.996 19.179 Atomic orbital electron populations 1.22277 0.98275 1.02178 1.01158 1.21961 0.93078 0.90269 1.01347 1.62206 1.59771 1.02730 1.01729 1.19452 0.93108 0.92543 0.87170 1.21408 1.22974 1.20260 0.91143 0.92278 1.25782 0.95577 0.95570 1.02316 1.70054 1.32572 1.29353 1.25309 0.85557 0.78753 0.78664 0.78374 1.19487 1.21012 1.19611 1.21686 0.97419 0.98606 0.87601 1.23724 1.01221 0.97441 0.88966 0.84190 1.23459 0.97606 0.99778 0.96069 0.79022 1.22173 0.87803 0.74592 0.81528 1.90711 1.31883 1.42134 1.75647 1.86466 1.43034 1.71524 1.25691 1.23684 0.85052 1.03590 0.94286 1.19931 0.76383 0.82247 1.02744 1.93045 1.85494 1.51496 1.84061 1.93051 1.27896 1.96395 1.95361 0.92279 0.94216 0.91342 0.91926 0.91059 0.99448 0.97685 0.92813 0.92814 0.88788 0.91809 0.91460 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.42 9.24 71.98 0.66 -5.76 16 2 C 0.06 2.32 5.70 86.30 0.49 2.81 16 3 N -0.54 -22.07 4.70 -900.83 -4.24 -26.31 16 4 C 0.20 10.26 4.46 85.56 0.38 10.65 16 5 C -0.52 -28.71 8.43 25.60 0.22 -28.49 16 6 H 0.06 3.24 7.29 -2.91 -0.02 3.22 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -54.89 13.29 21.45 0.28 -54.61 16 9 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.08 2.40 5.06 86.31 0.44 2.83 16 14 C -0.09 -2.57 4.22 -10.79 -0.05 -2.61 16 15 H 0.14 4.28 7.67 -2.39 -0.02 4.26 16 16 C -0.15 -3.25 6.01 -11.54 -0.07 -3.32 16 17 H 0.19 2.93 8.14 -2.39 -0.02 2.91 16 18 C 0.50 11.93 7.37 71.24 0.53 12.45 16 19 O -0.52 -15.40 16.01 21.98 0.35 -15.05 16 20 O -0.35 -6.88 10.57 -51.41 -0.54 -7.42 16 21 C 0.03 0.35 10.56 113.37 1.20 1.55 16 22 C 0.22 5.72 5.14 30.60 0.16 5.88 16 23 F -0.16 -4.51 17.13 44.97 0.77 -3.74 16 24 F -0.15 -3.82 15.82 44.97 0.71 -3.10 16 25 H 0.06 1.94 5.67 -2.39 -0.01 1.92 16 26 H 0.04 1.67 6.33 -2.39 -0.02 1.65 16 27 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.06 2.60 6.99 -2.39 -0.02 2.58 16 29 H 0.07 2.36 7.13 -2.38 -0.02 2.34 16 30 H -0.01 -0.66 6.00 -2.39 -0.01 -0.67 16 31 H 0.01 0.27 7.93 -2.39 -0.02 0.26 16 32 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.05 1.68 5.07 -2.38 -0.01 1.66 16 34 H 0.09 2.89 7.93 -2.39 -0.02 2.87 16 35 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 36 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 37 H 0.14 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -65.37 317.02 4.87 -60.50 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.09 Total: 6.96 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 4.42 Total: -3.24 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -3.95 Total: -80.92 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.19 Total: -22.47 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 1.48 Total: -6.84 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -65.37 4.87 -60.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893922450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.305 kcal (2) G-P(sol) polarization free energy of solvation -65.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds