Wall clock time and date at job start Mon Mar 30 2020 01:55:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46891 * 109.47295 * 2 1
4 4 C 1.46893 * 111.00286 * 287.86355 * 3 2 1
5 5 C 1.50703 * 109.47783 * 160.36423 * 4 3 2
6 6 H 1.08007 * 119.99361 * 4.65958 * 5 4 3
7 7 C 1.37869 * 120.00362 * 184.66638 * 5 4 3
8 8 N 1.31510 * 120.00321 * 359.97438 * 7 5 4
9 9 Si 1.86798 * 120.00041 * 179.97438 * 7 5 4
10 10 H 1.48501 * 109.47416 * 59.99868 * 9 7 5
11 11 H 1.48503 * 109.47551 * 179.97438 * 9 7 5
12 12 H 1.48511 * 109.47323 * 299.99681 * 9 7 5
13 13 C 1.46905 * 111.00052 * 163.90796 * 3 2 1
14 14 C 1.52994 * 109.47469 * 293.95530 * 13 3 2
15 15 H 1.09001 * 115.54814 * 29.27336 * 14 13 3
16 16 C 1.53072 * 117.51722 * 174.99890 * 14 13 3
17 17 H 1.09001 * 117.49688 * 214.96358 * 16 14 13
18 18 C 1.50706 * 117.51160 * 359.97438 * 16 14 13
19 19 O 1.20827 * 119.99512 * 0.02562 * 18 16 14
20 20 O 1.34229 * 119.99880 * 180.02562 * 18 16 14
21 21 C 1.45200 * 116.99415 * 180.02562 * 20 18 16
22 22 C 1.52995 * 59.98532 * 107.47612 * 16 14 13
23 23 F 1.39893 * 117.50283 * 252.50219 * 22 16 14
24 24 F 1.39906 * 117.49811 * 107.50343 * 22 16 14
25 25 H 1.08997 * 109.46923 * 299.35429 * 1 2 3
26 26 H 1.09004 * 109.46676 * 59.35027 * 1 2 3
27 27 H 1.09000 * 109.47292 * 179.34819 * 1 2 3
28 28 H 1.08996 * 109.47488 * 239.99463 * 2 1 3
29 29 H 1.09005 * 109.46745 * 119.99986 * 2 1 3
30 30 H 1.09007 * 109.47243 * 280.36557 * 4 3 2
31 31 H 1.09002 * 109.47044 * 40.36021 * 4 3 2
32 32 H 0.97003 * 120.00544 * 179.97438 * 8 7 5
33 33 H 1.09005 * 109.47256 * 173.95024 * 13 3 2
34 34 H 1.09005 * 109.46809 * 53.95851 * 13 3 2
35 35 H 1.08999 * 109.47306 * 299.99768 * 21 20 18
36 36 H 1.08997 * 109.47585 * 60.00481 * 21 20 18
37 37 H 1.09004 * 109.46541 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 1.7986 2.0215 -1.3052
5 6 1.8497 3.5195 -1.1488
6 1 2.1029 3.9542 -0.1930
7 6 1.5732 4.3349 -2.2255
8 7 1.2653 3.8056 -3.3894
9 14 1.6359 6.1917 -2.0313
10 1 3.0011 6.6000 -1.6134
11 1 1.3018 6.8366 -3.3266
12 1 0.6551 6.6150 -0.9996
13 6 3.4376 1.4420 0.3801
14 6 3.5933 1.0009 1.8368
15 1 2.8507 0.2873 2.1938
16 6 5.0150 0.8785 2.3906
17 1 5.2076 0.0842 3.1118
18 6 6.1551 1.2012 1.4592
19 8 5.9284 1.5420 0.3224
20 8 7.4222 1.1100 1.8927
21 6 8.4693 1.4364 0.9412
22 6 4.1171 2.0345 2.8358
23 9 4.4171 3.3106 2.3474
24 9 3.6064 1.9914 4.1376
25 1 -0.3633 0.5038 0.8957
26 1 -0.3633 0.5239 -0.8842
27 1 -0.3634 -1.0276 -0.0117
28 1 1.8934 -0.5139 -0.8899
29 1 1.8933 -0.5139 0.8900
30 1 2.5744 1.7022 -2.0013
31 1 0.8219 1.7296 -1.6910
32 1 1.0704 4.3793 -4.1469
33 1 3.8029 2.4629 0.2686
34 1 4.0135 0.7777 -0.2642
35 1 8.4038 0.7656 0.0845
36 1 8.3478 2.4665 0.6063
37 1 9.4425 1.3216 1.4185
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000893922451.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:55:51
Heat of formation + Delta-G solvation = -139.794522 kcal
Electronic energy + Delta-G solvation = -22638.844039 eV
Core-core repulsion = 18860.934222 eV
Total energy + Delta-G solvation = -3777.909817 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 277.128 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-48.65144 -47.31146 -40.64986 -37.89380 -36.48822 -35.32729 -32.53948 -30.21174
-28.48402 -27.46572 -25.18720 -24.12841 -22.60408 -21.51883 -20.45353 -19.70525
-18.19144 -17.36499 -17.01417 -16.39831 -16.30402 -16.21842 -15.42724 -14.79278
-14.57642 -13.96901 -13.89421 -13.74824 -13.46319 -13.30759 -13.29370 -13.26573
-12.83927 -12.22271 -12.01585 -11.88178 -11.37145 -11.19484 -11.07539 -10.90428
-10.81308 -10.78313 -10.62014 -10.27779 -10.20621 -9.76091 -9.61471 -9.15782
-8.33853 -7.22837 -5.94657 -3.94698 1.77017 2.39520 3.08457 3.16744
3.40580 3.43012 3.47726 3.90814 4.37094 4.50729 4.55480 4.68926
4.99143 5.07532 5.09564 5.31288 5.38898 5.43264 5.44775 5.58843
5.71828 5.90341 6.11072 6.17495 6.30391 6.33346 6.57025 6.76533
6.83158 7.27885 7.39306 7.63711 7.88878 8.16415 8.23056 8.59847
9.12138 9.68779 11.16090
Molecular weight = 277.13amu
Principal moments of inertia in cm(-1)
A = 0.014253 B = 0.006261 C = 0.005508
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1964.011529 B = 4471.036782 C = 5081.857772
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.046 3.954
3 N -0.538 5.538
4 C 0.194 3.806
5 C -0.501 4.501
6 H 0.062 0.938
7 C 0.055 3.945
8 N -0.901 5.901
9 Si 0.895 3.105
10 H -0.277 1.277
11 H -0.289 1.289
12 H -0.276 1.276
13 C 0.091 3.909
14 C -0.095 4.095
15 H 0.146 0.854
16 C -0.178 4.178
17 H 0.158 0.842
18 C 0.486 3.514
19 O -0.468 6.468
20 O -0.358 6.358
21 C 0.036 3.964
22 C 0.235 3.765
23 F -0.143 7.143
24 F -0.153 7.153
25 H 0.057 0.943
26 H 0.062 0.938
27 H 0.044 0.956
28 H 0.023 0.977
29 H 0.056 0.944
30 H -0.010 1.010
31 H 0.039 0.961
32 H 0.261 0.739
33 H 0.101 0.899
34 H 0.052 0.948
35 H 0.065 0.935
36 H 0.066 0.934
37 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.733 -9.009 11.813 17.760
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.082 4.082
3 N -0.263 5.263
4 C 0.069 3.931
5 C -0.540 4.540
6 H 0.080 0.920
7 C -0.145 4.145
8 N -0.541 5.541
9 Si 0.723 3.277
10 H -0.203 1.203
11 H -0.214 1.214
12 H -0.202 1.202
13 C -0.037 4.037
14 C -0.115 4.115
15 H 0.164 0.836
16 C -0.199 4.199
17 H 0.175 0.825
18 C 0.327 3.673
19 O -0.352 6.352
20 O -0.275 6.275
21 C -0.058 4.058
22 C 0.197 3.803
23 F -0.123 7.123
24 F -0.133 7.133
25 H 0.076 0.924
26 H 0.081 0.919
27 H 0.063 0.937
28 H 0.042 0.958
29 H 0.074 0.926
30 H 0.008 0.992
31 H 0.057 0.943
32 H 0.070 0.930
33 H 0.120 0.880
34 H 0.070 0.930
35 H 0.084 0.916
36 H 0.085 0.915
37 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 9.370 -8.527 11.608 17.183
hybrid contribution 0.689 0.751 -0.478 1.126
sum 10.058 -7.776 11.130 16.897
Atomic orbital electron populations
1.21747 0.95390 0.99925 1.03056 1.22069 0.96158 0.91100 0.98909
1.62186 1.15219 1.14134 1.34755 1.19757 0.96512 0.94233 0.82557
1.21129 1.45904 0.90654 0.96294 0.91991 1.24949 0.95555 0.98834
0.95207 1.69942 1.48008 1.35248 1.00944 0.86602 0.78593 0.85423
0.77064 1.20287 1.21427 1.20172 1.21712 0.90411 1.03465 0.88131
1.24102 0.91906 0.97403 0.98051 0.83645 1.23434 0.91143 1.02470
1.02810 0.82482 1.22145 0.83222 0.74990 0.86985 1.90823 1.84420
1.40600 1.19400 1.86446 1.15770 1.80450 1.44790 1.23312 0.87990
1.01899 0.92579 1.19696 1.01315 0.78761 0.80490 1.93089 1.93111
1.39520 1.86611 1.93046 1.87083 1.96404 1.36815 0.92381 0.91904
0.93671 0.95841 0.92594 0.99180 0.94334 0.92987 0.88043 0.93047
0.91633 0.91483 0.88041
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.39 9.99 37.16 0.37 -2.02 16
2 C 0.05 0.81 5.52 -3.83 -0.02 0.79 16
3 N -0.54 -11.56 4.38 -236.07 -1.03 -12.60 16
4 C 0.19 5.12 4.59 -4.98 -0.02 5.10 16
5 C -0.50 -14.50 8.61 -34.44 -0.30 -14.79 16
6 H 0.06 1.80 7.66 -52.48 -0.40 1.40 16
7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16
8 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16
9 Si 0.90 22.48 29.54 -169.99 -5.02 17.46 16
10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16
12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
13 C 0.09 1.79 3.31 -3.82 -0.01 1.77 16
14 C -0.10 -1.42 5.57 -90.59 -0.50 -1.93 16
15 H 0.15 1.84 6.40 -51.93 -0.33 1.51 16
16 C -0.18 -2.25 6.29 -91.73 -0.58 -2.83 16
17 H 0.16 1.37 8.14 -51.93 -0.42 0.95 16
18 C 0.49 7.07 7.36 36.01 0.26 7.34 16
19 O -0.47 -8.41 12.87 -18.75 -0.24 -8.65 16
20 O -0.36 -4.43 10.57 -39.26 -0.41 -4.85 16
21 C 0.04 0.35 10.56 101.05 1.07 1.41 16
22 C 0.23 3.57 5.13 -26.73 -0.14 3.44 16
23 F -0.14 -2.63 16.01 2.25 0.04 -2.59 16
24 F -0.15 -2.20 17.60 2.25 0.04 -2.16 16
25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
26 H 0.06 1.19 6.53 -51.93 -0.34 0.85 16
27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16
28 H 0.02 0.42 8.05 -51.93 -0.42 0.01 16
29 H 0.06 0.81 6.02 -51.93 -0.31 0.50 16
30 H -0.01 -0.27 8.00 -51.93 -0.42 -0.69 16
31 H 0.04 1.07 6.25 -51.93 -0.32 0.74 16
32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
33 H 0.10 2.34 5.66 -51.93 -0.29 2.05 16
34 H 0.05 1.04 6.91 -51.93 -0.36 0.68 16
35 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16
36 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16
37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
LS Contribution 316.57 15.07 4.77 4.77
Total: -1.00 -32.54 316.57 -5.96 -38.50
By element:
Atomic # 1 Polarization: 1.76 SS G_CDS: -4.87 Total: -3.10 kcal
Atomic # 6 Polarization: -0.23 SS G_CDS: 0.03 Total: -0.20 kcal
Atomic # 7 Polarization: -38.88 SS G_CDS: -0.30 Total: -39.18 kcal
Atomic # 8 Polarization: -12.84 SS G_CDS: -0.66 Total: -13.50 kcal
Atomic # 9 Polarization: -4.83 SS G_CDS: 0.08 Total: -4.75 kcal
Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal
Total LS contribution 4.77 Total: 4.77 kcal
Total: -32.54 -5.96 -38.50 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000893922451.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -101.293 kcal
(2) G-P(sol) polarization free energy of solvation -32.541 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.833 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds