Wall clock time and date at job start Mon Mar 30 2020 01:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46892 * 109.47312 * 2 1 4 4 C 1.46900 * 111.00483 * 297.57585 * 3 2 1 5 5 C 1.50707 * 109.46590 * 292.66045 * 4 3 2 6 6 H 1.08000 * 120.00149 * 354.97387 * 5 4 3 7 7 C 1.37879 * 119.99518 * 174.97021 * 5 4 3 8 8 N 1.31514 * 120.00141 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99691 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47187 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47017 * 119.99780 * 9 7 5 12 12 H 1.48497 * 109.47567 * 239.99824 * 9 7 5 13 13 C 1.46903 * 111.00018 * 61.52798 * 3 2 1 14 14 C 1.53001 * 109.47154 * 66.04352 * 13 3 2 15 15 H 1.09002 * 115.54651 * 330.67154 * 14 13 3 16 16 C 1.53003 * 117.49899 * 185.00244 * 14 13 3 17 17 H 1.08996 * 117.49964 * 144.99758 * 16 14 13 18 18 C 1.50698 * 117.50043 * 0.02562 * 16 14 13 19 19 O 1.20834 * 119.99849 * 0.08726 * 18 16 14 20 20 O 1.34227 * 120.00232 * 180.08800 * 18 16 14 21 21 C 1.45205 * 116.99899 * 180.02562 * 20 18 16 22 22 C 1.52999 * 60.00008 * 252.48825 * 16 14 13 23 23 F 1.39898 * 117.50144 * 107.48713 * 22 16 14 24 24 F 1.39898 * 117.49657 * 252.51380 * 22 16 14 25 25 H 1.09000 * 109.47275 * 299.36827 * 1 2 3 26 26 H 1.09000 * 109.47385 * 59.36662 * 1 2 3 27 27 H 1.08996 * 109.47502 * 179.37060 * 1 2 3 28 28 H 1.09005 * 109.46632 * 239.99845 * 2 1 3 29 29 H 1.08997 * 109.46854 * 120.00623 * 2 1 3 30 30 H 1.09001 * 109.47394 * 52.65338 * 4 3 2 31 31 H 1.08996 * 109.47267 * 172.66104 * 4 3 2 32 32 H 0.96997 * 119.99754 * 179.97438 * 8 7 5 33 33 H 1.09008 * 109.46808 * 306.04590 * 13 3 2 34 34 H 1.08993 * 109.47340 * 186.04726 * 13 3 2 35 35 H 1.09001 * 109.46551 * 179.97438 * 21 20 18 36 36 H 1.09002 * 109.46772 * 299.99699 * 21 20 18 37 37 H 1.09001 * 109.46974 * 59.99797 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5967 2.0930 -1.2156 5 6 2.2919 1.4960 -2.4121 6 1 3.0392 0.7284 -2.2752 7 6 1.9737 1.9299 -3.6816 8 7 1.0633 2.8642 -3.8483 9 14 2.8359 1.1906 -5.1647 10 1 3.8099 0.1656 -4.7109 11 1 1.8313 0.5575 -6.0565 12 1 3.5512 2.2603 -5.9057 13 6 1.5788 2.0992 1.2056 14 6 2.2416 1.4787 2.4371 15 1 2.4795 0.4179 2.3585 16 6 1.8193 2.0084 3.8090 17 1 1.7793 1.2961 4.6330 18 6 0.7819 3.1009 3.8439 19 8 0.3155 3.5243 2.8127 20 8 0.3759 3.6037 5.0203 21 6 -0.6264 4.6535 4.9780 22 6 3.1974 2.3593 3.2446 23 9 3.3988 3.6704 2.8002 24 9 4.3098 1.7412 3.8256 25 1 -0.3634 0.5040 0.8956 26 1 -0.3634 0.5236 -0.8842 27 1 -0.3634 -1.0275 -0.0113 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.5178 1.9953 -1.3362 31 1 1.8590 3.1476 -1.1317 32 1 0.8398 3.1697 -4.7414 33 1 0.4954 2.0215 1.2981 34 1 1.8626 3.1488 1.1302 35 1 -0.8648 4.9692 5.9936 36 1 -0.2395 5.5025 4.4144 37 1 -1.5273 4.2763 4.4941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893922452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:53 Heat of formation + Delta-G solvation = -137.586580 kcal Electronic energy + Delta-G solvation = -22526.119656 eV Core-core repulsion = 18748.305583 eV Total energy + Delta-G solvation = -3777.814073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.74540 -47.41073 -40.74109 -38.07317 -36.63658 -35.44663 -32.52725 -29.58600 -28.59608 -27.64191 -25.10833 -24.29055 -23.24681 -21.53132 -20.52741 -19.41861 -18.15200 -17.45284 -17.05644 -16.38574 -16.32988 -16.13670 -15.48007 -15.07385 -14.77924 -14.19491 -13.99721 -13.65732 -13.61928 -13.49569 -13.38549 -13.01418 -12.81255 -12.29527 -11.90814 -11.82520 -11.72004 -11.20245 -11.10876 -10.97652 -10.95694 -10.64376 -10.55381 -10.28273 -10.15873 -9.86196 -9.64449 -9.15084 -8.39120 -7.16029 -5.98183 -3.99225 1.68333 2.32175 2.99874 3.09077 3.33564 3.41069 3.45807 3.84963 4.30113 4.46222 4.47820 4.62968 4.92209 5.01701 5.15787 5.26560 5.35639 5.36970 5.38641 5.56387 5.77599 5.92979 6.05914 6.12404 6.26231 6.37527 6.57012 6.71536 6.91287 7.34803 7.48500 7.54953 7.84801 8.13729 8.21752 8.57951 9.09087 9.64643 11.12493 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.004766 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.392400 B = 5873.911179 C = 6229.132320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.057 3.943 3 N -0.537 5.537 4 C 0.191 3.809 5 C -0.504 4.504 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.078 3.922 14 C -0.091 4.091 15 H 0.148 0.852 16 C -0.178 4.178 17 H 0.159 0.841 18 C 0.488 3.512 19 O -0.473 6.473 20 O -0.357 6.357 21 C 0.036 3.964 22 C 0.233 3.767 23 F -0.147 7.147 24 F -0.152 7.152 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.005 0.995 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 -1.598 18.750 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.071 4.071 3 N -0.261 5.261 4 C 0.066 3.934 5 C -0.542 4.542 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.050 4.050 14 C -0.111 4.111 15 H 0.166 0.834 16 C -0.199 4.199 17 H 0.176 0.824 18 C 0.329 3.671 19 O -0.358 6.358 20 O -0.273 6.273 21 C -0.058 4.058 22 C 0.196 3.804 23 F -0.127 7.127 24 F -0.132 7.132 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.454 -1.302 18.291 18.395 hybrid contribution -0.446 -0.015 -0.683 0.816 sum -1.900 -1.317 17.608 17.759 Atomic orbital electron populations 1.22393 0.99392 1.00960 1.02131 1.22033 0.92170 0.91665 1.01274 1.62358 1.59273 1.01928 1.02513 1.19768 0.94927 0.93757 0.84957 1.21192 1.21528 1.21459 0.90054 0.91809 1.24982 0.95330 0.95292 0.99029 1.69976 1.32138 1.29429 1.22302 0.86472 0.79427 0.79061 0.82640 1.19653 1.21205 1.21083 1.21799 0.97604 0.98268 0.87358 1.24043 0.94615 1.01363 0.91033 0.83407 1.23438 0.92934 1.00084 1.03407 0.82388 1.22148 0.81416 0.81576 0.81928 1.90794 1.53803 1.57474 1.33715 1.86454 1.55634 1.51504 1.33741 1.23322 0.89945 0.88718 1.03798 1.19715 0.80112 0.80236 1.00317 1.93065 1.95553 1.34926 1.89133 1.93053 1.54109 1.81355 1.84689 0.93712 0.91172 0.93412 0.89819 0.93155 0.97691 0.95643 0.93051 0.92052 0.89666 0.87977 0.91524 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.36 9.26 37.16 0.34 -3.02 16 2 C 0.06 1.06 5.71 -3.83 -0.02 1.04 16 3 N -0.54 -11.47 4.69 -236.07 -1.11 -12.58 16 4 C 0.19 5.00 4.54 -4.97 -0.02 4.97 16 5 C -0.50 -14.14 8.39 -34.44 -0.29 -14.43 16 6 H 0.06 1.77 7.40 -52.49 -0.39 1.39 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.08 1.44 3.27 -3.82 -0.01 1.43 16 14 C -0.09 -1.30 5.67 -90.62 -0.51 -1.81 16 15 H 0.15 1.84 6.37 -51.93 -0.33 1.51 16 16 C -0.18 -2.12 6.28 -91.77 -0.58 -2.69 16 17 H 0.16 1.30 8.14 -51.93 -0.42 0.88 16 18 C 0.49 6.63 7.36 36.00 0.26 6.90 16 19 O -0.47 -7.88 12.86 -18.76 -0.24 -8.12 16 20 O -0.36 -4.12 10.57 -39.25 -0.41 -4.54 16 21 C 0.04 0.31 10.56 101.05 1.07 1.38 16 22 C 0.23 3.32 5.14 -26.73 -0.14 3.18 16 23 F -0.15 -2.45 16.01 2.25 0.04 -2.41 16 24 F -0.15 -2.07 17.60 2.25 0.04 -2.03 16 25 H 0.04 0.74 6.34 -51.93 -0.33 0.41 16 26 H 0.07 1.47 6.27 -51.93 -0.33 1.14 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.70 6.99 -51.93 -0.36 1.34 16 29 H 0.05 0.77 6.29 -51.93 -0.33 0.44 16 30 H 0.01 0.15 6.01 -51.93 -0.31 -0.16 16 31 H 0.03 0.73 7.90 -51.93 -0.41 0.32 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.06 1.17 4.84 -51.92 -0.25 0.92 16 34 H 0.09 1.77 6.26 -51.93 -0.33 1.44 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 37 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -31.75 311.18 -5.89 -37.64 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -4.61 Total: -1.59 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 0.00 Total: -1.59 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.37 Total: -38.78 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.66 Total: -12.66 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.08 Total: -4.44 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.75 -5.89 -37.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893922452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.951 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds