Wall clock time and date at job start Mon Mar 30 2020 01:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46892 * 109.47312 * 2 1 4 4 C 1.46900 * 111.00483 * 297.57585 * 3 2 1 5 5 C 1.50707 * 109.46590 * 292.66045 * 4 3 2 6 6 H 1.08000 * 120.00149 * 354.97387 * 5 4 3 7 7 C 1.37879 * 119.99518 * 174.97021 * 5 4 3 8 8 N 1.31514 * 120.00141 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99691 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47187 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47017 * 119.99780 * 9 7 5 12 12 H 1.48497 * 109.47567 * 239.99824 * 9 7 5 13 13 C 1.46903 * 111.00018 * 61.52798 * 3 2 1 14 14 C 1.53001 * 109.47154 * 66.04352 * 13 3 2 15 15 H 1.09002 * 115.54651 * 330.67154 * 14 13 3 16 16 C 1.53003 * 117.49899 * 185.00244 * 14 13 3 17 17 H 1.08996 * 117.49964 * 144.99758 * 16 14 13 18 18 C 1.50698 * 117.50043 * 0.02562 * 16 14 13 19 19 O 1.20834 * 119.99849 * 0.08726 * 18 16 14 20 20 O 1.34227 * 120.00232 * 180.08800 * 18 16 14 21 21 C 1.45205 * 116.99899 * 180.02562 * 20 18 16 22 22 C 1.52999 * 60.00008 * 252.48825 * 16 14 13 23 23 F 1.39898 * 117.50144 * 107.48713 * 22 16 14 24 24 F 1.39898 * 117.49657 * 252.51380 * 22 16 14 25 25 H 1.09000 * 109.47275 * 299.36827 * 1 2 3 26 26 H 1.09000 * 109.47385 * 59.36662 * 1 2 3 27 27 H 1.08996 * 109.47502 * 179.37060 * 1 2 3 28 28 H 1.09005 * 109.46632 * 239.99845 * 2 1 3 29 29 H 1.08997 * 109.46854 * 120.00623 * 2 1 3 30 30 H 1.09001 * 109.47394 * 52.65338 * 4 3 2 31 31 H 1.08996 * 109.47267 * 172.66104 * 4 3 2 32 32 H 0.96997 * 119.99754 * 179.97438 * 8 7 5 33 33 H 1.09008 * 109.46808 * 306.04590 * 13 3 2 34 34 H 1.08993 * 109.47340 * 186.04726 * 13 3 2 35 35 H 1.09001 * 109.46551 * 179.97438 * 21 20 18 36 36 H 1.09002 * 109.46772 * 299.99699 * 21 20 18 37 37 H 1.09001 * 109.46974 * 59.99797 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5967 2.0930 -1.2156 5 6 2.2919 1.4960 -2.4121 6 1 3.0392 0.7284 -2.2752 7 6 1.9737 1.9299 -3.6816 8 7 1.0633 2.8642 -3.8483 9 14 2.8359 1.1906 -5.1647 10 1 3.8099 0.1656 -4.7109 11 1 1.8313 0.5575 -6.0565 12 1 3.5512 2.2603 -5.9057 13 6 1.5788 2.0992 1.2056 14 6 2.2416 1.4787 2.4371 15 1 2.4795 0.4179 2.3585 16 6 1.8193 2.0084 3.8090 17 1 1.7793 1.2961 4.6330 18 6 0.7819 3.1009 3.8439 19 8 0.3155 3.5243 2.8127 20 8 0.3759 3.6037 5.0203 21 6 -0.6264 4.6535 4.9780 22 6 3.1974 2.3593 3.2446 23 9 3.3988 3.6704 2.8002 24 9 4.3098 1.7412 3.8256 25 1 -0.3634 0.5040 0.8956 26 1 -0.3634 0.5236 -0.8842 27 1 -0.3634 -1.0275 -0.0113 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 0.5178 1.9953 -1.3362 31 1 1.8590 3.1476 -1.1317 32 1 0.8398 3.1697 -4.7414 33 1 0.4954 2.0215 1.2981 34 1 1.8626 3.1488 1.1302 35 1 -0.8648 4.9692 5.9936 36 1 -0.2395 5.5025 4.4144 37 1 -1.5273 4.2763 4.4941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893922452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:52 Heat of formation + Delta-G solvation = -158.619667 kcal Electronic energy + Delta-G solvation = -22527.031720 eV Core-core repulsion = 18748.305583 eV Total energy + Delta-G solvation = -3778.726136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.88677 -48.55842 -41.80781 -39.44634 -37.87356 -36.69355 -34.66714 -31.13487 -30.01081 -28.96818 -26.70252 -25.44899 -25.01515 -22.87251 -21.69758 -20.88355 -19.29638 -18.54620 -18.37121 -18.11723 -17.54902 -17.36331 -16.71471 -16.62899 -16.40376 -15.84233 -15.17180 -14.90051 -14.82098 -14.76969 -14.59930 -14.39156 -14.23532 -13.72254 -13.30062 -13.13134 -13.11960 -13.01573 -12.72985 -12.59284 -12.41189 -12.15026 -11.91672 -11.85443 -11.59319 -11.49160 -11.20608 -10.97144 -10.58932 -8.91807 -8.17686 -6.27842 0.60170 1.38375 1.41369 1.42416 1.56016 1.91076 2.01382 2.40902 2.71612 3.14885 3.26523 3.35715 3.54319 3.75423 4.13396 4.22104 4.26909 4.29621 4.33352 4.40053 4.47759 4.63085 4.68081 4.77915 4.89832 5.03311 5.04195 5.21759 5.23768 5.41198 5.52905 5.69581 6.08491 6.36539 6.51139 6.65275 6.89632 7.41749 8.93507 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.004766 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.392400 B = 5873.911179 C = 6229.132320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.055 3.945 3 N -0.544 5.544 4 C 0.207 3.793 5 C -0.516 4.516 6 H 0.066 0.934 7 C -0.001 4.001 8 N -0.938 5.938 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.087 3.913 14 C -0.099 4.099 15 H 0.176 0.824 16 C -0.142 4.142 17 H 0.209 0.791 18 C 0.485 3.515 19 O -0.513 6.513 20 O -0.351 6.351 21 C 0.028 3.972 22 C 0.220 3.780 23 F -0.169 7.169 24 F -0.146 7.146 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.097 0.903 30 H -0.020 1.020 31 H -0.015 1.015 32 H 0.263 0.737 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.140 0.860 36 H 0.057 0.943 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.251 -3.697 20.584 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.072 4.072 3 N -0.268 5.268 4 C 0.081 3.919 5 C -0.555 4.555 6 H 0.084 0.916 7 C -0.198 4.198 8 N -0.579 5.579 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.208 1.208 13 C -0.041 4.041 14 C -0.118 4.118 15 H 0.194 0.806 16 C -0.162 4.162 17 H 0.226 0.774 18 C 0.328 3.672 19 O -0.401 6.401 20 O -0.267 6.267 21 C -0.065 4.065 22 C 0.183 3.817 23 F -0.149 7.149 24 F -0.126 7.126 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.115 0.885 30 H -0.002 1.002 31 H 0.003 0.997 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.158 0.842 36 H 0.075 0.925 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.938 -3.413 20.172 20.480 hybrid contribution -0.652 0.709 -1.162 1.510 sum -1.591 -2.704 19.010 19.267 Atomic orbital electron populations 1.22278 0.98728 1.02339 1.00543 1.22140 0.92750 0.89796 1.02552 1.62243 1.59674 1.03193 1.01677 1.19361 0.93233 0.92065 0.87282 1.21489 1.21558 1.21430 0.90992 0.91621 1.25930 0.95952 0.95577 1.02346 1.70118 1.33690 1.30883 1.23181 0.85330 0.78424 0.78374 0.78465 1.18395 1.20398 1.20756 1.21579 0.97669 0.96747 0.88106 1.23919 0.95277 1.02353 0.90253 0.80644 1.23573 0.90159 0.99452 1.03049 0.77381 1.22539 0.81283 0.81514 0.81889 1.90802 1.55384 1.58732 1.35163 1.86453 1.55986 1.51840 1.32415 1.23628 0.89107 0.87653 1.06097 1.19872 0.81226 0.79334 1.01274 1.93022 1.95755 1.36545 1.89598 1.93065 1.53968 1.81063 1.84477 0.92645 0.95444 0.90362 0.91763 0.88528 1.00186 0.99655 0.92847 0.92706 0.92935 0.84209 0.92464 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.25 9.26 71.98 0.67 -5.58 16 2 C 0.06 1.99 5.71 86.31 0.49 2.48 16 3 N -0.54 -23.66 4.69 -900.79 -4.23 -27.88 16 4 C 0.21 11.43 4.54 85.56 0.39 11.82 16 5 C -0.52 -29.80 8.39 25.60 0.21 -29.58 16 6 H 0.07 3.69 7.40 -2.91 -0.02 3.66 16 7 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 8 N -0.94 -58.13 13.29 21.45 0.28 -57.85 16 9 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 C 0.09 3.27 3.27 86.30 0.28 3.56 16 14 C -0.10 -2.62 5.67 -10.79 -0.06 -2.68 16 15 H 0.18 3.63 6.37 -2.39 -0.02 3.61 16 16 C -0.14 -2.95 6.28 -11.54 -0.07 -3.03 16 17 H 0.21 2.23 8.14 -2.39 -0.02 2.21 16 18 C 0.49 12.50 7.36 71.24 0.52 13.03 16 19 O -0.51 -17.36 12.86 21.94 0.28 -17.08 16 20 O -0.35 -7.36 10.57 -51.39 -0.54 -7.90 16 21 C 0.03 0.45 10.56 113.37 1.20 1.65 16 22 C 0.22 5.88 5.14 30.59 0.16 6.03 16 23 F -0.17 -5.71 16.01 44.97 0.72 -4.99 16 24 F -0.15 -3.59 17.60 44.97 0.79 -2.80 16 25 H 0.05 1.78 6.34 -2.39 -0.02 1.77 16 26 H 0.03 1.17 6.27 -2.39 -0.01 1.15 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.06 2.57 6.99 -2.38 -0.02 2.55 16 29 H 0.10 2.60 6.29 -2.39 -0.02 2.58 16 30 H -0.02 -1.16 6.01 -2.39 -0.01 -1.17 16 31 H -0.01 -0.91 7.90 -2.39 -0.02 -0.93 16 32 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.06 2.14 4.84 -2.38 -0.01 2.12 16 34 H 0.05 2.31 6.26 -2.39 -0.01 2.29 16 35 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 37 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 Total: -1.00 -72.99 311.18 4.68 -68.31 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.09 Total: 4.94 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 4.25 Total: -1.87 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -3.94 Total: -85.73 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.26 Total: -24.98 kcal Atomic # 9 Polarization: -9.30 SS G_CDS: 1.51 Total: -7.79 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.99 4.68 -68.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893922452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.311 kcal (2) G-P(sol) polarization free energy of solvation -72.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds