Wall clock time and date at job start Mon Mar 30 2020 01:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99936 * 2 1 4 4 O 1.20822 * 120.00100 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00206 * 180.02562 * 3 2 1 6 6 H 1.09007 * 115.54688 * 325.67175 * 5 3 2 7 7 C 1.52998 * 117.50041 * 179.97438 * 5 3 2 8 8 H 1.09003 * 117.49548 * 144.97495 * 7 5 3 9 9 C 1.52996 * 117.49736 * 359.97438 * 7 5 3 10 10 N 1.46909 * 109.47059 * 174.99790 * 9 7 5 11 11 C 1.46904 * 110.99728 * 293.95334 * 10 9 7 12 12 C 1.46897 * 110.99926 * 170.00030 * 10 9 7 13 13 H 1.09004 * 109.46869 * 309.99547 * 12 10 9 14 14 C 1.52989 * 109.47413 * 69.99724 * 12 10 9 15 15 C 1.50703 * 109.46977 * 190.00089 * 12 10 9 16 16 H 1.08000 * 119.99796 * 354.49291 * 15 12 10 17 17 C 1.37871 * 119.99831 * 174.49368 * 15 12 10 18 18 N 1.31520 * 119.99777 * 162.79542 * 17 15 12 19 19 Si 1.86797 * 120.00267 * 342.79367 * 17 15 12 20 20 H 1.48501 * 109.47180 * 269.99766 * 19 17 15 21 21 H 1.48504 * 109.47231 * 150.00239 * 19 17 15 22 22 H 1.48498 * 109.47306 * 30.00084 * 19 17 15 23 23 C 1.52997 * 59.99984 * 252.48712 * 7 5 3 24 24 F 1.39896 * 117.49979 * 107.49447 * 23 7 5 25 25 F 1.39901 * 117.50002 * 252.50915 * 23 7 5 26 26 H 1.08998 * 109.46571 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46844 * 299.99719 * 1 2 3 28 28 H 1.08998 * 109.47483 * 59.99576 * 1 2 3 29 29 H 1.08998 * 109.47567 * 54.99540 * 9 7 5 30 30 H 1.09000 * 109.46673 * 294.99134 * 9 7 5 31 31 H 1.09004 * 109.46643 * 296.04697 * 11 10 9 32 32 H 1.08997 * 109.47120 * 56.04309 * 11 10 9 33 33 H 1.08997 * 109.47054 * 176.04692 * 11 10 9 34 34 H 1.08999 * 109.47252 * 305.32228 * 14 12 10 35 35 H 1.09005 * 109.47564 * 65.32156 * 14 12 10 36 36 H 1.09003 * 109.47232 * 185.32004 * 14 12 10 37 37 H 0.97003 * 120.00096 * 355.58285 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0785 0.4884 0.5537 7 6 4.2007 2.6672 -0.0012 8 1 5.1301 2.7970 0.5534 9 6 3.2587 3.8728 -0.0017 10 7 4.0444 5.1082 0.1186 11 6 4.7087 5.1844 1.4266 12 6 3.2049 6.2908 -0.1152 13 1 2.6424 6.1601 -1.0397 14 6 2.2326 6.4651 1.0531 15 6 4.0792 7.5132 -0.2278 16 1 5.1411 7.4360 -0.0470 17 6 3.5233 8.7299 -0.5616 18 7 4.1895 9.8412 -0.3362 19 14 1.8239 8.8000 -1.3339 20 1 1.9488 8.7321 -2.8121 21 1 1.1584 10.0713 -0.9514 22 1 1.0135 7.6526 -0.8524 23 6 4.2459 1.8054 -1.2645 24 9 3.4227 2.1802 -2.3318 25 9 5.4771 1.2443 -1.6201 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.5704 3.7965 0.8400 30 1 2.6929 3.8912 -0.9332 31 1 3.9564 5.2400 2.2134 32 1 5.3236 4.2966 1.5740 33 1 5.3389 6.0730 1.4629 34 1 1.6655 5.5450 1.1941 35 1 2.7921 6.6898 1.9612 36 1 1.5474 7.2847 0.8364 37 1 5.0436 9.8101 0.1228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894001208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:07 Heat of formation + Delta-G solvation = -131.599299 kcal Electronic energy + Delta-G solvation = -22699.041400 eV Core-core repulsion = 18921.486954 eV Total energy + Delta-G solvation = -3777.554445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.81872 -47.48383 -40.82513 -38.15453 -36.78722 -35.64301 -32.59620 -29.79037 -28.48115 -27.10481 -25.07553 -24.68835 -23.67653 -21.35583 -20.45283 -19.27913 -18.23649 -17.54121 -17.31352 -17.12706 -16.47126 -16.38784 -15.55759 -15.22649 -14.31447 -14.14120 -13.95178 -13.68406 -13.62099 -13.58961 -13.36526 -13.22039 -12.84882 -12.37473 -11.98374 -11.90903 -11.63320 -11.42940 -11.18001 -11.10616 -10.97076 -10.65202 -10.50642 -10.33183 -9.96778 -9.84707 -9.55039 -8.85261 -8.17951 -7.32375 -6.39357 -3.98260 1.59777 2.24181 2.91899 3.00513 3.45969 3.48505 3.62428 3.75724 4.21978 4.39134 4.54293 4.55500 4.85123 4.94363 5.01445 5.18899 5.25773 5.29783 5.33103 5.49418 5.92027 5.99079 6.05305 6.25573 6.31914 6.42306 6.47497 6.67650 6.72684 6.99698 7.27538 7.45844 7.75903 8.04153 8.34024 8.49485 9.02902 9.67775 11.00079 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.005389 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.618721 B = 5194.916284 C = 5705.208915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.489 3.511 4 O -0.475 6.475 5 C -0.178 4.178 6 H 0.160 0.840 7 C -0.093 4.093 8 H 0.149 0.851 9 C 0.078 3.922 10 N -0.527 5.527 11 C 0.031 3.969 12 C 0.189 3.811 13 H 0.033 0.967 14 C -0.180 4.180 15 C -0.584 4.584 16 H 0.064 0.936 17 C 0.032 3.968 18 N -0.909 5.909 19 Si 1.039 2.961 20 H -0.286 1.286 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.235 3.765 24 F -0.147 7.147 25 F -0.151 7.151 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.020 0.980 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.024 0.976 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 -21.125 2.606 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.331 3.669 4 O -0.360 6.360 5 C -0.198 4.198 6 H 0.177 0.823 7 C -0.113 4.113 8 H 0.167 0.833 9 C -0.050 4.050 10 N -0.251 5.251 11 C -0.118 4.118 12 C 0.082 3.918 13 H 0.051 0.949 14 C -0.240 4.240 15 C -0.622 4.622 16 H 0.082 0.918 17 C -0.173 4.173 18 N -0.543 5.543 19 Si 0.867 3.133 20 H -0.212 1.212 21 H -0.213 1.213 22 H -0.198 1.198 23 C 0.198 3.802 24 F -0.127 7.127 25 F -0.131 7.131 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.193 -19.779 1.542 20.507 hybrid contribution 0.420 -1.240 1.079 1.697 sum -4.773 -21.018 2.621 21.712 Atomic orbital electron populations 1.23326 0.75629 1.03823 1.03000 1.86459 1.23849 1.32839 1.84093 1.22136 0.89561 0.81790 0.73448 1.90774 1.66407 1.35651 1.43203 1.23446 0.90710 1.03364 1.02295 0.82289 1.24034 1.02432 0.90429 0.94363 0.83312 1.21820 0.92512 0.87498 1.03208 1.62276 1.31468 1.01440 1.29902 1.22320 0.98257 1.01234 0.89961 1.19667 0.90906 0.88311 0.92929 0.94918 1.22805 1.00092 0.99213 1.01843 1.21930 0.95568 0.92215 1.52475 0.91787 1.25628 1.04433 0.91832 0.95363 1.70817 1.15968 1.28338 1.39183 0.84175 0.76305 0.75783 0.77017 1.21234 1.21342 1.19834 1.19693 0.78736 1.01290 0.80522 1.93062 1.70581 1.91239 1.57801 1.93060 1.41304 1.85567 1.93155 0.87915 0.91598 0.91527 0.92355 0.89586 0.96139 0.93790 0.90559 0.95693 0.93209 0.92900 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.92 10.57 -39.26 -0.41 -4.33 16 3 C 0.49 6.35 7.36 36.01 0.26 6.61 16 4 O -0.48 -7.52 12.86 -18.75 -0.24 -7.77 16 5 C -0.18 -2.03 6.28 -91.77 -0.58 -2.60 16 6 H 0.16 1.24 8.14 -51.92 -0.42 0.82 16 7 C -0.09 -1.29 5.66 -90.62 -0.51 -1.80 16 8 H 0.15 1.81 6.36 -51.93 -0.33 1.48 16 9 C 0.08 1.39 3.06 -3.82 -0.01 1.38 16 10 N -0.53 -11.07 4.70 -236.28 -1.11 -12.18 16 11 C 0.03 0.57 8.64 60.07 0.52 1.09 16 12 C 0.19 4.60 1.85 -68.87 -0.13 4.47 16 13 H 0.03 0.83 6.49 -51.93 -0.34 0.50 16 14 C -0.18 -4.06 7.81 37.15 0.29 -3.77 16 15 C -0.58 -16.37 8.34 -34.44 -0.29 -16.66 16 16 H 0.06 1.93 7.14 -52.49 -0.37 1.56 16 17 C 0.03 0.93 5.35 -17.82 -0.10 0.84 16 18 N -0.91 -27.97 13.70 55.43 0.76 -27.21 16 19 Si 1.04 25.59 26.35 -169.99 -4.48 21.11 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.27 -6.24 5.45 56.52 0.31 -5.93 16 23 C 0.23 3.24 5.13 -26.73 -0.14 3.11 16 24 F -0.15 -2.37 16.01 2.25 0.04 -2.33 16 25 F -0.15 -2.02 17.60 2.25 0.04 -1.98 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.06 1.06 5.72 -51.93 -0.30 0.77 16 30 H 0.09 1.69 6.27 -51.93 -0.33 1.36 16 31 H 0.02 0.37 6.33 -51.93 -0.33 0.04 16 32 H 0.04 0.66 6.22 -51.93 -0.32 0.34 16 33 H 0.08 1.59 6.75 -51.93 -0.35 1.24 16 34 H 0.02 0.51 6.70 -51.93 -0.35 0.16 16 35 H 0.05 1.11 6.66 -51.93 -0.35 0.76 16 36 H 0.05 1.21 5.05 -51.93 -0.26 0.95 16 37 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -32.02 302.47 -5.02 -37.04 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -4.56 Total: -0.92 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 0.39 Total: -5.99 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.35 Total: -39.39 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.66 Total: -12.10 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.08 Total: -4.31 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -4.48 Total: 21.11 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.02 -5.02 -37.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894001208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.558 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds