Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99936 * 2 1 4 4 O 1.20822 * 120.00100 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00206 * 180.02562 * 3 2 1 6 6 H 1.09007 * 115.54688 * 325.67175 * 5 3 2 7 7 C 1.52998 * 117.50041 * 179.97438 * 5 3 2 8 8 H 1.09003 * 117.49548 * 144.97495 * 7 5 3 9 9 C 1.52996 * 117.49736 * 359.97438 * 7 5 3 10 10 N 1.46909 * 109.47059 * 174.99790 * 9 7 5 11 11 C 1.46904 * 110.99728 * 293.95334 * 10 9 7 12 12 C 1.46897 * 110.99926 * 170.00030 * 10 9 7 13 13 H 1.09004 * 109.46869 * 309.99547 * 12 10 9 14 14 C 1.52989 * 109.47413 * 69.99724 * 12 10 9 15 15 C 1.50703 * 109.46977 * 190.00089 * 12 10 9 16 16 H 1.08000 * 119.99796 * 354.49291 * 15 12 10 17 17 C 1.37871 * 119.99831 * 174.49368 * 15 12 10 18 18 N 1.31520 * 119.99777 * 162.79542 * 17 15 12 19 19 Si 1.86797 * 120.00267 * 342.79367 * 17 15 12 20 20 H 1.48501 * 109.47180 * 269.99766 * 19 17 15 21 21 H 1.48504 * 109.47231 * 150.00239 * 19 17 15 22 22 H 1.48498 * 109.47306 * 30.00084 * 19 17 15 23 23 C 1.52997 * 59.99984 * 252.48712 * 7 5 3 24 24 F 1.39896 * 117.49979 * 107.49447 * 23 7 5 25 25 F 1.39901 * 117.50002 * 252.50915 * 23 7 5 26 26 H 1.08998 * 109.46571 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46844 * 299.99719 * 1 2 3 28 28 H 1.08998 * 109.47483 * 59.99576 * 1 2 3 29 29 H 1.08998 * 109.47567 * 54.99540 * 9 7 5 30 30 H 1.09000 * 109.46673 * 294.99134 * 9 7 5 31 31 H 1.09004 * 109.46643 * 296.04697 * 11 10 9 32 32 H 1.08997 * 109.47120 * 56.04309 * 11 10 9 33 33 H 1.08997 * 109.47054 * 176.04692 * 11 10 9 34 34 H 1.08999 * 109.47252 * 305.32228 * 14 12 10 35 35 H 1.09005 * 109.47564 * 65.32156 * 14 12 10 36 36 H 1.09003 * 109.47232 * 185.32004 * 14 12 10 37 37 H 0.97003 * 120.00096 * 355.58285 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 4.0785 0.4884 0.5537 7 6 4.2007 2.6672 -0.0012 8 1 5.1301 2.7970 0.5534 9 6 3.2587 3.8728 -0.0017 10 7 4.0444 5.1082 0.1186 11 6 4.7087 5.1844 1.4266 12 6 3.2049 6.2908 -0.1152 13 1 2.6424 6.1601 -1.0397 14 6 2.2326 6.4651 1.0531 15 6 4.0792 7.5132 -0.2278 16 1 5.1411 7.4360 -0.0470 17 6 3.5233 8.7299 -0.5616 18 7 4.1895 9.8412 -0.3362 19 14 1.8239 8.8000 -1.3339 20 1 1.9488 8.7321 -2.8121 21 1 1.1584 10.0713 -0.9514 22 1 1.0135 7.6526 -0.8524 23 6 4.2459 1.8054 -1.2645 24 9 3.4227 2.1802 -2.3318 25 9 5.4771 1.2443 -1.6201 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.5704 3.7965 0.8400 30 1 2.6929 3.8912 -0.9332 31 1 3.9564 5.2400 2.2134 32 1 5.3236 4.2966 1.5740 33 1 5.3389 6.0730 1.4629 34 1 1.6655 5.5450 1.1941 35 1 2.7921 6.6898 1.9612 36 1 1.5474 7.2847 0.8364 37 1 5.0436 9.8101 0.1228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894001208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = -153.708417 kcal Electronic energy + Delta-G solvation = -22700.000123 eV Core-core repulsion = 18921.486954 eV Total energy + Delta-G solvation = -3778.513169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.90634 -48.57934 -41.80762 -39.52323 -37.99107 -36.81720 -34.69636 -31.60145 -29.38529 -28.42026 -26.96862 -25.94594 -25.10224 -22.53857 -21.52957 -21.04313 -19.42143 -19.31735 -18.55051 -18.18781 -17.57197 -17.38643 -16.84795 -16.51243 -15.86219 -15.62052 -15.22727 -15.11457 -14.86410 -14.77686 -14.57927 -14.41192 -14.21855 -13.89848 -13.46235 -13.30413 -13.17002 -13.01865 -12.65965 -12.48848 -12.43192 -11.95722 -11.84774 -11.83600 -11.60272 -11.42827 -11.03117 -10.99142 -10.39959 -8.97792 -8.68943 -6.28835 0.59069 1.37495 1.46882 1.50969 1.68996 1.88968 1.99488 2.49766 2.65937 3.09383 3.24211 3.33632 3.48297 3.73062 4.09513 4.23347 4.27141 4.31152 4.38044 4.41917 4.50619 4.59197 4.68777 4.69590 4.75107 4.86505 4.91641 5.08606 5.21687 5.23292 5.45968 5.83449 6.09812 6.27743 6.48767 6.57633 6.74696 7.45533 8.68672 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.005389 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.618721 B = 5194.916284 C = 5705.208915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.487 3.513 4 O -0.509 6.509 5 C -0.142 4.142 6 H 0.206 0.794 7 C -0.104 4.104 8 H 0.171 0.829 9 C 0.087 3.913 10 N -0.545 5.545 11 C 0.035 3.965 12 C 0.189 3.811 13 H 0.024 0.976 14 C -0.171 4.171 15 C -0.579 4.579 16 H 0.029 0.971 17 C -0.017 4.017 18 N -0.941 5.941 19 Si 1.077 2.923 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.246 1.246 23 C 0.220 3.780 24 F -0.166 7.166 25 F -0.148 7.148 26 H 0.138 0.862 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.025 0.975 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 -24.038 3.250 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.330 3.670 4 O -0.397 6.397 5 C -0.162 4.162 6 H 0.223 0.777 7 C -0.123 4.123 8 H 0.188 0.812 9 C -0.041 4.041 10 N -0.268 5.268 11 C -0.113 4.113 12 C 0.080 3.920 13 H 0.041 0.959 14 C -0.230 4.230 15 C -0.618 4.618 16 H 0.047 0.953 17 C -0.216 4.216 18 N -0.577 5.577 19 Si 0.899 3.101 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.170 1.170 23 C 0.183 3.817 24 F -0.147 7.147 25 F -0.128 7.128 26 H 0.156 0.844 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.203 -22.743 2.195 23.676 hybrid contribution 0.787 -0.433 0.882 1.259 sum -5.416 -23.176 3.077 23.999 Atomic orbital electron populations 1.23632 0.74038 1.06081 1.02725 1.86458 1.25387 1.31583 1.83384 1.22435 0.90165 0.81856 0.72578 1.90767 1.67259 1.36863 1.44835 1.23553 0.90042 1.02616 0.99950 0.77710 1.23937 1.02868 0.90155 0.95305 0.81211 1.21645 0.92938 0.87446 1.02027 1.62128 1.31656 1.01601 1.31434 1.22296 0.98250 1.01793 0.88984 1.19479 0.90799 0.88343 0.93342 0.95856 1.22636 0.99594 1.00044 1.00766 1.22083 0.94470 0.94092 1.51116 0.95278 1.26922 1.07523 0.91630 0.95489 1.70935 1.16040 1.29485 1.41254 0.83700 0.72799 0.76849 0.76762 1.20349 1.21075 1.16968 1.19879 0.79136 1.02351 0.80381 1.93022 1.71175 1.91606 1.58850 1.93065 1.41152 1.85444 1.93161 0.84431 0.91515 0.92228 0.92401 0.91773 0.95633 0.89616 0.93731 0.93510 0.93453 0.93456 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.35 -6.67 10.57 -51.43 -0.54 -7.21 16 3 C 0.49 11.33 7.36 71.24 0.52 11.85 16 4 O -0.51 -15.28 12.86 21.98 0.28 -15.00 16 5 C -0.14 -2.72 6.28 -11.54 -0.07 -2.79 16 6 H 0.21 2.03 8.14 -2.38 -0.02 2.01 16 7 C -0.10 -2.58 5.66 -10.80 -0.06 -2.64 16 8 H 0.17 3.48 6.36 -2.39 -0.02 3.46 16 9 C 0.09 2.98 3.06 86.30 0.26 3.24 16 10 N -0.54 -22.45 4.70 -901.46 -4.24 -26.69 16 11 C 0.03 1.25 8.64 127.69 1.10 2.36 16 12 C 0.19 9.12 1.85 44.17 0.08 9.20 16 13 H 0.02 1.18 6.49 -2.38 -0.02 1.16 16 14 C -0.17 -7.51 7.81 71.98 0.56 -6.95 16 15 C -0.58 -33.26 8.34 25.60 0.21 -33.05 16 16 H 0.03 1.83 7.14 -2.91 -0.02 1.81 16 17 C -0.02 -1.03 5.35 84.65 0.45 -0.58 16 18 N -0.94 -59.61 13.70 21.45 0.29 -59.32 16 19 Si 1.08 51.57 26.35 68.60 1.81 53.38 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 22 H -0.25 -10.60 5.45 99.48 0.54 -10.06 16 23 C 0.22 5.57 5.13 30.59 0.16 5.72 16 24 F -0.17 -5.22 16.01 44.97 0.72 -4.50 16 25 F -0.15 -3.59 17.60 44.97 0.79 -2.80 16 26 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.92 8.13 -2.39 -0.02 0.91 16 28 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 29 H 0.06 1.99 5.72 -2.39 -0.01 1.98 16 30 H 0.06 2.48 6.27 -2.39 -0.01 2.46 16 31 H 0.03 0.89 6.33 -2.38 -0.02 0.87 16 32 H 0.09 2.34 6.22 -2.39 -0.01 2.33 16 33 H 0.04 1.88 6.75 -2.39 -0.02 1.86 16 34 H 0.05 1.83 6.70 -2.39 -0.02 1.81 16 35 H 0.05 2.06 6.66 -2.38 -0.02 2.05 16 36 H 0.05 2.10 5.05 -2.39 -0.01 2.08 16 37 H 0.25 16.23 8.73 -92.71 -0.81 15.43 16 Total: -1.00 -71.61 302.47 4.43 -67.18 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 0.90 Total: 7.02 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.42 Total: -12.04 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -3.95 Total: -86.01 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.26 Total: -22.21 kcal Atomic # 9 Polarization: -8.82 SS G_CDS: 1.51 Total: -7.31 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 1.81 Total: 53.38 kcal Total: -71.61 4.43 -67.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894001208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.531 kcal (2) G-P(sol) polarization free energy of solvation -71.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds