Wall clock time and date at job start Mon Mar 30 2020 01:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99858 * 2 1 4 4 O 1.20829 * 119.99994 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00086 * 179.97438 * 3 2 1 6 6 H 1.08999 * 115.55421 * 325.68824 * 5 3 2 7 7 C 1.52999 * 117.49868 * 179.97438 * 5 3 2 8 8 H 1.08997 * 117.52122 * 359.97438 * 7 5 3 9 9 C 1.53004 * 117.49517 * 145.02158 * 7 5 3 10 10 N 1.46898 * 109.46619 * 185.01295 * 9 7 5 11 11 C 1.46901 * 111.00443 * 66.04574 * 10 9 7 12 12 C 1.46906 * 110.99820 * 189.99887 * 10 9 7 13 13 H 1.08996 * 109.46703 * 300.00076 * 12 10 9 14 14 C 1.53000 * 109.47036 * 60.00102 * 12 10 9 15 15 C 1.50700 * 109.46975 * 179.97438 * 12 10 9 16 16 H 1.07997 * 120.00610 * 0.02562 * 15 12 10 17 17 C 1.37882 * 119.99794 * 179.97438 * 15 12 10 18 18 N 1.31518 * 119.99681 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00089 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46899 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46875 * 120.00070 * 19 17 15 22 22 H 1.48501 * 109.47380 * 240.00181 * 19 17 15 23 23 C 1.52994 * 117.50118 * 111.37397 * 5 3 2 24 24 F 1.39901 * 117.49821 * 0.02562 * 23 5 3 25 25 F 1.39899 * 117.51909 * 214.97416 * 23 5 3 26 26 H 1.08997 * 109.47344 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47844 * 300.00684 * 1 2 3 28 28 H 1.09003 * 109.47089 * 60.00027 * 1 2 3 29 29 H 1.08994 * 109.47270 * 65.01160 * 9 7 5 30 30 H 1.08999 * 109.47017 * 305.01038 * 9 7 5 31 31 H 1.09002 * 109.47401 * 183.95136 * 11 10 9 32 32 H 1.09001 * 109.46874 * 63.95149 * 11 10 9 33 33 H 1.09004 * 109.46970 * 303.95282 * 11 10 9 34 34 H 1.08998 * 109.47248 * 180.02562 * 14 12 10 35 35 H 1.09006 * 109.46931 * 299.99788 * 14 12 10 36 36 H 1.08992 * 109.47626 * 59.99948 * 14 12 10 37 37 H 0.97003 * 119.99283 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0782 0.4886 0.5553 7 6 4.2007 2.6672 -0.0001 8 1 3.5299 3.5263 -0.0013 9 6 5.5052 2.8494 0.7784 10 7 5.8921 4.2664 0.7606 11 6 4.9248 5.0857 1.5029 12 6 7.2508 4.4479 1.2891 13 1 7.2919 4.0872 2.3168 14 6 8.2413 3.6580 0.4313 15 6 7.6120 5.9105 1.2546 16 1 6.9032 6.6331 0.8782 17 6 8.8472 6.3263 1.7046 18 7 9.7102 5.4464 2.1634 19 14 9.2953 8.1392 1.6611 20 1 8.1595 8.9166 1.1038 21 1 9.5880 8.6099 3.0388 22 1 10.4945 8.3325 0.8068 23 6 4.2464 1.8056 -1.2630 24 9 3.4236 2.1810 -2.3304 25 9 5.4779 1.2449 -1.6183 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 6.2909 2.2524 0.3156 30 1 5.3616 2.5249 1.8090 31 1 5.1965 6.1377 1.4150 32 1 4.9329 4.7950 2.5534 33 1 3.9272 4.9324 1.0912 34 1 9.2493 3.7922 0.8236 35 1 7.9802 2.6000 0.4559 36 1 8.2001 4.0186 -0.5964 37 1 10.5793 5.7389 2.4797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894001211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:11 Heat of formation + Delta-G solvation = -137.762065 kcal Electronic energy + Delta-G solvation = -22207.275049 eV Core-core repulsion = 18429.453366 eV Total energy + Delta-G solvation = -3777.821683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.74623 -47.40906 -40.76647 -37.98018 -36.79152 -35.51586 -32.70500 -29.37286 -28.63117 -27.45617 -24.99696 -24.34772 -23.55277 -21.28690 -20.50290 -19.55054 -18.38082 -17.42162 -17.33075 -16.53944 -16.35634 -16.22919 -15.57036 -14.96020 -14.31095 -14.17544 -13.98910 -13.82456 -13.60822 -13.51954 -13.50410 -12.97408 -12.57588 -12.40233 -12.15589 -11.86699 -11.25057 -11.16636 -11.10117 -11.01861 -10.91925 -10.62232 -10.57614 -10.14796 -10.07562 -9.96436 -9.85684 -8.89990 -8.44805 -7.29077 -6.03721 -4.08082 1.59467 2.21636 2.96556 3.08864 3.29226 3.37342 3.41744 3.91875 4.20189 4.41210 4.46071 4.62120 4.81406 4.90102 5.07927 5.19341 5.26966 5.30614 5.39935 5.57084 5.88272 6.01639 6.11186 6.21395 6.35241 6.74553 6.81114 7.02547 7.09734 7.41340 7.45778 7.65316 7.80422 8.13165 8.26689 8.52348 8.98026 9.57111 11.03264 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.032219 B = 0.004043 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.843662 B = 6923.417999 C = 7230.261213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.496 3.504 4 O -0.488 6.488 5 C -0.180 4.180 6 H 0.160 0.840 7 C -0.091 4.091 8 H 0.148 0.852 9 C 0.070 3.930 10 N -0.534 5.534 11 C 0.032 3.968 12 C 0.213 3.787 13 H 0.001 0.999 14 C -0.135 4.135 15 C -0.504 4.504 16 H 0.065 0.935 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.237 3.763 24 F -0.154 7.154 25 F -0.143 7.143 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.015 0.985 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.009 0.991 36 H 0.036 0.964 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.212 -11.321 -3.125 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.337 3.663 4 O -0.374 6.374 5 C -0.200 4.200 6 H 0.178 0.822 7 C -0.110 4.110 8 H 0.166 0.834 9 C -0.058 4.058 10 N -0.259 5.259 11 C -0.116 4.116 12 C 0.107 3.893 13 H 0.019 0.981 14 C -0.193 4.193 15 C -0.542 4.542 16 H 0.083 0.917 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.210 1.210 23 C 0.200 3.800 24 F -0.134 7.134 25 F -0.124 7.124 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.028 0.972 36 H 0.055 0.945 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.239 -10.867 -3.583 18.266 hybrid contribution 0.113 0.498 0.620 0.803 sum -14.125 -10.369 -2.963 17.772 Atomic orbital electron populations 1.23335 0.75688 1.03929 1.02872 1.86477 1.23803 1.32640 1.83953 1.22108 0.89630 0.81700 0.72820 1.90705 1.66380 1.36259 1.44083 1.23461 0.90242 1.03928 1.02400 0.82211 1.24031 1.00697 0.92989 0.93316 0.83404 1.21771 0.92547 0.94211 0.97300 1.62114 1.04927 1.03076 1.55789 1.22310 0.94347 1.00200 0.94752 1.19285 0.81490 0.96452 0.92047 0.98140 1.21879 1.03127 0.94678 0.99625 1.21178 1.00189 0.91659 1.41197 0.91671 1.24932 0.96312 0.97769 0.95229 1.69901 1.07363 1.33197 1.42768 0.86451 0.78467 0.85048 0.77511 1.19708 1.21171 1.21011 1.19744 0.78700 1.01303 0.80269 1.93057 1.70770 1.91357 1.58226 1.93066 1.40987 1.85383 1.92928 0.87813 0.91591 0.91633 0.88803 0.93771 0.90210 0.96684 0.93634 0.89509 0.97224 0.94470 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.88 10.57 -39.26 -0.41 -4.29 16 3 C 0.50 6.42 7.37 36.01 0.27 6.68 16 4 O -0.49 -7.45 16.01 -18.75 -0.30 -7.75 16 5 C -0.18 -2.21 6.01 -91.77 -0.55 -2.77 16 6 H 0.16 1.54 8.14 -51.93 -0.42 1.12 16 7 C -0.09 -1.34 5.17 -90.64 -0.47 -1.81 16 8 H 0.15 2.29 5.89 -51.93 -0.31 1.99 16 9 C 0.07 1.19 5.04 -3.82 -0.02 1.17 16 10 N -0.53 -11.10 4.62 -236.28 -1.09 -12.19 16 11 C 0.03 0.61 9.07 60.07 0.54 1.16 16 12 C 0.21 5.22 2.06 -68.86 -0.14 5.08 16 13 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 14 C -0.14 -3.23 8.76 37.16 0.33 -2.90 16 15 C -0.50 -13.51 7.93 -34.44 -0.27 -13.78 16 16 H 0.07 1.75 6.40 -52.49 -0.34 1.41 16 17 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 18 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 19 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.24 3.44 5.13 -26.76 -0.14 3.30 16 24 F -0.15 -2.39 17.13 2.25 0.04 -2.35 16 25 F -0.14 -2.18 16.47 2.25 0.04 -2.14 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.09 1.63 4.74 -51.93 -0.25 1.38 16 30 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 31 H 0.08 1.63 6.24 -51.93 -0.32 1.30 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.04 0.75 6.22 -51.93 -0.32 0.43 16 34 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 35 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -29.78 314.54 -5.55 -35.33 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.69 Total: -1.98 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 0.52 Total: -1.03 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.46 Total: -36.61 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.71 Total: -12.05 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.08 Total: -4.49 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.78 -5.55 -35.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894001211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.428 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds