Wall clock time and date at job start Mon Mar 30 2020 01:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99858 * 2 1 4 4 O 1.20829 * 119.99994 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00086 * 179.97438 * 3 2 1 6 6 H 1.08999 * 115.55421 * 325.68824 * 5 3 2 7 7 C 1.52999 * 117.49868 * 179.97438 * 5 3 2 8 8 H 1.08997 * 117.52122 * 359.97438 * 7 5 3 9 9 C 1.53004 * 117.49517 * 145.02158 * 7 5 3 10 10 N 1.46898 * 109.46619 * 185.01295 * 9 7 5 11 11 C 1.46901 * 111.00443 * 66.04574 * 10 9 7 12 12 C 1.46906 * 110.99820 * 189.99887 * 10 9 7 13 13 H 1.08996 * 109.46703 * 300.00076 * 12 10 9 14 14 C 1.53000 * 109.47036 * 60.00102 * 12 10 9 15 15 C 1.50700 * 109.46975 * 179.97438 * 12 10 9 16 16 H 1.07997 * 120.00610 * 0.02562 * 15 12 10 17 17 C 1.37882 * 119.99794 * 179.97438 * 15 12 10 18 18 N 1.31518 * 119.99681 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00089 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46899 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46875 * 120.00070 * 19 17 15 22 22 H 1.48501 * 109.47380 * 240.00181 * 19 17 15 23 23 C 1.52994 * 117.50118 * 111.37397 * 5 3 2 24 24 F 1.39901 * 117.49821 * 0.02562 * 23 5 3 25 25 F 1.39899 * 117.51909 * 214.97416 * 23 5 3 26 26 H 1.08997 * 109.47344 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47844 * 300.00684 * 1 2 3 28 28 H 1.09003 * 109.47089 * 60.00027 * 1 2 3 29 29 H 1.08994 * 109.47270 * 65.01160 * 9 7 5 30 30 H 1.08999 * 109.47017 * 305.01038 * 9 7 5 31 31 H 1.09002 * 109.47401 * 183.95136 * 11 10 9 32 32 H 1.09001 * 109.46874 * 63.95149 * 11 10 9 33 33 H 1.09004 * 109.46970 * 303.95282 * 11 10 9 34 34 H 1.08998 * 109.47248 * 180.02562 * 14 12 10 35 35 H 1.09006 * 109.46931 * 299.99788 * 14 12 10 36 36 H 1.08992 * 109.47626 * 59.99948 * 14 12 10 37 37 H 0.97003 * 119.99283 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0782 0.4886 0.5553 7 6 4.2007 2.6672 -0.0001 8 1 3.5299 3.5263 -0.0013 9 6 5.5052 2.8494 0.7784 10 7 5.8921 4.2664 0.7606 11 6 4.9248 5.0857 1.5029 12 6 7.2508 4.4479 1.2891 13 1 7.2919 4.0872 2.3168 14 6 8.2413 3.6580 0.4313 15 6 7.6120 5.9105 1.2546 16 1 6.9032 6.6331 0.8782 17 6 8.8472 6.3263 1.7046 18 7 9.7102 5.4464 2.1634 19 14 9.2953 8.1392 1.6611 20 1 8.1595 8.9166 1.1038 21 1 9.5880 8.6099 3.0388 22 1 10.4945 8.3325 0.8068 23 6 4.2464 1.8056 -1.2630 24 9 3.4236 2.1810 -2.3304 25 9 5.4779 1.2449 -1.6183 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 6.2909 2.2524 0.3156 30 1 5.3616 2.5249 1.8090 31 1 5.1965 6.1377 1.4150 32 1 4.9329 4.7950 2.5534 33 1 3.9272 4.9324 1.0912 34 1 9.2493 3.7922 0.8236 35 1 7.9802 2.6000 0.4559 36 1 8.2001 4.0186 -0.5964 37 1 10.5793 5.7389 2.4797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894001211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:11 Heat of formation + Delta-G solvation = -155.778471 kcal Electronic energy + Delta-G solvation = -22208.056299 eV Core-core repulsion = 18429.453366 eV Total energy + Delta-G solvation = -3778.602933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.90800 -48.57891 -41.74544 -39.35044 -37.92649 -36.82534 -34.63158 -31.21359 -29.67504 -28.69223 -26.77777 -25.67306 -24.96899 -22.56349 -21.62968 -21.20263 -19.49778 -18.52358 -18.40734 -18.23952 -17.60019 -17.43397 -16.72648 -16.57040 -15.84136 -15.69788 -15.29229 -15.16301 -14.82209 -14.66519 -14.48687 -14.31129 -14.19072 -13.68983 -13.53232 -13.08663 -12.95280 -12.79483 -12.67086 -12.34350 -12.26740 -12.01823 -11.96915 -11.90644 -11.90264 -11.57606 -11.17241 -10.81908 -10.49625 -8.96878 -8.10023 -6.20760 0.55720 1.30852 1.42545 1.45303 1.56309 1.87000 1.99412 2.43528 2.79312 3.13537 3.19420 3.33162 3.58960 3.69465 4.03075 4.26184 4.28071 4.31404 4.36737 4.50341 4.62422 4.69429 4.76018 4.84208 4.97238 5.06837 5.11729 5.14693 5.29669 5.52296 5.74585 5.80326 6.27758 6.36110 6.46437 6.70009 6.93019 7.48181 8.96171 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.032219 B = 0.004043 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.843662 B = 6923.417999 C = 7230.261213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.497 3.503 4 O -0.515 6.515 5 C -0.149 4.149 6 H 0.193 0.807 7 C -0.098 4.098 8 H 0.141 0.859 9 C 0.074 3.926 10 N -0.546 5.546 11 C 0.036 3.964 12 C 0.217 3.783 13 H -0.027 1.027 14 C -0.124 4.124 15 C -0.519 4.519 16 H 0.060 0.940 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.958 3.042 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.226 3.774 24 F -0.162 7.162 25 F -0.148 7.148 26 H 0.138 0.862 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.014 0.986 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.035 0.965 36 H 0.028 0.972 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.406 -12.223 -3.168 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.340 3.660 4 O -0.404 6.404 5 C -0.169 4.169 6 H 0.210 0.790 7 C -0.117 4.117 8 H 0.159 0.841 9 C -0.054 4.054 10 N -0.270 5.270 11 C -0.112 4.112 12 C 0.111 3.889 13 H -0.010 1.010 14 C -0.182 4.182 15 C -0.557 4.557 16 H 0.078 0.922 17 C -0.186 4.186 18 N -0.559 5.559 19 Si 0.784 3.216 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.208 1.208 23 C 0.189 3.811 24 F -0.143 7.143 25 F -0.129 7.129 26 H 0.156 0.844 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.455 -11.791 -3.633 19.776 hybrid contribution 0.387 0.706 0.624 1.019 sum -15.068 -11.084 -3.009 18.946 Atomic orbital electron populations 1.23686 0.73737 1.06257 1.02928 1.86470 1.25661 1.31305 1.83250 1.22155 0.89728 0.81908 0.72208 1.90701 1.66980 1.37266 1.45420 1.23483 0.90305 1.02888 1.00208 0.79015 1.23763 0.99855 0.94408 0.93720 0.84115 1.21725 0.93547 0.91719 0.98385 1.61993 1.03610 1.05719 1.55706 1.22272 0.95202 0.98858 0.94829 1.19062 0.83864 0.95294 0.90716 1.01001 1.21698 1.01604 0.96295 0.98600 1.21471 1.00268 0.92969 1.41016 0.92216 1.25668 0.96343 1.01604 0.95015 1.70016 1.07629 1.34837 1.43411 0.85506 0.78094 0.80484 0.77535 1.19294 1.20721 1.20779 1.19867 0.78908 1.01987 0.80298 1.93037 1.70942 1.91579 1.58721 1.93055 1.41399 1.85403 1.92998 0.84401 0.91346 0.91841 0.89126 0.92546 0.92078 0.96731 0.90896 0.92037 0.94607 0.95247 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.77 10.57 -51.43 -0.54 -7.31 16 3 C 0.50 11.76 7.37 71.24 0.53 12.29 16 4 O -0.52 -14.93 16.01 21.96 0.35 -14.58 16 5 C -0.15 -3.28 6.01 -11.54 -0.07 -3.35 16 6 H 0.19 2.97 8.14 -2.39 -0.02 2.95 16 7 C -0.10 -2.73 5.17 -10.81 -0.06 -2.78 16 8 H 0.14 4.17 5.89 -2.39 -0.01 4.16 16 9 C 0.07 2.42 5.04 86.30 0.43 2.85 16 10 N -0.55 -22.44 4.62 -901.45 -4.17 -26.61 16 11 C 0.04 1.37 9.07 127.69 1.16 2.53 16 12 C 0.22 10.75 2.06 44.17 0.09 10.84 16 13 H -0.03 -1.49 8.14 -2.39 -0.02 -1.51 16 14 C -0.12 -5.94 8.76 71.98 0.63 -5.31 16 15 C -0.52 -28.13 7.93 25.60 0.20 -27.92 16 16 H 0.06 3.23 6.40 -2.91 -0.02 3.22 16 17 C 0.01 0.68 5.30 84.66 0.45 1.12 16 18 N -0.92 -52.13 11.32 21.45 0.24 -51.89 16 19 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 C 0.23 6.19 5.13 30.58 0.16 6.35 16 24 F -0.16 -4.87 17.13 44.97 0.77 -4.10 16 25 F -0.15 -4.26 16.47 44.97 0.74 -3.52 16 26 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 28 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 29 H 0.09 3.00 4.74 -2.39 -0.01 2.99 16 30 H 0.06 1.71 8.12 -2.39 -0.02 1.69 16 31 H 0.06 2.50 6.24 -2.39 -0.01 2.49 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 2.31 6.22 -2.38 -0.01 2.30 16 34 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 35 H 0.04 1.47 6.20 -2.38 -0.01 1.46 16 36 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -63.83 314.54 5.23 -58.60 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.09 Total: 5.79 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 4.72 Total: -1.85 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -3.92 Total: -78.50 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.19 Total: -21.89 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 1.51 Total: -7.62 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -63.83 5.23 -58.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894001211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.182 kcal (2) G-P(sol) polarization free energy of solvation -63.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds