Wall clock time and date at job start Mon Mar 30 2020 01:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47413 * 359.89913 * 3 2 1 5 5 C 1.36935 * 120.00346 * 270.00437 * 4 3 2 6 6 H 1.08002 * 119.99394 * 345.29974 * 5 4 3 7 7 C 1.38810 * 120.00194 * 165.29932 * 5 4 3 8 8 N 1.31623 * 119.99854 * 59.32451 * 7 5 4 9 9 Si 1.86798 * 120.00118 * 239.31800 * 7 5 4 10 10 H 1.48501 * 109.47244 * 5.03476 * 9 7 5 11 11 H 1.48501 * 109.46687 * 125.02938 * 9 7 5 12 12 H 1.48497 * 109.47524 * 245.03098 * 9 7 5 13 13 C 1.46501 * 119.99572 * 89.99891 * 4 3 2 14 14 C 1.50701 * 109.47441 * 64.56172 * 13 4 3 15 15 C 1.38379 * 120.03963 * 254.21608 * 14 13 4 16 16 F 1.35099 * 119.99725 * 0.03396 * 15 14 13 17 17 C 1.38481 * 120.00590 * 180.02562 * 15 14 13 18 18 C 1.38246 * 120.08035 * 359.97373 * 17 15 14 19 19 C 1.38132 * 120.08550 * 359.78993 * 18 17 15 20 20 C 1.38670 * 120.03777 * 74.22662 * 14 13 4 21 21 O 1.35896 * 120.04703 * 359.96505 * 20 14 13 22 22 C 1.42899 * 117.00242 * 186.49703 * 21 20 14 23 23 C 1.53000 * 109.46999 * 177.88588 * 22 21 20 24 24 H 4.40644 * 5.51433 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.47140 * 239.89911 * 3 2 1 26 26 H 1.08998 * 109.47362 * 119.90010 * 3 2 1 27 27 H 0.96994 * 119.99636 * 186.44731 * 8 7 5 28 28 H 1.09002 * 109.47581 * 304.55666 * 13 4 3 29 29 H 1.09008 * 109.46578 * 184.55880 * 13 4 3 30 30 H 1.07993 * 119.95655 * 179.97438 * 17 15 14 31 31 H 1.08006 * 119.95326 * 180.02562 * 18 17 15 32 32 H 1.07995 * 120.00204 * 180.22988 * 19 18 17 33 33 H 1.08997 * 109.46867 * 57.88675 * 22 21 20 34 34 H 1.08997 * 109.46853 * 297.88942 * 22 21 20 35 35 H 1.08993 * 109.47444 * 296.03030 * 23 22 21 36 36 H 1.08994 * 109.46927 * 56.03576 * 23 22 21 37 37 H 1.09001 * 109.46633 * 176.02880 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 -1.3803 0.0024 5 6 3.3635 -2.0237 1.1894 6 1 3.4157 -1.4588 2.1084 7 6 3.5279 -3.4019 1.2115 8 7 4.4994 -3.9599 0.5206 9 14 2.3705 -4.4646 2.2217 10 1 1.2992 -3.6159 2.8025 11 1 1.7624 -5.5013 1.3496 12 1 3.1297 -5.1213 3.3160 13 6 3.3794 -2.0729 -1.2651 14 6 4.4963 -1.3845 -2.0066 15 6 4.2142 -0.6005 -3.1114 16 9 2.9369 -0.4513 -3.5255 17 6 5.2411 0.0314 -3.7925 18 6 6.5487 -0.1195 -3.3699 19 6 6.8338 -0.8974 -2.2646 20 6 5.8078 -1.5362 -1.5827 21 8 6.0876 -2.3052 -0.4977 22 6 7.4386 -2.3029 -0.0318 23 6 7.5483 -3.1777 1.2186 24 1 -1.0498 -0.0004 -0.0002 25 1 3.0091 0.5162 0.8891 26 1 3.0091 0.5131 -0.8908 27 1 4.5583 -4.9261 0.4600 28 1 2.4738 -2.0519 -1.8713 29 1 3.6592 -3.1075 -1.0657 30 1 5.0201 0.6428 -4.6549 31 1 7.3480 0.3746 -3.9024 32 1 7.8554 -1.0113 -1.9334 33 1 7.7374 -1.2832 0.2108 34 1 8.0918 -2.6976 -0.8099 35 1 6.9497 -2.7436 2.0194 36 1 7.1829 -4.1797 0.9941 37 1 8.5905 -3.2330 1.5330 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897164523.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:08 Heat of formation + Delta-G solvation = 43.029376 kcal Electronic energy + Delta-G solvation = -22281.301100 eV Core-core repulsion = 18942.088347 eV Total energy + Delta-G solvation = -3339.212753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.34177 -39.41633 -36.65552 -35.90943 -32.63508 -31.82262 -30.80761 -30.08944 -28.85556 -26.37024 -25.52693 -23.27009 -22.18853 -21.06836 -20.39367 -17.75485 -17.42403 -16.78245 -16.16482 -15.42113 -15.34526 -15.18270 -14.91069 -14.47801 -13.74595 -13.66749 -13.56428 -13.53167 -12.61421 -12.41419 -12.13132 -11.93349 -11.88374 -11.60350 -11.47012 -11.10393 -11.05943 -10.83890 -10.40763 -10.24157 -10.02883 -9.97215 -9.81671 -9.47303 -9.23902 -8.24102 -7.88694 -7.51312 -7.19935 -6.11919 -2.89633 1.68410 1.91489 3.43087 3.64293 3.65116 3.72489 3.76156 3.96311 4.18885 4.66020 4.90908 4.99836 5.24147 5.32076 5.44821 5.47154 5.57287 5.68322 5.74503 5.86765 5.89701 5.95478 6.26944 6.35697 6.43419 6.48284 6.55390 6.57254 6.70281 6.78252 6.82920 6.93780 7.14595 7.32218 7.48591 7.87378 8.17010 8.34096 8.51740 9.05040 9.80844 10.33133 10.86164 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013192 B = 0.009916 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.926137 B = 2822.944631 C = 4411.337905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.158 4.158 3 C 0.248 3.752 4 N -0.569 5.569 5 C -0.300 4.300 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.774 5.774 9 Si 0.780 3.220 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.295 1.295 13 C 0.172 3.828 14 C -0.156 4.156 15 C 0.124 3.876 16 F -0.141 7.141 17 C -0.212 4.212 18 C -0.067 4.067 19 C -0.242 4.242 20 C 0.186 3.814 21 O -0.212 6.212 22 C 0.058 3.942 23 C -0.133 4.133 24 H 0.202 0.798 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.251 0.749 28 H 0.024 0.976 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.043 0.957 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 5.192 -5.667 10.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.161 4.161 3 C 0.121 3.879 4 N -0.288 5.288 5 C -0.423 4.423 6 H 0.097 0.903 7 C -0.136 4.136 8 N -0.409 5.409 9 Si 0.602 3.398 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.223 1.223 13 C 0.047 3.953 14 C -0.160 4.160 15 C 0.103 3.897 16 F -0.119 7.119 17 C -0.231 4.231 18 C -0.086 4.086 19 C -0.262 4.262 20 C 0.136 3.864 21 O -0.120 6.120 22 C -0.018 4.018 23 C -0.190 4.190 24 H 0.219 0.781 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.528 4.893 -5.501 9.840 hybrid contribution -0.961 -0.505 0.291 1.124 sum 5.568 4.388 -5.210 8.798 Atomic orbital electron populations 1.24649 0.95712 1.03466 1.04445 1.25218 0.96170 0.97460 0.97223 1.17783 0.82425 0.87663 1.00015 1.43969 1.72247 1.10268 1.02287 1.18667 1.49394 0.89259 0.84946 0.90263 1.24602 0.96963 0.96343 0.95662 1.70985 1.20413 1.10442 1.39035 0.88038 0.88049 0.82085 0.81596 1.20432 1.21534 1.22302 1.20387 0.90464 0.99542 0.84921 1.20303 0.96074 1.02868 0.96755 1.17329 0.78494 0.98815 0.95014 1.91449 1.36703 1.94232 1.89537 1.20777 0.92581 1.06342 1.03433 1.20509 0.95302 0.97194 0.95568 1.21271 0.98844 1.05527 1.00509 1.18774 0.91835 0.88689 0.87101 1.87036 1.26323 1.59188 1.39481 1.22599 0.83616 0.99020 0.96551 1.21527 0.99573 1.01373 0.96569 0.78072 0.91181 0.92233 0.93797 0.95773 0.85783 0.85979 0.86127 0.85925 0.93862 0.94036 0.91390 0.90907 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.16 19.25 29.55 0.57 -4.59 16 2 C -0.16 -3.40 13.68 -37.12 -0.51 -3.91 16 3 C 0.25 5.35 6.03 -6.83 -0.04 5.31 16 4 N -0.57 -13.74 2.59 -177.95 -0.46 -14.20 16 5 C -0.30 -7.80 9.49 -15.06 -0.14 -7.94 16 6 H 0.08 2.12 8.04 -52.49 -0.42 1.70 16 7 C 0.07 1.78 4.50 -17.43 -0.08 1.70 16 8 N -0.77 -19.18 8.75 55.49 0.49 -18.70 16 9 Si 0.78 19.60 29.70 -169.99 -5.05 14.55 16 10 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 13 C 0.17 4.05 5.30 -5.19 -0.03 4.02 16 14 C -0.16 -3.25 4.75 -104.41 -0.50 -3.74 16 15 C 0.12 2.34 6.80 -39.44 -0.27 2.08 16 16 F -0.14 -2.74 16.26 2.25 0.04 -2.71 16 17 C -0.21 -3.38 10.02 -39.49 -0.40 -3.78 16 18 C -0.07 -0.99 10.04 -39.62 -0.40 -1.39 16 19 C -0.24 -3.95 9.05 -39.42 -0.36 -4.31 16 20 C 0.19 3.67 6.65 -39.22 -0.26 3.40 16 21 O -0.21 -4.39 6.80 -19.41 -0.13 -4.53 16 22 C 0.06 0.97 5.47 37.16 0.20 1.17 16 23 C -0.13 -2.16 10.15 37.16 0.38 -1.79 16 24 H 0.20 3.11 7.80 -54.10 -0.42 2.69 16 25 H 0.07 1.45 8.02 -51.93 -0.42 1.03 16 26 H 0.06 1.23 7.09 -51.93 -0.37 0.86 16 27 H 0.25 6.10 8.32 -40.82 -0.34 5.76 16 28 H 0.02 0.58 7.26 -51.93 -0.38 0.20 16 29 H 0.12 3.18 4.78 -51.92 -0.25 2.93 16 30 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 32 H 0.12 1.72 6.32 -52.49 -0.33 1.39 16 33 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 34 H 0.04 0.61 7.52 -51.93 -0.39 0.22 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.29 8.07 -51.93 -0.42 0.88 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -27.70 320.04 -6.75 -34.45 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -4.63 Total: 0.06 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.82 Total: -13.76 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: 0.02 Total: -32.89 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.13 Total: -4.53 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.05 Total: 14.55 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.70 -6.75 -34.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164523.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.480 kcal (2) G-P(sol) polarization free energy of solvation -27.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds