Wall clock time and date at job start Mon Mar 30 2020 01:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29356 * 120.00157 * 2 1 4 4 O 1.41602 * 119.99777 * 6.00327 * 3 2 1 5 5 C 1.42899 * 113.99723 * 184.86117 * 4 3 2 6 6 C 1.53009 * 109.47064 * 175.62211 * 5 4 3 7 7 C 1.50705 * 115.54817 * 306.85917 * 6 5 4 8 8 H 1.07999 * 119.99701 * 143.59447 * 7 6 5 9 9 C 1.37870 * 120.00067 * 323.59074 * 7 6 5 10 10 N 1.31519 * 120.00289 * 351.08462 * 9 7 6 11 11 Si 1.86803 * 119.99979 * 171.07998 * 9 7 6 12 12 H 1.48498 * 109.46827 * 90.00174 * 11 9 7 13 13 H 1.48505 * 109.46990 * 210.00059 * 11 9 7 14 14 H 1.48496 * 109.47187 * 330.00262 * 11 9 7 15 15 C 1.52995 * 117.49962 * 161.18578 * 6 5 4 16 16 C 1.52998 * 117.49512 * 92.52456 * 6 5 4 17 17 C 1.47594 * 119.99894 * 179.73056 * 2 1 3 18 18 C 1.39644 * 120.12409 * 359.72383 * 17 2 1 19 19 C 1.37888 * 119.87566 * 179.72561 * 18 17 2 20 20 C 1.38610 * 120.12173 * 0.54553 * 19 18 17 21 21 F 1.35092 * 119.87618 * 179.70188 * 20 19 18 22 22 C 1.38615 * 120.24924 * 359.73080 * 20 19 18 23 23 C 1.37886 * 120.12170 * 359.97438 * 22 20 19 24 24 H 1.09006 * 109.47081 * 269.10710 * 1 2 3 25 25 H 1.08994 * 109.47397 * 29.10431 * 1 2 3 26 26 H 1.08999 * 109.47545 * 149.10736 * 1 2 3 27 27 H 1.08994 * 109.47796 * 295.62432 * 5 4 3 28 28 H 1.09002 * 109.47383 * 55.62981 * 5 4 3 29 29 H 0.96996 * 120.00698 * 185.04374 * 10 9 7 30 30 H 1.09004 * 117.50006 * 0.02562 * 15 6 5 31 31 H 1.09000 * 117.49773 * 145.02102 * 15 6 5 32 32 H 1.08994 * 117.49795 * 214.97697 * 16 6 5 33 33 H 1.08995 * 117.50233 * 359.97438 * 16 6 5 34 34 H 1.08000 * 120.06415 * 359.97438 * 18 17 2 35 35 H 1.07999 * 119.93628 * 180.27712 * 19 18 17 36 36 H 1.07998 * 119.94175 * 179.97438 * 22 20 19 37 37 H 1.08006 * 120.05899 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1537 1.1202 0.0000 4 8 1.4515 2.3432 0.1283 5 6 2.2767 3.5031 0.0029 6 6 1.4027 4.7581 0.0483 7 6 0.2563 4.7875 -0.9295 8 1 -0.6851 5.2335 -0.6446 9 6 0.4094 4.2452 -2.1878 10 7 1.5986 3.8618 -2.5985 11 14 -1.0722 4.0548 -3.3094 12 1 -1.2333 5.2824 -4.1293 13 1 -0.8699 2.8859 -4.2027 14 1 -2.2913 3.8448 -2.4879 15 6 2.0900 6.0863 0.3713 16 6 1.1861 5.4191 1.4110 17 6 2.2449 -1.2782 0.0060 18 6 1.5493 -2.4890 0.0175 19 6 2.2438 -3.6802 0.0174 20 6 3.6299 -3.6772 0.0172 21 9 4.3054 -4.8471 0.0232 22 6 4.3256 -2.4783 0.0116 23 6 3.6413 -1.2812 0.0056 24 1 -0.3633 -0.0160 1.0276 25 1 -0.3634 0.8978 -0.4998 26 1 -0.3634 -0.8818 -0.5276 27 1 2.9935 3.5296 0.8235 28 1 2.8120 3.4674 -0.9460 29 1 1.7198 3.5485 -3.5084 30 1 3.1649 6.0661 0.5511 31 1 1.7128 6.9815 -0.1231 32 1 0.2146 5.8757 1.6001 33 1 1.6658 4.9597 2.2752 34 1 0.4693 -2.4925 0.0225 35 1 1.7068 -4.6172 0.0217 36 1 5.4056 -2.4817 0.0120 37 1 4.1844 -0.3476 0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902856090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:01 Heat of formation + Delta-G solvation = 4.325772 kcal Electronic energy + Delta-G solvation = -20694.238051 eV Core-core repulsion = 17353.346984 eV Total energy + Delta-G solvation = -3340.891067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.92711 -40.23807 -38.97417 -37.58180 -35.28472 -34.16188 -32.32568 -30.85959 -29.26869 -27.78385 -26.85077 -24.15999 -23.75467 -22.98249 -21.04998 -20.60920 -18.72683 -18.31408 -17.73491 -16.89863 -16.78290 -16.60924 -16.56459 -15.94550 -15.66300 -15.40098 -14.94764 -14.58608 -14.57787 -14.29431 -14.04965 -13.55394 -13.40937 -13.26906 -12.91985 -12.86149 -12.77116 -12.38309 -12.21557 -12.02434 -11.91632 -11.46009 -11.11485 -10.79302 -10.60324 -10.46730 -10.13004 -10.01461 -9.30069 -8.03854 -6.16622 -0.30859 0.25956 1.37363 1.37457 1.39996 1.49563 1.90091 2.40475 2.69971 3.04060 3.21229 3.47577 3.60918 3.77834 3.91960 4.16920 4.26044 4.32527 4.37352 4.44451 4.52575 4.65717 4.67231 4.80385 4.91346 4.92369 4.98026 5.04373 5.07792 5.12343 5.21153 5.30970 5.44809 5.47921 5.53436 5.82622 5.84301 5.87685 6.36452 6.70984 6.85515 7.45437 8.93764 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.004296 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.190613 B = 6515.623340 C = 7142.658514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.147 3.853 3 N -0.366 5.366 4 O -0.217 6.217 5 C 0.131 3.869 6 C 0.015 3.985 7 C -0.503 4.503 8 H 0.051 0.949 9 C 0.036 3.964 10 N -0.900 5.900 11 Si 0.946 3.054 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.269 1.269 15 C -0.185 4.185 16 C -0.190 4.190 17 C -0.065 4.065 18 C -0.056 4.056 19 C -0.147 4.147 20 C 0.100 3.900 21 F -0.141 7.141 22 C -0.157 4.157 23 C -0.068 4.068 24 H 0.094 0.906 25 H 0.048 0.952 26 H 0.108 0.892 27 H 0.015 0.985 28 H 0.071 0.929 29 H 0.258 0.742 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.169 0.831 35 H 0.170 0.830 36 H 0.153 0.847 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 -15.449 5.122 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.041 4.041 3 N -0.111 5.111 4 O -0.233 6.233 5 C 0.054 3.946 6 C 0.013 3.987 7 C -0.541 4.541 8 H 0.069 0.931 9 C -0.164 4.164 10 N -0.537 5.537 11 Si 0.772 3.228 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.193 1.193 15 C -0.223 4.223 16 C -0.227 4.227 17 C -0.067 4.067 18 C -0.076 4.076 19 C -0.165 4.165 20 C 0.079 3.921 21 F -0.120 7.120 22 C -0.176 4.176 23 C -0.088 4.088 24 H 0.112 0.888 25 H 0.067 0.933 26 H 0.126 0.874 27 H 0.033 0.967 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.186 0.814 35 H 0.188 0.812 36 H 0.171 0.829 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.979 -15.112 4.962 16.029 hybrid contribution -0.868 0.248 -0.742 1.168 sum 1.111 -14.865 4.220 15.492 Atomic orbital electron populations 1.21259 0.90478 1.03934 1.04335 1.23486 0.95605 0.90751 0.94278 1.76251 1.27876 0.93201 1.13723 1.89893 1.32717 1.10091 1.90648 1.21835 0.91919 0.81999 0.98862 1.19026 0.97035 0.88796 0.93859 1.20645 0.97135 1.38266 0.98022 0.93069 1.25525 0.97864 0.93939 0.99093 1.69960 1.22780 1.44082 1.16900 0.85740 0.80551 0.77748 0.78809 1.19925 1.21089 1.19308 1.22942 0.96888 0.98242 1.04203 1.22953 1.00351 1.06238 0.93204 1.18508 0.93036 0.90289 1.04831 1.21404 1.01896 0.89049 0.95269 1.21339 0.91673 1.00530 1.02988 1.18047 0.90958 0.80964 1.02086 1.91496 1.80565 1.46143 1.93789 1.21217 1.01926 0.90476 1.03953 1.21259 0.93477 0.98352 0.95705 0.88754 0.93327 0.87385 0.96684 0.91147 0.93284 0.90019 0.90174 0.90022 0.89617 0.81403 0.81206 0.82942 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 9.20 71.23 0.66 -3.60 16 2 C 0.15 5.11 7.11 45.39 0.32 5.43 16 3 N -0.37 -15.94 10.47 -42.92 -0.45 -16.39 16 4 O -0.22 -10.94 9.83 -38.79 -0.38 -11.32 16 5 C 0.13 6.68 5.46 71.99 0.39 7.08 16 6 C 0.01 0.75 2.11 -52.93 -0.11 0.63 16 7 C -0.50 -28.08 8.75 25.60 0.22 -27.86 16 8 H 0.05 2.85 7.83 -2.91 -0.02 2.82 16 9 C 0.04 2.01 5.21 84.65 0.44 2.45 16 10 N -0.90 -51.49 10.76 21.45 0.23 -51.26 16 11 Si 0.95 43.77 29.55 68.60 2.03 45.80 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 C -0.18 -8.30 9.96 30.62 0.30 -7.99 16 16 C -0.19 -8.28 9.92 30.62 0.30 -7.98 16 17 C -0.07 -1.77 5.87 -20.13 -0.12 -1.89 16 18 C -0.06 -1.08 9.36 22.53 0.21 -0.86 16 19 C -0.15 -2.47 10.01 22.28 0.22 -2.24 16 20 C 0.10 2.01 7.30 22.45 0.16 2.17 16 21 F -0.14 -2.90 17.26 44.97 0.78 -2.12 16 22 C -0.16 -3.43 10.01 22.28 0.22 -3.21 16 23 C -0.07 -1.82 9.57 22.53 0.22 -1.61 16 24 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 25 H 0.05 1.87 7.44 -2.39 -0.02 1.85 16 26 H 0.11 2.31 6.55 -2.39 -0.02 2.29 16 27 H 0.02 0.72 8.08 -2.39 -0.02 0.70 16 28 H 0.07 3.99 6.06 -2.39 -0.01 3.98 16 29 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 30 H 0.08 3.37 8.14 -2.38 -0.02 3.35 16 31 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 32 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 34 H 0.17 2.21 6.39 -2.91 -0.02 2.19 16 35 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.13 3.79 7.55 -2.91 -0.02 3.77 16 Total: -1.00 -65.09 324.07 6.73 -58.36 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 1.07 Total: 16.39 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 3.45 Total: -39.47 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: -0.22 Total: -67.64 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.38 Total: -11.32 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -65.09 6.73 -58.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902856090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.686 kcal (2) G-P(sol) polarization free energy of solvation -65.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds