Wall clock time and date at job start Mon Mar 30 2020 01:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 119.99864 * 2 1 4 4 C 1.50695 * 109.47062 * 275.53911 * 3 2 1 5 5 H 1.07996 * 119.99936 * 4.96111 * 4 3 2 6 6 C 1.37881 * 119.99890 * 184.95116 * 4 3 2 7 7 N 1.31509 * 119.99808 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99807 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47113 * 89.99698 * 8 6 4 10 10 H 1.48501 * 109.46575 * 209.99667 * 8 6 4 11 11 H 1.48501 * 109.47140 * 329.99495 * 8 6 4 12 12 S 1.65600 * 119.99826 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40143 * 159.49962 * 12 2 1 14 14 O 1.42105 * 106.40487 * 26.58351 * 12 2 1 15 15 N 1.65598 * 107.22041 * 273.04171 * 12 2 1 16 16 C 1.46500 * 119.99731 * 62.73239 * 15 12 2 17 17 C 1.53003 * 109.46892 * 164.34613 * 16 15 12 18 18 H 1.08998 * 112.78540 * 56.30702 * 17 16 15 19 19 C 1.53512 * 113.47379 * 187.11212 * 17 16 15 20 20 C 1.53510 * 83.57573 * 140.79362 * 19 17 16 21 21 N 1.47481 * 113.47705 * 285.49416 * 17 16 15 22 22 C 1.46891 * 111.00095 * 106.53035 * 21 17 16 23 23 H 1.09001 * 109.47157 * 270.00105 * 1 2 3 24 24 H 1.09002 * 109.47488 * 30.00314 * 1 2 3 25 25 H 1.09008 * 109.47057 * 150.00099 * 1 2 3 26 26 H 1.08995 * 109.47232 * 35.54760 * 3 2 1 27 27 H 1.09006 * 109.46412 * 155.54076 * 3 2 1 28 28 H 0.97003 * 120.00036 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00271 * 242.72807 * 15 12 2 30 30 H 1.08996 * 109.47501 * 44.34695 * 16 15 12 31 31 H 1.09000 * 109.47093 * 284.34097 * 16 15 12 32 32 H 1.08994 * 114.17334 * 27.14286 * 19 17 16 33 33 H 1.09004 * 114.34191 * 254.44704 * 19 17 16 34 34 H 1.08998 * 113.47656 * 219.21217 * 20 19 17 35 35 H 1.08996 * 113.47814 * 88.73747 * 20 19 17 36 36 H 1.08997 * 109.47302 * 177.49358 * 22 21 17 37 37 H 1.09003 * 109.47561 * 57.49774 * 22 21 17 38 38 H 1.09001 * 109.47566 * 297.49790 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3298 1.7723 -1.4141 5 1 1.8423 1.2472 -2.2222 6 6 3.0731 2.9036 -1.6763 7 7 3.1882 3.3434 -2.9104 8 14 3.9166 3.8116 -0.2787 9 1 5.2820 3.2612 -0.0836 10 1 4.0079 5.2561 -0.6107 11 1 3.1305 3.6393 0.9693 12 16 2.2929 -1.4342 0.0006 13 8 3.5994 -1.1435 -0.4769 14 8 1.4378 -2.3915 -0.6090 15 7 2.4654 -1.9000 1.5804 16 6 1.2808 -2.1928 2.3911 17 6 1.6996 -2.9582 3.6480 18 1 2.4470 -2.4264 4.2367 19 6 0.5126 -3.4640 4.4798 20 6 1.3946 -4.7066 4.6658 21 7 2.0494 -4.3672 3.3886 22 6 3.5016 -4.5727 3.4706 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5139 25 1 -0.3633 -0.8901 -0.5139 26 1 1.6550 2.0014 0.5974 27 1 3.1893 1.1156 0.4255 28 1 3.7115 4.1390 -3.0949 29 1 3.3506 -1.9791 1.9689 30 1 0.5846 -2.7990 1.8117 31 1 0.7974 -1.2591 2.6786 32 1 -0.3938 -3.6425 3.9015 33 1 0.3345 -2.9019 5.3966 34 1 0.8379 -5.6431 4.6329 35 1 2.0608 -4.6414 5.5260 36 1 3.7283 -5.6281 3.3193 37 1 3.8577 -4.2618 4.4528 38 1 3.9964 -3.9808 2.7006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921415297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:54 Heat of formation + Delta-G solvation = -63.167856 kcal Electronic energy + Delta-G solvation = -20618.090313 eV Core-core repulsion = 17429.636415 eV Total energy + Delta-G solvation = -3188.453898 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.11551 -38.30035 -37.29131 -36.85595 -35.85514 -34.50113 -31.66555 -30.26445 -28.66080 -26.77470 -25.10829 -23.99326 -23.80840 -20.97019 -20.12935 -19.15723 -18.64053 -18.27098 -17.52381 -17.04556 -16.62390 -16.13474 -16.01739 -15.40785 -15.16734 -14.72114 -14.49669 -14.35346 -14.06301 -14.01935 -13.41997 -13.39561 -13.19915 -13.10149 -12.98765 -12.95686 -12.41105 -12.34745 -12.29976 -12.21996 -12.01631 -11.77653 -11.70352 -11.47137 -10.77958 -10.42468 -9.83287 -9.74161 -8.29027 -6.35103 -0.34900 1.36856 1.41806 1.49911 2.05494 2.36190 2.62221 3.05517 3.07393 3.44209 3.55176 3.86679 4.01634 4.14602 4.17880 4.31718 4.43311 4.49689 4.61102 4.69916 4.70852 4.76314 4.84850 4.90446 4.96462 4.97982 5.05636 5.11119 5.29195 5.35180 5.41987 5.48829 5.73447 6.09920 6.15561 6.31589 6.68249 7.28335 8.88682 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028462 B = 0.004945 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.516015 B = 5661.325720 C = 5797.952638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.998 5.998 3 C 0.235 3.765 4 C -0.547 4.547 5 H 0.027 0.973 6 C 0.006 3.994 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.226 1.226 12 S 2.798 3.202 13 O -1.015 7.015 14 O -1.013 7.013 15 N -1.114 6.114 16 C 0.128 3.872 17 C 0.018 3.982 18 H 0.098 0.902 19 C -0.127 4.127 20 C -0.004 4.004 21 N -0.499 5.499 22 C -0.016 4.016 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.268 0.732 29 H 0.418 0.582 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.039 -12.064 22.315 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.839 5.839 3 C 0.111 3.889 4 C -0.587 4.587 5 H 0.045 0.955 6 C -0.192 4.192 7 N -0.589 5.589 8 Si 0.767 3.233 9 H -0.197 1.197 10 H -0.204 1.204 11 H -0.148 1.148 12 S 2.806 3.194 13 O -0.999 6.999 14 O -0.996 6.996 15 N -0.878 5.878 16 C 0.002 3.998 17 C -0.093 4.093 18 H 0.115 0.885 19 C -0.166 4.166 20 C -0.132 4.132 21 N -0.222 5.222 22 C -0.165 4.165 23 H 0.106 0.894 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.253 0.747 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.035 -12.735 20.715 24.832 hybrid contribution 1.335 0.967 0.536 1.733 sum -3.700 -11.767 21.251 24.571 Atomic orbital electron populations 1.21661 0.77775 1.03459 1.03088 1.57289 1.15855 1.21317 1.89489 1.19209 0.92032 0.82364 0.95330 1.21754 1.31859 1.10998 0.94052 0.95457 1.25973 0.96465 0.98057 0.98685 1.70076 1.42130 1.24985 1.21756 0.85760 0.79658 0.77540 0.80339 1.19687 1.20396 1.14813 1.01202 0.71950 0.72556 0.73726 1.93563 1.41279 1.85262 1.79771 1.93505 1.69146 1.61178 1.75732 1.55674 1.15460 1.84879 1.31738 1.21527 0.86257 1.00043 0.91955 1.23731 0.99633 0.90847 0.95070 0.88451 1.23177 0.96617 0.96262 1.00495 1.23845 0.97657 1.00193 0.91510 1.68934 1.10662 1.10422 1.32200 1.22937 0.89586 1.02837 1.01129 0.89417 0.91300 0.91324 0.92315 0.94722 0.92345 0.74667 0.90855 0.89067 0.88462 0.87992 0.89458 0.89929 0.91043 0.92925 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.68 10.69 127.77 1.37 4.04 16 2 N -1.00 -39.24 3.23 -543.22 -1.75 -41.00 16 3 C 0.24 10.76 4.16 85.63 0.36 11.11 16 4 C -0.55 -32.12 9.93 25.60 0.25 -31.87 16 5 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 6 C 0.01 0.35 5.47 84.66 0.46 0.81 16 7 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 8 Si 0.95 42.89 27.37 68.60 1.88 44.77 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.23 -8.74 6.69 99.48 0.67 -8.07 16 12 S 2.80 109.64 6.09 -56.49 -0.34 109.29 16 13 O -1.01 -49.31 16.99 -128.00 -2.18 -51.48 16 14 O -1.01 -43.47 16.34 -128.00 -2.09 -45.56 16 15 N -1.11 -29.83 6.05 -187.49 -1.13 -30.96 16 16 C 0.13 2.62 6.27 86.38 0.54 3.16 16 17 C 0.02 0.28 3.15 42.19 0.13 0.42 16 18 H 0.10 1.27 7.89 -2.39 -0.02 1.25 16 19 C -0.13 -1.38 8.01 30.94 0.25 -1.14 16 20 C 0.00 -0.04 7.70 83.57 0.64 0.60 16 21 N -0.50 -9.26 6.52 -928.42 -6.05 -15.31 16 22 C -0.02 -0.27 9.67 127.69 1.23 0.97 16 23 H 0.09 1.91 8.06 -2.39 -0.02 1.89 16 24 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 25 H 0.07 2.15 7.05 -2.38 -0.02 2.13 16 26 H 0.06 2.39 7.51 -2.39 -0.02 2.37 16 27 H 0.03 1.57 6.66 -2.38 -0.02 1.55 16 28 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.42 9.79 8.01 -96.75 -0.77 9.02 16 30 H 0.07 1.70 7.79 -2.39 -0.02 1.68 16 31 H 0.09 1.47 8.06 -2.39 -0.02 1.45 16 32 H 0.10 1.10 8.12 -2.39 -0.02 1.08 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 0.77 7.58 -2.39 -0.02 0.76 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 0.68 7.55 -2.39 -0.02 0.66 16 38 H 0.06 1.12 7.49 -2.39 -0.02 1.10 16 Total: -1.00 -80.90 323.13 -5.90 -86.80 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.23 Total: 15.74 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 5.24 Total: -11.89 kcal Atomic # 7 Polarization: -139.03 SS G_CDS: -8.64 Total: -147.67 kcal Atomic # 8 Polarization: -92.78 SS G_CDS: -4.27 Total: -97.05 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.77 kcal Atomic # 16 Polarization: 109.64 SS G_CDS: -0.34 Total: 109.29 kcal Total: -80.90 -5.90 -86.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921415297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.633 kcal (2) G-P(sol) polarization free energy of solvation -80.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds