Wall clock time and date at job start Mon Mar 30 2020 01:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.50710 * 109.47211 * 84.99665 * 3 2 1 5 5 H 1.08006 * 119.99595 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00111 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99826 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00161 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46753 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47459 * 119.99726 * 8 6 4 11 11 H 1.48501 * 109.47022 * 240.00061 * 8 6 4 12 12 S 1.65600 * 120.00084 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.40015 * 203.54551 * 12 2 1 14 14 O 1.42097 * 106.40174 * 336.46115 * 12 2 1 15 15 N 1.65599 * 107.22069 * 90.00328 * 12 2 1 16 16 C 1.46493 * 120.00048 * 64.99840 * 15 12 2 17 17 C 1.52997 * 109.47198 * 165.00236 * 16 15 12 18 18 H 1.08993 * 112.74809 * 304.66960 * 17 16 15 19 19 C 1.53519 * 113.47774 * 173.89368 * 17 16 15 20 20 C 1.53632 * 83.53719 * 219.23051 * 19 17 16 21 21 N 1.47484 * 87.95367 * 25.97620 * 20 19 17 22 22 C 1.46894 * 111.00338 * 221.35177 * 21 20 19 23 23 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 24 24 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 25 25 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 26 26 H 1.08992 * 109.47737 * 204.99718 * 3 2 1 27 27 H 1.09002 * 109.47072 * 324.99914 * 3 2 1 28 28 H 0.97007 * 119.99675 * 179.97438 * 7 6 4 29 29 H 0.97004 * 119.99974 * 245.00532 * 15 12 2 30 30 H 1.09004 * 109.47265 * 285.00707 * 16 15 12 31 31 H 1.09005 * 109.47211 * 44.99950 * 16 15 12 32 32 H 1.08996 * 114.16819 * 332.86136 * 19 17 16 33 33 H 1.09002 * 114.16155 * 105.56324 * 19 17 16 34 34 H 1.09007 * 113.41855 * 271.21481 * 20 19 17 35 35 H 1.08999 * 113.56963 * 140.77138 * 20 19 17 36 36 H 1.08990 * 109.47398 * 155.97317 * 22 21 20 37 37 H 1.09004 * 109.47101 * 275.97262 * 22 21 20 38 38 H 1.09005 * 109.47445 * 35.96570 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 1.4155 5 1 1.9288 1.1935 2.2333 6 6 2.9997 2.9508 1.6664 7 7 3.5026 3.6473 0.6706 8 14 3.1787 3.5666 3.4209 9 1 2.5311 2.6068 4.3507 10 1 4.6197 3.6878 3.7585 11 1 2.5270 4.8948 3.5483 12 16 2.2930 -1.4341 0.0006 13 8 3.5759 -1.1565 0.5451 14 8 1.4114 -2.4062 0.5455 15 7 2.5382 -1.8594 -1.5809 16 6 3.3863 -1.0291 -2.4396 17 6 3.7523 -1.8100 -3.7033 18 1 4.2232 -2.7684 -3.4850 19 6 4.5181 -0.9741 -4.7386 20 6 3.6483 -1.7421 -5.7456 21 7 2.6471 -1.9064 -4.6752 22 6 2.0766 -3.2599 -4.6910 23 1 -0.3634 0.0000 1.0277 24 1 -0.3633 -0.8900 -0.5138 25 1 -0.3633 0.8900 -0.5139 26 1 3.1858 1.1177 -0.4342 27 1 1.6502 2.0043 -0.5895 28 1 3.9654 4.4814 0.8471 29 1 2.1202 -2.6582 -1.9388 30 1 2.8472 -0.1229 -2.7158 31 1 4.2959 -0.7610 -1.9019 32 1 4.3089 0.0946 -4.6921 33 1 5.5817 -1.2047 -4.7996 34 1 4.0922 -2.6824 -6.0729 35 1 3.2991 -1.1291 -6.5765 36 1 1.6932 -3.5043 -3.7005 37 1 1.2638 -3.3032 -5.4160 38 1 2.8495 -3.9768 -4.9686 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921415298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:56 Heat of formation + Delta-G solvation = -36.236181 kcal Electronic energy + Delta-G solvation = -20688.428111 eV Core-core repulsion = 17501.142058 eV Total energy + Delta-G solvation = -3187.286052 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33194 -36.56707 -35.44322 -35.10013 -34.59922 -32.39702 -30.92678 -27.79209 -27.59588 -25.01910 -24.37166 -23.05846 -22.23612 -19.96254 -18.79575 -17.30819 -16.73221 -16.47007 -16.21423 -15.81293 -15.11169 -15.08125 -14.61489 -14.14219 -13.37719 -13.35198 -13.34248 -13.13094 -12.44371 -12.27465 -12.08293 -11.92902 -11.65487 -11.57037 -11.53228 -11.32158 -11.11895 -11.07894 -10.99940 -10.65305 -10.54950 -10.38095 -9.98235 -9.71066 -9.25576 -9.03903 -8.41599 -8.01034 -6.03690 -4.06955 1.29201 3.33294 3.40706 3.46372 3.55970 3.82757 4.17973 4.32808 4.47706 4.61581 4.88384 5.00291 5.09027 5.12432 5.20503 5.25064 5.30467 5.49159 5.58151 5.64201 5.66136 5.76863 5.83814 6.00938 6.12896 6.16123 6.19810 6.39851 6.58111 6.87768 7.15646 7.30226 7.44146 7.66296 7.94379 8.24082 8.95581 9.58108 11.04942 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022418 B = 0.005461 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.721361 B = 5126.268843 C = 5782.792448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.997 5.997 3 C 0.256 3.744 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.284 1.284 12 S 2.783 3.217 13 O -0.965 6.965 14 O -1.001 7.001 15 N -1.133 6.133 16 C 0.138 3.862 17 C 0.019 3.981 18 H 0.083 0.917 19 C -0.138 4.138 20 C -0.004 4.004 21 N -0.468 5.468 22 C -0.013 4.013 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.262 0.738 29 H 0.404 0.596 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.958 -10.660 -13.136 16.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.840 5.840 3 C 0.134 3.866 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.210 1.210 12 S 2.790 3.210 13 O -0.948 6.948 14 O -0.985 6.985 15 N -0.892 5.892 16 C 0.011 3.989 17 C -0.091 4.091 18 H 0.101 0.899 19 C -0.177 4.177 20 C -0.133 4.133 21 N -0.191 5.191 22 C -0.162 4.162 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.236 0.764 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.097 -10.383 -12.279 16.118 hybrid contribution 0.355 -0.400 0.357 0.643 sum -0.742 -10.783 -11.922 16.092 Atomic orbital electron populations 1.21177 0.79991 1.01121 1.01292 1.57600 1.14296 1.23339 1.88745 1.19091 0.90986 0.78824 0.97690 1.21540 1.35793 1.06222 0.93022 0.92179 1.24920 0.95155 0.96516 0.97438 1.69928 1.37549 1.15291 1.30811 0.86464 0.77948 0.78474 0.84692 1.19679 1.20823 1.21006 1.01908 0.73626 0.72569 0.72863 1.93619 1.40652 1.84681 1.75844 1.93535 1.67189 1.60971 1.76813 1.56190 1.63437 1.37241 1.32337 1.21220 0.94857 0.93308 0.89544 1.23662 0.92306 0.99499 0.93666 0.89884 1.23215 0.98904 1.00883 0.94693 1.23815 0.93080 1.00094 0.96333 1.68940 1.20306 1.25751 1.04085 1.22929 1.00342 0.90151 1.02817 0.93266 0.93048 0.91523 0.94437 0.94719 0.92795 0.76364 0.90566 0.89635 0.88029 0.90212 0.91508 0.89557 0.91337 0.90987 0.94655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.97 10.33 59.85 0.62 2.59 16 2 N -1.00 -21.02 3.23 -123.05 -0.40 -21.41 16 3 C 0.26 6.41 5.12 -5.19 -0.03 6.38 16 4 C -0.53 -14.91 9.38 -34.44 -0.32 -15.23 16 5 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.06 13.29 55.43 0.74 -25.33 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 S 2.78 55.91 6.05 -107.50 -0.65 55.26 16 13 O -0.96 -23.14 16.58 -57.17 -0.95 -24.09 16 14 O -1.00 -21.29 17.21 -57.17 -0.98 -22.28 16 15 N -1.13 -17.26 6.05 -10.62 -0.06 -17.32 16 16 C 0.14 1.98 6.26 -4.05 -0.03 1.95 16 17 C 0.02 0.22 3.14 -71.42 -0.22 -0.01 16 18 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 19 C -0.14 -1.31 8.02 -26.13 -0.21 -1.52 16 20 C 0.00 -0.04 7.70 -7.47 -0.06 -0.10 16 21 N -0.47 -5.11 6.52 -244.56 -1.59 -6.70 16 22 C -0.01 -0.12 9.69 60.06 0.58 0.46 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.78 7.79 -51.93 -0.40 0.38 16 25 H 0.07 1.10 7.94 -51.93 -0.41 0.69 16 26 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 27 H 0.03 0.88 7.96 -51.93 -0.41 0.47 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 29 H 0.40 5.24 7.15 -34.47 -0.25 5.00 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.32 7.75 -51.93 -0.40 0.92 16 32 H 0.10 1.02 8.12 -51.93 -0.42 0.59 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.50 7.54 -51.93 -0.39 0.11 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.64 6.64 -51.93 -0.34 0.29 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.28 7.52 -51.93 -0.39 -0.11 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -33.81 325.65 -9.67 -43.48 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.89 Total: 0.31 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 0.24 Total: -3.81 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -1.32 Total: -70.76 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -1.93 Total: -46.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 55.91 SS G_CDS: -0.65 Total: 55.26 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.81 -9.67 -43.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921415298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.247 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds