Wall clock time and date at job start Mon Mar 30 2020 02:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.81398 * 102.99935 * 2 1 4 4 C 1.53785 * 113.61333 * 184.99706 * 3 2 1 5 5 C 1.53782 * 87.08037 * 220.01927 * 4 3 2 6 6 N 1.46504 * 113.61490 * 139.98606 * 5 4 3 7 7 C 1.39673 * 119.99962 * 154.99922 * 6 5 4 8 8 C 1.38913 * 120.07019 * 179.97438 * 7 6 5 9 9 C 1.38106 * 119.92415 * 179.97438 * 8 7 6 10 10 C 1.38285 * 120.07208 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.92419 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47064 * 89.99659 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.38286 * 120.15383 * 0.26802 * 10 9 8 21 21 C 1.38108 * 120.06868 * 359.45265 * 20 10 9 22 22 C 1.53776 * 87.08161 * 25.43457 * 5 4 3 23 23 H 1.08997 * 109.47643 * 300.00078 * 1 2 3 24 24 H 1.09005 * 109.47173 * 60.00595 * 1 2 3 25 25 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.08994 * 112.91207 * 316.24872 * 3 2 1 27 27 H 1.09005 * 113.61420 * 105.47347 * 4 3 2 28 28 H 1.08989 * 113.61779 * 334.56862 * 4 3 2 29 29 H 1.09004 * 113.61628 * 270.80077 * 5 4 3 30 30 H 0.97001 * 119.99392 * 335.00024 * 6 5 4 31 31 H 1.08000 * 120.03949 * 0.02562 * 8 7 6 32 32 H 1.07993 * 119.96110 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.47152 * 329.99751 * 11 10 9 34 34 H 1.09001 * 109.46980 * 209.99852 * 11 10 9 35 35 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 36 36 H 1.07999 * 119.96544 * 179.70952 * 20 10 9 37 37 H 1.08005 * 120.03586 * 180.27157 * 21 20 10 38 38 H 1.09001 * 113.61549 * 89.11669 * 22 5 4 39 39 H 1.09007 * 113.61496 * 220.01861 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7675 0.0000 4 6 3.7283 2.0520 -0.1227 5 6 3.5205 3.1738 0.9084 6 7 4.5999 3.2723 1.8940 7 6 4.8483 4.4862 2.5387 8 6 5.8711 4.5811 3.4739 9 6 6.1144 5.7830 4.1092 10 6 5.3409 6.8910 3.8155 11 6 5.6089 8.2007 4.5112 12 6 6.6072 8.9986 3.7124 13 1 7.0071 8.5977 2.7929 14 6 7.0090 10.2411 4.1551 15 7 6.5216 10.7295 5.2747 16 14 8.2458 11.2303 3.1647 17 1 7.6985 11.4923 1.8093 18 1 8.5100 12.5209 3.8502 19 1 9.5125 10.4642 3.0475 20 6 4.3180 6.7985 2.8896 21 6 4.0730 5.6011 2.2464 22 6 2.3007 2.3815 1.4077 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.6108 2.3441 -0.6943 27 1 4.0256 2.4134 -1.1072 28 1 4.3571 1.2382 0.2381 29 1 3.2656 4.1352 0.4624 30 1 5.1420 2.4944 2.0988 31 1 6.4759 3.7162 3.7033 32 1 6.9097 5.8576 4.8360 33 1 6.0104 8.0082 5.5061 34 1 4.6793 8.7634 4.5971 35 1 6.8046 11.6034 5.5863 36 1 3.7127 7.6645 2.6660 37 1 3.2768 5.5305 1.5201 38 1 2.5393 1.6578 2.1871 39 1 1.4455 3.0090 1.6588 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926892921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:38 Heat of formation + Delta-G solvation = 21.373634 kcal Electronic energy + Delta-G solvation = -18132.175305 eV Core-core repulsion = 15358.236665 eV Total energy + Delta-G solvation = -2773.938640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68484 -39.39808 -35.95448 -34.57520 -31.69707 -31.59565 -29.79111 -28.16005 -26.69030 -25.90506 -24.53143 -23.37849 -21.59395 -20.65029 -18.49029 -18.30794 -17.71330 -16.77683 -16.48645 -16.33022 -15.78350 -15.23890 -14.81858 -14.63841 -14.48296 -14.38762 -14.11964 -14.08711 -13.70228 -13.48226 -13.44008 -13.18788 -13.01360 -12.57136 -12.46612 -12.27607 -11.91876 -11.74467 -11.54951 -11.48293 -11.32426 -10.80437 -10.57114 -10.49463 -9.66800 -8.67746 -8.28510 -7.93484 -6.29369 0.68974 0.78074 0.89663 1.40119 1.43179 1.51441 1.64542 2.42062 2.64493 3.13400 3.15085 3.43661 3.51269 3.82850 3.88352 4.14956 4.22639 4.34015 4.35514 4.45618 4.54745 4.68754 4.73665 4.79003 4.79480 4.89126 4.94180 4.96044 5.01418 5.20663 5.30256 5.39718 5.41362 5.57059 5.71727 5.82789 6.06353 6.25054 6.26292 6.61134 6.83917 6.97058 7.38804 8.92637 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.044256 B = 0.002727 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.532571 B =10266.301877 C =10316.429242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.299 6.299 3 C -0.069 4.069 4 C -0.111 4.111 5 C 0.134 3.866 6 N -0.730 5.730 7 C 0.198 3.802 8 C -0.191 4.191 9 C -0.091 4.091 10 C -0.123 4.123 11 C 0.063 3.937 12 C -0.526 4.526 13 H 0.053 0.947 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.268 1.268 20 C -0.090 4.090 21 C -0.192 4.192 22 C -0.140 4.140 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.405 0.595 31 H 0.137 0.863 32 H 0.109 0.891 33 H -0.004 1.004 34 H -0.003 1.003 35 H 0.265 0.735 36 H 0.109 0.891 37 H 0.138 0.862 38 H 0.088 0.912 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.663 -21.548 -12.320 27.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.071 6.071 3 C -0.198 4.198 4 C -0.151 4.151 5 C 0.026 3.974 6 N -0.361 5.361 7 C 0.097 3.903 8 C -0.213 4.213 9 C -0.110 4.110 10 C -0.125 4.125 11 C 0.026 3.974 12 C -0.564 4.564 13 H 0.071 0.929 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.109 4.109 21 C -0.215 4.215 22 C -0.181 4.181 23 H 0.100 0.900 24 H 0.105 0.895 25 H 0.126 0.874 26 H 0.138 0.862 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.241 0.759 31 H 0.155 0.845 32 H 0.127 0.873 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.128 0.872 37 H 0.156 0.844 38 H 0.107 0.893 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.150 -22.291 -12.352 27.432 hybrid contribution -0.046 1.661 0.143 1.668 sum -10.197 -20.630 -12.210 26.051 Atomic orbital electron populations 1.23397 0.91829 1.07191 1.05699 1.86991 1.10288 1.12047 1.97769 1.24457 1.00969 0.93074 1.01276 1.23166 0.93373 0.97972 1.00572 1.22382 0.87185 0.98538 0.89321 1.44445 1.37810 1.08937 1.44874 1.17691 0.93585 0.86877 0.92193 1.20671 1.01215 0.98228 1.01205 1.20829 0.98332 0.92400 0.99391 1.20137 0.97055 0.95754 0.99535 1.17981 0.95212 0.90037 0.94158 1.21422 1.24834 1.02057 1.08051 0.92907 1.25961 0.98647 0.98835 0.96240 1.70084 1.45363 1.18884 1.22950 0.85507 0.79195 0.77620 0.78773 1.19234 1.20564 1.19314 1.20845 0.96941 0.97419 0.95699 1.20714 1.03793 0.91973 1.04976 1.23842 0.99344 0.99448 0.95492 0.89997 0.89496 0.87414 0.86237 0.88959 0.88992 0.87153 0.75900 0.84480 0.87302 0.98518 0.98450 0.92669 0.87243 0.84394 0.89321 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.76 113.37 1.22 0.10 16 2 S -0.30 -4.60 22.17 -56.49 -1.25 -5.85 16 3 C -0.07 -0.89 4.28 31.12 0.13 -0.76 16 4 C -0.11 -1.49 7.42 31.12 0.23 -1.25 16 5 C 0.13 2.18 4.05 45.52 0.18 2.36 16 6 N -0.73 -15.10 5.53 -316.47 -1.75 -16.85 16 7 C 0.20 5.76 6.65 38.21 0.25 6.02 16 8 C -0.19 -6.13 9.90 22.40 0.22 -5.91 16 9 C -0.09 -3.67 9.69 22.25 0.22 -3.45 16 10 C -0.12 -5.66 5.07 -19.84 -0.10 -5.76 16 11 C 0.06 3.52 5.10 29.10 0.15 3.67 16 12 C -0.53 -31.02 9.09 25.60 0.23 -30.79 16 13 H 0.05 3.07 7.74 -2.91 -0.02 3.04 16 14 C 0.00 0.05 5.46 84.66 0.46 0.51 16 15 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 16 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 C -0.09 -3.62 9.69 22.25 0.22 -3.40 16 21 C -0.19 -6.10 9.26 22.40 0.21 -5.89 16 22 C -0.14 -2.08 7.47 31.12 0.23 -1.84 16 23 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.09 1.29 8.08 -2.39 -0.02 1.27 16 29 H 0.11 1.82 6.14 -2.38 -0.01 1.81 16 30 H 0.40 7.10 8.74 -92.71 -0.81 6.29 16 31 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 32 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.00 -0.21 8.08 -2.39 -0.02 -0.23 16 34 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16 35 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 37 H 0.14 3.50 6.05 -2.91 -0.02 3.48 16 38 H 0.09 1.50 8.10 -2.39 -0.02 1.48 16 39 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -67.93 338.08 3.39 -64.54 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.22 Total: 14.65 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 3.86 Total: -46.40 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.47 Total: -74.21 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -1.25 Total: -5.85 kcal Total: -67.93 3.39 -64.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926892921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.914 kcal (2) G-P(sol) polarization free energy of solvation -67.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds