Wall clock time and date at job start Mon Mar 30 2020 02:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 N 1.49353 * 108.33310 * 2 1 4 4 O 1.42094 * 114.64958 * 121.10724 * 2 1 3 5 5 N 1.65604 * 108.33183 * 242.21202 * 2 1 3 6 6 C 1.47075 * 120.88040 * 180.02562 * 5 2 1 7 7 C 1.53240 * 108.68269 * 128.91037 * 6 5 2 8 8 N 1.46903 * 109.33777 * 53.73397 * 7 6 5 9 9 C 1.46897 * 110.99849 * 172.74346 * 8 7 6 10 10 C 1.52994 * 109.47080 * 76.06954 * 9 8 7 11 11 H 1.09002 * 109.47430 * 55.16572 * 10 9 8 12 12 O 1.42899 * 109.47255 * 295.16385 * 10 9 8 13 13 C 1.50703 * 109.47354 * 175.16823 * 10 9 8 14 14 H 1.08006 * 119.99773 * 0.02562 * 13 10 9 15 15 C 1.37872 * 120.00496 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99873 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00426 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47422 * 59.99613 * 17 15 13 19 19 H 1.48503 * 109.47368 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46953 * 299.99741 * 17 15 13 21 21 C 1.46893 * 111.26869 * 296.89601 * 8 7 6 22 22 C 1.47146 * 120.92484 * 359.75476 * 5 2 1 23 23 H 1.08997 * 109.47008 * 177.78609 * 1 2 3 24 24 H 1.08994 * 109.47108 * 297.79086 * 1 2 3 25 25 H 1.08998 * 109.47070 * 57.78766 * 1 2 3 26 26 H 0.97008 * 119.99845 * 304.93542 * 3 2 1 27 27 H 1.09006 * 109.63149 * 9.10761 * 6 5 2 28 28 H 1.09000 * 109.63246 * 248.72272 * 6 5 2 29 29 H 1.09008 * 109.49223 * 173.69042 * 7 6 5 30 30 H 1.08996 * 109.49764 * 293.77580 * 7 6 5 31 31 H 1.09000 * 109.47283 * 196.07203 * 9 8 7 32 32 H 1.08999 * 109.47361 * 316.06992 * 9 8 7 33 33 H 0.96694 * 114.00158 * 300.00220 * 12 10 9 34 34 H 0.96998 * 120.00572 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.49304 * 183.06366 * 21 8 7 36 36 H 1.09005 * 109.49183 * 303.14045 * 21 8 7 37 37 H 1.08996 * 109.46307 * 111.38301 * 22 5 2 38 38 H 1.09000 * 109.80390 * 350.98470 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 7 2.2838 1.4177 0.0000 4 8 2.4067 -0.6672 1.1057 5 7 2.3349 -0.7329 -1.3907 6 6 3.7705 -0.8823 -1.6731 7 6 4.0511 -2.3463 -2.0284 8 7 3.1574 -2.7625 -3.1175 9 6 3.5095 -4.1030 -3.6043 10 6 3.0163 -5.1535 -2.6073 11 1 1.9474 -5.0215 -2.4394 12 8 3.7151 -5.0013 -1.3702 13 6 3.2713 -6.5313 -3.1620 14 1 3.7389 -6.6462 -4.1288 15 6 2.9077 -7.6452 -2.4353 16 7 2.3388 -7.5053 -1.2579 17 14 3.2232 -9.3530 -3.1231 18 1 4.6793 -9.5334 -3.3518 19 1 2.7445 -10.3727 -2.1554 20 1 2.4970 -9.5107 -4.4088 21 6 1.7494 -2.7061 -2.7024 22 6 1.3745 -1.2574 -2.3745 23 1 -0.3633 -1.0269 -0.0397 24 1 -0.3633 0.4791 0.9091 25 1 -0.3633 0.5478 -0.8695 26 1 1.9797 2.0294 -0.6887 27 1 4.3482 -0.6022 -0.7922 28 1 4.0475 -0.2426 -2.5111 29 1 5.0878 -2.4507 -2.3487 30 1 3.8752 -2.9730 -1.1541 31 1 3.0398 -4.2727 -4.5731 32 1 4.5920 -4.1796 -3.7069 33 1 4.6735 -5.1061 -1.4443 34 1 2.0834 -8.2889 -0.7464 35 1 1.1168 -3.0714 -3.5114 36 1 1.6056 -3.3278 -1.8187 37 1 1.4175 -0.6541 -3.2813 38 1 0.3668 -1.2249 -1.9604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931611061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:51 Heat of formation + Delta-G solvation = -29.153168 kcal Electronic energy + Delta-G solvation = -20975.628474 eV Core-core repulsion = 17788.649564 eV Total energy + Delta-G solvation = -3186.978910 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.89758 -36.17410 -35.99072 -33.52923 -32.19808 -32.12890 -31.31709 -29.26881 -28.74359 -26.13705 -23.68864 -23.48580 -21.23813 -19.82908 -18.50279 -17.61007 -17.02511 -16.36381 -15.50254 -14.93517 -14.75598 -14.65165 -14.54589 -14.35139 -14.10066 -13.58538 -13.42570 -13.37551 -13.12266 -12.33124 -12.07558 -11.94468 -11.66993 -11.39135 -11.20351 -11.01406 -10.95427 -10.74277 -10.66002 -10.44320 -10.07007 -9.83069 -9.51561 -9.37189 -8.86719 -8.63055 -8.61113 -7.25181 -6.05991 -4.25813 0.04066 2.78481 3.24305 3.30384 3.31676 3.65116 4.09836 4.31830 4.41601 4.53469 4.78073 4.82521 5.17761 5.19662 5.27405 5.45948 5.53008 5.58670 5.65203 5.81542 5.95779 6.04391 6.15065 6.20761 6.28055 6.47338 6.56765 6.69702 6.83113 7.23884 7.42078 7.51826 7.69592 7.80125 8.13110 8.76562 9.27111 9.50765 10.96887 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033354 B = 0.004648 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.279701 B = 6023.083454 C = 6244.124253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.668 4.668 2 S 2.510 3.490 3 N -1.244 6.244 4 O -0.928 6.928 5 N -1.004 6.004 6 C 0.144 3.856 7 C 0.027 3.973 8 N -0.533 5.533 9 C 0.026 3.974 10 C 0.197 3.803 11 H 0.060 0.940 12 O -0.562 6.562 13 C -0.574 4.574 14 H 0.056 0.944 15 C 0.080 3.920 16 N -0.860 5.860 17 Si 0.889 3.111 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.036 3.964 22 C 0.114 3.886 23 H 0.120 0.880 24 H 0.130 0.870 25 H 0.122 0.878 26 H 0.379 0.621 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.345 0.655 34 H 0.261 0.739 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 14.642 -2.910 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.822 4.822 2 S 2.601 3.399 3 N -1.063 6.063 4 O -0.908 6.908 5 N -0.838 5.838 6 C 0.018 3.982 7 C -0.103 4.103 8 N -0.257 5.257 9 C -0.101 4.101 10 C 0.138 3.862 11 H 0.077 0.923 12 O -0.365 6.365 13 C -0.613 4.613 14 H 0.074 0.926 15 C -0.126 4.126 16 N -0.495 5.495 17 Si 0.717 3.283 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.094 4.094 22 C -0.013 4.013 23 H 0.139 0.861 24 H 0.149 0.851 25 H 0.141 0.859 26 H 0.200 0.800 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.188 0.812 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.718 14.744 -1.640 15.294 hybrid contribution -0.499 -1.782 -0.955 2.083 sum -4.217 12.962 -2.595 13.875 Atomic orbital electron populations 1.30631 1.29666 1.10842 1.11053 1.10390 0.77288 0.77168 0.75079 1.72941 1.64226 1.18066 1.51029 1.93537 1.72659 1.75608 1.49008 1.58064 1.13141 1.76578 1.36020 1.21414 0.78629 0.97500 1.00652 1.22687 0.96760 0.94954 0.95894 1.62265 1.02044 1.27263 1.34104 1.23029 1.00490 0.86965 0.99629 1.20038 0.93291 0.91752 0.81089 0.92285 1.86556 1.20991 1.93756 1.35215 1.21595 1.43219 0.91632 1.04833 0.92624 1.25043 0.93915 0.99178 0.94500 1.70055 1.38543 1.29798 1.11150 0.86732 0.78776 0.83993 0.78834 1.20129 1.21230 1.20162 1.22406 0.91315 0.94760 1.00939 1.21722 0.90454 0.96172 0.92937 0.86071 0.85135 0.85895 0.79957 0.90254 0.91298 0.90734 0.90525 0.91115 0.91856 0.81151 0.92904 0.90213 0.92661 0.90714 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -5.17 9.27 101.05 0.94 -4.23 16 2 S 2.51 30.33 5.36 -107.50 -0.58 29.76 16 3 N -1.24 -15.69 14.07 60.35 0.85 -14.84 16 4 O -0.93 -16.90 18.13 -35.23 -0.64 -17.54 16 5 N -1.00 -12.27 3.40 -113.21 -0.38 -12.66 16 6 C 0.14 1.94 6.72 -3.60 -0.02 1.92 16 7 C 0.03 0.43 5.08 -3.70 -0.02 0.41 16 8 N -0.53 -8.79 4.83 -234.35 -1.13 -9.93 16 9 C 0.03 0.51 5.21 -3.83 -0.02 0.49 16 10 C 0.20 4.65 2.27 -27.88 -0.06 4.59 16 11 H 0.06 1.53 6.17 -51.93 -0.32 1.21 16 12 O -0.56 -13.71 9.92 -35.23 -0.35 -14.06 16 13 C -0.57 -15.18 8.76 -34.44 -0.30 -15.48 16 14 H 0.06 1.43 7.74 -52.48 -0.41 1.03 16 15 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 16 N -0.86 -24.98 12.84 55.43 0.71 -24.27 16 17 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.04 0.55 4.57 -3.73 -0.02 0.53 16 22 C 0.11 1.24 6.63 -3.59 -0.02 1.22 16 23 H 0.12 0.91 7.65 -51.93 -0.40 0.51 16 24 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.12 0.59 8.02 -51.93 -0.42 0.18 16 26 H 0.38 3.62 8.92 -21.58 -0.19 3.43 16 27 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.11 7.93 -51.92 -0.41 0.70 16 30 H 0.08 1.48 5.82 -51.93 -0.30 1.18 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.06 1.19 7.85 -51.93 -0.41 0.78 16 33 H 0.34 7.63 9.04 45.56 0.41 8.04 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 36 H 0.06 1.03 6.58 -51.93 -0.34 0.69 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.59 5.73 -51.93 -0.30 0.29 16 LS Contribution 311.68 15.07 4.70 4.70 Total: -1.00 -35.05 311.68 -6.21 -41.26 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -4.74 Total: 10.27 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 0.37 Total: -8.47 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.04 Total: -61.69 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.99 Total: -31.60 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 30.33 SS G_CDS: -0.58 Total: 29.76 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.05 -6.21 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931611061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.106 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds