Wall clock time and date at job start Mon Mar 30 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 N 1.49353 * 108.33310 * 2 1 4 4 O 1.42094 * 114.64958 * 121.10724 * 2 1 3 5 5 N 1.65604 * 108.33183 * 242.21202 * 2 1 3 6 6 C 1.47075 * 120.88040 * 180.02562 * 5 2 1 7 7 C 1.53240 * 108.68269 * 128.91037 * 6 5 2 8 8 N 1.46903 * 109.33777 * 53.73397 * 7 6 5 9 9 C 1.46897 * 110.99849 * 172.74346 * 8 7 6 10 10 C 1.52994 * 109.47080 * 76.06954 * 9 8 7 11 11 H 1.09002 * 109.47430 * 55.16572 * 10 9 8 12 12 O 1.42899 * 109.47255 * 295.16385 * 10 9 8 13 13 C 1.50703 * 109.47354 * 175.16823 * 10 9 8 14 14 H 1.08006 * 119.99773 * 0.02562 * 13 10 9 15 15 C 1.37872 * 120.00496 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99873 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 120.00426 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47422 * 59.99613 * 17 15 13 19 19 H 1.48503 * 109.47368 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46953 * 299.99741 * 17 15 13 21 21 C 1.46893 * 111.26869 * 296.89601 * 8 7 6 22 22 C 1.47146 * 120.92484 * 359.75476 * 5 2 1 23 23 H 1.08997 * 109.47008 * 177.78609 * 1 2 3 24 24 H 1.08994 * 109.47108 * 297.79086 * 1 2 3 25 25 H 1.08998 * 109.47070 * 57.78766 * 1 2 3 26 26 H 0.97008 * 119.99845 * 304.93542 * 3 2 1 27 27 H 1.09006 * 109.63149 * 9.10761 * 6 5 2 28 28 H 1.09000 * 109.63246 * 248.72272 * 6 5 2 29 29 H 1.09008 * 109.49223 * 173.69042 * 7 6 5 30 30 H 1.08996 * 109.49764 * 293.77580 * 7 6 5 31 31 H 1.09000 * 109.47283 * 196.07203 * 9 8 7 32 32 H 1.08999 * 109.47361 * 316.06992 * 9 8 7 33 33 H 0.96694 * 114.00158 * 300.00220 * 12 10 9 34 34 H 0.96998 * 120.00572 * 180.02562 * 16 15 13 35 35 H 1.09000 * 109.49304 * 183.06366 * 21 8 7 36 36 H 1.09005 * 109.49183 * 303.14045 * 21 8 7 37 37 H 1.08996 * 109.46307 * 111.38301 * 22 5 2 38 38 H 1.09000 * 109.80390 * 350.98470 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 7 2.2838 1.4177 0.0000 4 8 2.4067 -0.6672 1.1057 5 7 2.3349 -0.7329 -1.3907 6 6 3.7705 -0.8823 -1.6731 7 6 4.0511 -2.3463 -2.0284 8 7 3.1574 -2.7625 -3.1175 9 6 3.5095 -4.1030 -3.6043 10 6 3.0163 -5.1535 -2.6073 11 1 1.9474 -5.0215 -2.4394 12 8 3.7151 -5.0013 -1.3702 13 6 3.2713 -6.5313 -3.1620 14 1 3.7389 -6.6462 -4.1288 15 6 2.9077 -7.6452 -2.4353 16 7 2.3388 -7.5053 -1.2579 17 14 3.2232 -9.3530 -3.1231 18 1 4.6793 -9.5334 -3.3518 19 1 2.7445 -10.3727 -2.1554 20 1 2.4970 -9.5107 -4.4088 21 6 1.7494 -2.7061 -2.7024 22 6 1.3745 -1.2574 -2.3745 23 1 -0.3633 -1.0269 -0.0397 24 1 -0.3633 0.4791 0.9091 25 1 -0.3633 0.5478 -0.8695 26 1 1.9797 2.0294 -0.6887 27 1 4.3482 -0.6022 -0.7922 28 1 4.0475 -0.2426 -2.5111 29 1 5.0878 -2.4507 -2.3487 30 1 3.8752 -2.9730 -1.1541 31 1 3.0398 -4.2727 -4.5731 32 1 4.5920 -4.1796 -3.7069 33 1 4.6735 -5.1061 -1.4443 34 1 2.0834 -8.2889 -0.7464 35 1 1.1168 -3.0714 -3.5114 36 1 1.6056 -3.3278 -1.8187 37 1 1.4175 -0.6541 -3.2813 38 1 0.3668 -1.2249 -1.9604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931611061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:50 Heat of formation + Delta-G solvation = -61.737562 kcal Electronic energy + Delta-G solvation = -20977.041439 eV Core-core repulsion = 17788.649564 eV Total energy + Delta-G solvation = -3188.391875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22917 -37.59788 -37.33096 -34.97835 -34.24802 -33.07475 -32.38613 -30.42771 -30.01398 -27.74889 -25.29460 -24.63984 -22.80495 -21.13677 -19.52942 -19.14795 -18.52038 -17.33680 -16.71347 -16.64400 -16.44005 -16.14170 -15.83607 -15.56319 -15.38878 -14.98298 -14.81604 -14.17385 -13.97593 -13.94448 -13.29045 -13.16752 -13.05791 -12.90841 -12.79987 -12.68335 -12.53472 -12.24399 -12.02103 -11.85463 -11.71255 -11.32655 -10.76046 -10.70998 -10.53042 -10.24304 -9.86531 -8.83638 -8.12553 -6.41096 -0.84764 1.38958 1.39839 1.48001 1.87624 2.36943 2.80522 3.08611 3.13218 3.26268 3.61834 4.06750 4.09527 4.15946 4.20540 4.22498 4.38423 4.47297 4.50645 4.60532 4.75288 4.75637 4.80874 4.91907 5.09868 5.14419 5.20924 5.34872 5.55222 5.58463 5.68328 5.95427 6.22354 6.27540 6.54028 6.71925 7.30343 7.49068 8.87967 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033354 B = 0.004648 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.279701 B = 6023.083454 C = 6244.124253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.512 3.488 3 N -1.273 6.273 4 O -1.001 7.001 5 N -1.004 6.004 6 C 0.147 3.853 7 C 0.027 3.973 8 N -0.519 5.519 9 C 0.041 3.959 10 C 0.198 3.802 11 H 0.030 0.970 12 O -0.576 6.576 13 C -0.586 4.586 14 H 0.061 0.939 15 C 0.026 3.974 16 N -0.902 5.902 17 Si 0.957 3.043 18 H -0.269 1.269 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.030 3.970 22 C 0.116 3.884 23 H 0.129 0.871 24 H 0.144 0.856 25 H 0.166 0.834 26 H 0.393 0.607 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.351 0.649 34 H 0.259 0.741 35 H 0.086 0.914 36 H 0.012 0.988 37 H 0.104 0.896 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 15.915 -4.762 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.608 3.392 3 N -1.093 6.093 4 O -0.982 6.982 5 N -0.837 5.837 6 C 0.021 3.979 7 C -0.102 4.102 8 N -0.243 5.243 9 C -0.087 4.087 10 C 0.140 3.860 11 H 0.048 0.952 12 O -0.380 6.380 13 C -0.624 4.624 14 H 0.079 0.921 15 C -0.176 4.176 16 N -0.539 5.539 17 Si 0.782 3.218 18 H -0.194 1.194 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.100 4.100 22 C -0.010 4.010 23 H 0.148 0.852 24 H 0.162 0.838 25 H 0.184 0.816 26 H 0.216 0.784 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.196 0.804 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.031 0.969 37 H 0.122 0.878 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.812 16.045 -3.524 17.118 hybrid contribution -0.245 -2.158 -0.385 2.206 sum -5.058 13.887 -3.909 15.288 Atomic orbital electron populations 1.30410 1.23353 1.12481 1.13991 1.09804 0.79311 0.76234 0.73879 1.72912 1.67057 1.18146 1.51202 1.93460 1.75911 1.76829 1.52029 1.58103 1.12821 1.76602 1.36221 1.21323 0.79747 0.95734 1.01135 1.22664 0.97287 0.96189 0.94109 1.62347 1.02913 1.24920 1.34073 1.22760 1.00558 0.87076 0.98348 1.19967 0.91989 0.92385 0.81678 0.95192 1.86537 1.21587 1.93887 1.35995 1.22065 1.42364 0.93081 1.04933 0.92113 1.25884 0.93714 1.03298 0.94703 1.70208 1.40285 1.30687 1.12738 0.85658 0.78891 0.79036 0.78250 1.19388 1.21404 1.19083 1.22529 0.90646 0.97529 0.99331 1.21927 0.91732 0.93108 0.94215 0.85206 0.83754 0.81561 0.78374 0.91150 0.88882 0.89893 0.94458 0.90656 0.91406 0.80405 0.93182 0.89523 0.96941 0.87752 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -7.36 9.27 113.37 1.05 -6.31 16 2 S 2.51 57.75 5.36 -56.49 -0.30 57.45 16 3 N -1.27 -30.42 14.07 37.02 0.52 -29.90 16 4 O -1.00 -37.73 18.13 -148.98 -2.70 -40.43 16 5 N -1.00 -23.00 3.40 -512.09 -1.74 -24.74 16 6 C 0.15 3.86 6.72 86.35 0.58 4.44 16 7 C 0.03 0.88 5.08 86.38 0.44 1.32 16 8 N -0.52 -16.81 4.83 -895.35 -4.32 -21.13 16 9 C 0.04 1.56 5.21 86.30 0.45 2.01 16 10 C 0.20 9.64 2.27 29.85 0.07 9.71 16 11 H 0.03 1.64 6.17 -2.39 -0.01 1.62 16 12 O -0.58 -29.35 9.92 -148.98 -1.48 -30.83 16 13 C -0.59 -31.27 8.76 25.60 0.22 -31.05 16 14 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 15 C 0.03 1.45 5.40 84.65 0.46 1.91 16 16 N -0.90 -53.79 12.84 21.45 0.28 -53.51 16 17 Si 0.96 42.88 29.54 68.60 2.03 44.90 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 C 0.03 0.89 4.57 86.37 0.40 1.28 16 22 C 0.12 2.19 6.63 86.32 0.57 2.76 16 23 H 0.13 1.44 7.65 -2.39 -0.02 1.42 16 24 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.17 0.56 8.02 -2.39 -0.02 0.54 16 26 H 0.39 6.62 8.92 -104.94 -0.94 5.69 16 27 H 0.07 1.98 7.93 -2.38 -0.02 1.96 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.08 2.47 7.93 -2.38 -0.02 2.45 16 30 H 0.04 1.52 5.82 -2.39 -0.01 1.50 16 31 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.07 2.51 7.85 -2.39 -0.02 2.49 16 33 H 0.35 16.26 9.04 -74.06 -0.67 15.59 16 34 H 0.26 14.80 8.31 -92.71 -0.77 14.02 16 35 H 0.09 2.44 8.11 -2.39 -0.02 2.42 16 36 H 0.01 0.48 6.58 -2.38 -0.02 0.46 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 1.28 5.73 -2.39 -0.01 1.27 16 Total: -1.00 -79.75 311.68 -4.01 -83.77 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.53 Total: 28.36 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 4.24 Total: -13.93 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -5.27 Total: -129.29 kcal Atomic # 8 Polarization: -67.08 SS G_CDS: -4.18 Total: -71.26 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 57.75 SS G_CDS: -0.30 Total: 57.45 kcal Total: -79.75 -4.01 -83.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931611061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.031 kcal (2) G-P(sol) polarization free energy of solvation -79.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds