Wall clock time and date at job start Mon Mar 30 2020 02:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34810 * 126.59627 * 2 1 4 4 C 1.36594 * 106.84141 * 180.02562 * 3 2 1 5 5 C 1.47522 * 125.76623 * 180.02562 * 4 3 2 6 6 O 1.21595 * 120.00644 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99274 * 179.72193 * 5 4 3 8 8 C 1.46500 * 119.99606 * 180.27578 * 7 5 4 9 9 H 1.09006 * 115.51834 * 350.58426 * 8 7 5 10 10 C 1.52999 * 117.44366 * 205.16999 * 8 7 5 11 11 H 1.09000 * 119.53849 * 4.11735 * 10 8 7 12 12 C 1.54386 * 118.12362 * 159.21228 * 10 8 7 13 13 N 1.48142 * 104.61785 * 87.19526 * 12 10 8 14 14 C 1.36942 * 127.84376 * 140.41340 * 13 12 10 15 15 H 1.07989 * 120.00012 * 195.57037 * 14 13 12 16 16 C 1.38810 * 119.99397 * 15.57087 * 14 13 12 17 17 N 1.31626 * 120.00355 * 9.10017 * 16 14 13 18 18 Si 1.86798 * 119.99820 * 189.09648 * 16 14 13 19 19 H 1.48506 * 109.47185 * 60.00033 * 18 16 14 20 20 H 1.48496 * 109.47596 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47398 * 300.00247 * 18 16 14 22 22 C 1.48145 * 104.32006 * 320.41263 * 13 12 10 23 23 C 1.52997 * 117.44290 * 136.00401 * 8 7 5 24 24 H 1.09008 * 119.53910 * 355.87452 * 23 8 7 25 25 N 1.34396 * 108.45739 * 0.26535 * 4 3 2 26 26 N 1.28759 * 109.52172 * 359.54666 * 25 4 3 27 27 H 1.08997 * 109.47064 * 90.00029 * 1 2 3 28 28 H 1.08999 * 109.46906 * 209.99827 * 1 2 3 29 29 H 1.08995 * 109.47215 * 330.00026 * 1 2 3 30 30 H 1.08011 * 126.57610 * 0.03553 * 3 2 1 31 31 H 0.96992 * 120.00410 * 0.28080 * 7 5 4 32 32 H 1.09011 * 110.40400 * 205.97324 * 12 10 8 33 33 H 1.08993 * 110.41145 * 328.28537 * 12 10 8 34 34 H 0.97002 * 119.99637 * 180.02562 * 17 16 14 35 35 H 1.09004 * 110.40614 * 158.37749 * 22 13 12 36 36 H 1.09008 * 110.40765 * 280.79857 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2688 1.0823 0.0000 4 6 3.5543 0.6206 -0.0006 5 6 4.7704 1.4558 -0.0003 6 8 4.6756 2.6680 0.0011 7 7 5.9866 0.8749 0.0047 8 6 7.1943 1.7042 0.0112 9 1 7.0328 2.7702 -0.1494 10 6 8.4739 1.0909 -0.5610 11 1 8.4394 0.0992 -1.0121 12 6 9.5977 2.0460 -1.0174 13 7 10.3986 2.2917 0.2044 14 6 11.7606 2.3864 0.3112 15 1 12.2323 2.3172 1.2802 16 6 12.5347 2.5714 -0.8260 17 7 11.9576 2.8344 -1.9794 18 14 14.3955 2.4470 -0.7196 19 1 14.7747 1.0923 -0.2439 20 1 14.9850 2.6827 -2.0620 21 1 14.9062 3.4665 0.2317 22 6 9.3918 2.4117 1.2845 23 6 8.3241 1.2971 0.9591 24 1 8.1780 0.4591 1.6408 25 7 3.5239 -0.7230 -0.0068 26 7 2.3009 -1.1257 -0.0006 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.9561 2.1162 0.0005 31 1 6.0623 -0.0920 0.0040 32 1 10.2105 1.5726 -1.7847 33 1 9.1755 2.9787 -1.3912 34 1 12.4986 2.9633 -2.7742 35 1 9.8493 2.2145 2.2541 36 1 8.9375 3.4025 1.2722 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958755756.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:55 Heat of formation + Delta-G solvation = 130.714434 kcal Electronic energy + Delta-G solvation = -20429.508917 eV Core-core repulsion = 17146.311186 eV Total energy + Delta-G solvation = -3283.197731 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.43920 -39.56154 -38.08824 -35.02361 -34.38873 -32.59235 -31.22798 -30.17093 -28.22443 -26.96787 -25.69001 -23.96655 -22.52686 -21.63210 -20.48436 -20.23579 -19.24437 -18.17383 -16.82317 -16.54490 -16.30310 -16.24740 -14.89465 -14.74026 -14.67478 -14.45924 -13.68414 -13.61856 -13.50319 -13.18281 -12.69496 -12.40851 -12.17392 -11.57821 -11.48844 -11.42254 -10.96150 -10.78780 -10.71114 -10.34083 -10.18960 -10.14701 -10.04494 -9.69322 -9.55753 -9.17375 -8.70160 -8.27184 -6.83901 -5.76683 -3.10926 0.85581 1.53031 1.71879 3.10364 3.22422 3.41760 3.45999 3.47283 3.98918 4.00925 4.39306 4.49130 4.49854 4.52047 4.72255 4.78857 5.06119 5.22933 5.41660 5.45394 5.50290 5.63419 5.78887 5.91352 5.99379 6.19472 6.28187 6.56906 6.72904 6.83699 6.93877 7.38964 7.50187 7.56868 7.74328 7.76236 8.23723 8.23882 9.13905 9.76694 10.53916 11.37655 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.058960 B = 0.002933 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.782032 B = 9545.089014 C = 9587.779667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.366 5.366 3 C 0.093 3.907 4 C -0.097 4.097 5 C 0.606 3.394 6 O -0.538 6.538 7 N -0.681 5.681 8 C 0.092 3.908 9 H 0.134 0.866 10 C -0.179 4.179 11 H 0.102 0.898 12 C 0.185 3.815 13 N -0.593 5.593 14 C -0.227 4.227 15 H 0.077 0.923 16 C -0.006 4.006 17 N -0.915 5.915 18 Si 0.914 3.086 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.158 3.842 23 C -0.184 4.184 24 H 0.108 0.892 25 N -0.204 5.204 26 N -0.067 5.067 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.207 0.793 31 H 0.407 0.593 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.255 0.745 35 H 0.050 0.950 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.541 -5.315 3.593 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.151 5.151 3 C -0.064 4.064 4 C -0.236 4.236 5 C 0.390 3.610 6 O -0.414 6.414 7 N -0.328 5.328 8 C -0.013 4.013 9 H 0.152 0.848 10 C -0.200 4.200 11 H 0.120 0.880 12 C 0.059 3.941 13 N -0.316 5.316 14 C -0.355 4.355 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.561 5.561 18 Si 0.744 3.256 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.031 3.969 23 C -0.206 4.206 24 H 0.126 0.874 25 N -0.078 5.078 26 N -0.048 5.048 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.223 0.777 31 H 0.242 0.758 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -23.346 -5.919 3.439 24.329 hybrid contribution 0.604 0.322 -0.020 0.685 sum -22.742 -5.596 3.419 23.669 Atomic orbital electron populations 1.22200 0.72487 1.05807 1.04831 1.50380 1.09160 1.05735 1.49825 1.23396 0.90108 0.95045 0.97813 1.21542 0.94725 0.90335 1.17027 1.16679 0.81581 0.86324 0.76445 1.90815 1.86516 1.13000 1.51044 1.45180 1.04448 1.10453 1.72719 1.21940 0.79248 0.95835 1.04306 0.84835 1.24629 0.96202 1.02113 0.97042 0.87952 1.21070 0.88191 0.93986 0.90822 1.45114 1.01159 1.82610 1.02721 1.18944 0.79499 1.43166 0.93912 0.90561 1.24902 0.98300 1.00975 0.96099 1.69891 1.34092 1.52891 0.99258 0.86180 0.84798 0.77972 0.76680 1.21101 1.21566 1.20978 1.21712 0.88739 0.93496 0.92970 1.25100 0.98703 1.02879 0.93912 0.87425 1.74636 1.12899 1.10382 1.09869 1.82002 0.93474 1.06456 1.22866 0.89160 0.88075 0.88327 0.77664 0.75826 0.89064 0.95525 0.93484 0.93107 0.95089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.22 11.51 59.85 0.69 0.91 16 2 N -0.37 -2.95 4.03 -67.85 -0.27 -3.23 16 3 C 0.09 0.85 11.31 -16.84 -0.19 0.66 16 4 C -0.10 -1.23 6.99 -83.55 -0.58 -1.81 16 5 C 0.61 9.20 7.82 -12.47 -0.10 9.10 16 6 O -0.54 -9.49 16.43 5.28 0.09 -9.41 16 7 N -0.68 -10.30 5.56 -54.85 -0.30 -10.60 16 8 C 0.09 1.62 5.93 -67.93 -0.40 1.22 16 9 H 0.13 2.57 7.40 -51.93 -0.38 2.19 16 10 C -0.18 -3.48 6.97 -89.30 -0.62 -4.10 16 11 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 12 C 0.19 4.52 5.70 -2.41 -0.01 4.51 16 13 N -0.59 -15.39 3.38 -166.70 -0.56 -15.95 16 14 C -0.23 -6.38 10.35 -15.06 -0.16 -6.53 16 15 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 16 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 17 N -0.92 -26.99 10.86 55.49 0.60 -26.39 16 18 Si 0.91 22.07 29.56 -169.99 -5.03 17.04 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.16 3.39 7.10 -0.54 0.00 3.39 16 23 C -0.18 -3.39 7.33 -87.43 -0.64 -4.03 16 24 H 0.11 1.79 8.14 -51.92 -0.42 1.37 16 25 N -0.20 -2.70 12.04 32.84 0.40 -2.31 16 26 N -0.07 -0.79 13.78 60.35 0.83 0.04 16 27 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.21 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.41 5.53 8.51 -40.82 -0.35 5.18 16 32 H 0.09 2.47 6.51 -51.92 -0.34 2.13 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -34.47 315.16 -6.04 -40.51 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.42 Total: 2.49 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.12 Total: 3.06 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.69 Total: -58.43 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.47 -6.04 -40.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958755756.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.220 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds