Wall clock time and date at job start Mon Mar 30 2020 02:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28523 * 124.44168 * 2 1 4 4 C 1.31136 * 109.06033 * 180.02562 * 3 2 1 5 5 C 1.40930 * 105.77366 * 0.02562 * 4 3 2 6 6 C 1.47801 * 127.23512 * 179.97438 * 5 4 3 7 7 O 1.21564 * 119.99819 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00066 * 180.02562 * 6 5 4 9 9 C 1.47868 * 126.94700 * 359.97438 * 8 6 5 10 10 C 1.55476 * 105.17486 * 181.92886 * 9 8 6 11 11 H 1.08999 * 116.04188 * 159.75337 * 10 9 8 12 12 C 1.57433 * 99.68817 * 32.85608 * 10 9 8 13 13 C 1.49296 * 126.94681 * 179.97438 * 8 6 5 14 14 H 1.08997 * 116.14799 * 15.83290 * 13 8 6 15 15 C 1.56020 * 104.09190 * 246.69612 * 13 8 6 16 16 N 1.47873 * 105.10255 * 288.76406 * 15 13 8 17 17 C 1.36938 * 126.94782 * 181.97943 * 16 15 13 18 18 H 1.07999 * 120.00183 * 185.02510 * 17 16 15 19 19 C 1.38814 * 119.99739 * 5.02618 * 17 16 15 20 20 N 1.31627 * 119.99900 * 352.81913 * 19 17 16 21 21 Si 1.86795 * 120.00132 * 173.09983 * 19 17 16 22 22 H 1.48497 * 109.47501 * 94.98491 * 21 19 17 23 23 H 1.48498 * 109.47190 * 214.98689 * 21 19 17 24 24 H 1.48501 * 109.46774 * 334.98463 * 21 19 17 25 25 N 1.28590 * 124.44804 * 180.31248 * 2 1 3 26 26 H 1.09003 * 109.46967 * 89.98051 * 1 2 3 27 27 H 1.09009 * 109.46938 * 209.97302 * 1 2 3 28 28 H 1.08996 * 109.47630 * 329.97579 * 1 2 3 29 29 H 1.07995 * 127.11251 * 179.97438 * 4 3 2 30 30 H 1.09000 * 110.31655 * 300.91399 * 9 8 6 31 31 H 1.09001 * 110.31743 * 62.99395 * 9 8 6 32 32 H 1.09003 * 112.53411 * 191.71205 * 12 10 9 33 33 H 1.09001 * 112.31252 * 64.17284 * 12 10 9 34 34 H 1.08995 * 110.31511 * 169.85824 * 15 13 8 35 35 H 1.08998 * 110.31706 * 47.66801 * 15 13 8 36 36 H 0.97000 * 119.99826 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1918 1.0599 0.0000 4 6 3.4562 0.7121 -0.0006 5 6 3.4659 -0.6972 -0.0015 6 6 4.6487 -1.5834 -0.0029 7 8 5.7664 -1.1053 -0.0039 8 7 4.4881 -2.9215 -0.0043 9 6 3.2089 -3.6632 -0.0040 10 6 3.6091 -5.1648 0.0446 11 1 2.8391 -5.8543 0.3906 12 6 4.9233 -5.0610 0.9051 13 6 5.5659 -3.9546 -0.0063 14 1 6.5643 -3.6078 0.2601 15 6 5.4246 -4.6481 -1.3968 16 7 4.1788 -5.4398 -1.3077 17 6 3.6512 -6.2556 -2.2727 18 1 2.6887 -6.7208 -2.1195 19 6 4.3537 -6.4848 -3.4478 20 7 5.4564 -5.8108 -3.6975 21 14 3.7298 -7.7439 -4.6785 22 1 2.9151 -7.0611 -5.7155 23 1 4.8840 -8.4209 -5.3223 24 1 2.8942 -8.7507 -3.9761 25 7 2.1923 -1.0604 -0.0058 26 1 -0.3633 0.0003 -1.0277 27 1 -0.3633 -0.8903 0.5135 28 1 -0.3634 0.8897 0.5142 29 1 4.3129 1.3696 -0.0011 30 1 2.6189 -3.3996 0.8738 31 1 2.6479 -3.4505 -0.9140 32 1 5.4989 -5.9867 0.9019 33 1 4.7287 -4.7039 1.9164 34 1 6.2765 -5.3026 -1.5815 35 1 5.3424 -3.9007 -2.1859 36 1 5.9474 -5.9712 -4.5185 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032681246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:20 Heat of formation + Delta-G solvation = 146.104659 kcal Electronic energy + Delta-G solvation = -21901.461110 eV Core-core repulsion = 18618.930749 eV Total energy + Delta-G solvation = -3282.530361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.57064 -39.95584 -37.73761 -33.85113 -33.62168 -32.66285 -31.33432 -29.13381 -28.55578 -27.90138 -25.20963 -24.41576 -22.96687 -21.96076 -20.63716 -19.80419 -18.64001 -17.44492 -17.07232 -16.97368 -16.20575 -15.68464 -15.04562 -14.73038 -14.47882 -13.95529 -13.38985 -13.34518 -13.10193 -12.95093 -12.30846 -11.91123 -11.76501 -11.63970 -11.27317 -11.02839 -11.01401 -10.84715 -10.69343 -10.57468 -10.38933 -10.21034 -10.07898 -9.77092 -9.62871 -9.38333 -8.67247 -7.99551 -6.90816 -5.76691 -3.09556 1.46885 2.01719 2.16678 3.30237 3.37633 3.42866 3.45418 3.60071 3.97657 4.43312 4.71472 4.80453 4.95679 5.05189 5.06888 5.21380 5.25089 5.39003 5.58173 5.66004 5.73515 5.78567 5.99030 6.06081 6.24512 6.33717 6.44457 6.52859 6.55240 6.62619 6.75758 7.44524 7.48352 7.72908 8.01086 8.11302 8.15535 8.51720 9.11132 9.72390 10.42161 11.35992 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.020769 B = 0.005381 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.846283 B = 5201.987886 C = 5718.896369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.151 5.151 3 N -0.298 5.298 4 C 0.031 3.969 5 C -0.033 4.033 6 C 0.616 3.384 7 O -0.545 6.545 8 N -0.590 5.590 9 C 0.095 3.905 10 C 0.138 3.862 11 H 0.107 0.893 12 C -0.149 4.149 13 C 0.099 3.901 14 H 0.117 0.883 15 C 0.173 3.827 16 N -0.598 5.598 17 C -0.230 4.230 18 H 0.080 0.920 19 C -0.005 4.005 20 N -0.918 5.918 21 Si 0.910 3.090 22 H -0.291 1.291 23 H -0.290 1.290 24 H -0.280 1.280 25 N -0.241 5.241 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.207 0.793 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.360 8.612 10.057 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.054 5.054 3 N -0.137 5.137 4 C -0.153 4.153 5 C -0.196 4.196 6 C 0.402 3.598 7 O -0.422 6.422 8 N -0.322 5.322 9 C -0.030 4.030 10 C 0.029 3.971 11 H 0.124 0.876 12 C -0.189 4.189 13 C -0.003 4.003 14 H 0.135 0.865 15 C 0.048 3.952 16 N -0.322 5.322 17 C -0.358 4.358 18 H 0.098 0.902 19 C -0.202 4.202 20 N -0.565 5.565 21 Si 0.741 3.259 22 H -0.218 1.218 23 H -0.216 1.216 24 H -0.206 1.206 25 N -0.089 5.089 26 H 0.110 0.890 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.223 0.777 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.080 8.841 9.767 16.000 hybrid contribution 0.432 -0.455 -0.916 1.110 sum -8.648 8.386 8.852 14.949 Atomic orbital electron populations 1.22188 0.70007 1.05917 1.05257 1.48062 1.09135 0.99453 1.48737 1.73947 1.03883 1.15745 1.20158 1.24795 0.94156 0.93770 1.02565 1.23169 0.91424 0.94623 1.10406 1.16204 0.85760 0.80380 0.77488 1.90772 1.23842 1.74716 1.52846 1.49042 1.10180 1.03635 1.69351 1.23197 0.84705 0.94090 1.00988 1.23205 0.94457 0.91999 0.87429 0.87564 1.24201 0.99102 0.98687 0.96912 1.24433 0.91081 0.85227 0.99550 0.86513 1.21947 0.89878 0.93374 0.90004 1.45243 1.24101 1.52180 1.10667 1.19036 1.01643 1.19851 0.95311 0.90179 1.24830 0.97347 0.99870 0.98171 1.69933 1.18187 1.42376 1.25960 0.86133 0.77527 0.81121 0.81158 1.21786 1.21625 1.20563 1.74588 1.03202 1.14889 1.16235 0.88988 0.87661 0.87854 0.77677 0.92484 0.90806 0.89573 0.91624 0.92281 0.93593 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.77 11.55 59.84 0.69 1.46 16 2 N -0.15 -1.99 4.35 -16.64 -0.07 -2.06 16 3 N -0.30 -4.16 12.01 30.90 0.37 -3.79 16 4 C 0.03 0.46 12.04 -16.83 -0.20 0.25 16 5 C -0.03 -0.57 7.05 -82.68 -0.58 -1.15 16 6 C 0.62 12.09 7.90 -12.35 -0.10 11.99 16 7 O -0.54 -11.70 17.30 5.31 0.09 -11.61 16 8 N -0.59 -11.47 2.95 -158.23 -0.47 -11.93 16 9 C 0.10 1.74 4.98 -1.98 -0.01 1.73 16 10 C 0.14 2.60 5.51 -62.65 -0.35 2.26 16 11 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 12 C -0.15 -2.54 6.83 -22.10 -0.15 -2.70 16 13 C 0.10 1.94 5.24 -62.54 -0.33 1.61 16 14 H 0.12 2.17 8.05 -51.93 -0.42 1.75 16 15 C 0.17 4.18 4.78 -1.67 -0.01 4.17 16 16 N -0.60 -14.47 3.02 -156.44 -0.47 -14.94 16 17 C -0.23 -6.15 10.36 -15.06 -0.16 -6.31 16 18 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 19 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 20 N -0.92 -26.86 10.61 55.49 0.59 -26.28 16 21 Si 0.91 21.72 29.56 -169.99 -5.02 16.69 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 N -0.24 -3.81 9.98 33.42 0.33 -3.47 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.21 2.49 8.06 -52.49 -0.42 2.07 16 30 H 0.06 0.92 7.77 -51.93 -0.40 0.51 16 31 H 0.07 1.52 7.95 -51.93 -0.41 1.11 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.55 7.39 -51.93 -0.38 1.17 16 35 H 0.05 1.29 7.76 -51.93 -0.40 0.88 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 304.79 15.07 4.59 4.59 Total: -1.00 -33.70 304.79 -5.87 -39.57 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.53 Total: 0.15 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: -1.29 Total: 13.07 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: 0.28 Total: -62.47 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.70 -5.87 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032681246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.673 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds