Wall clock time and date at job start Mon Mar 30 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28523 * 124.44168 * 2 1 4 4 C 1.31136 * 109.06033 * 180.02562 * 3 2 1 5 5 C 1.40930 * 105.77366 * 0.02562 * 4 3 2 6 6 C 1.47801 * 127.23512 * 179.97438 * 5 4 3 7 7 O 1.21564 * 119.99819 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00066 * 180.02562 * 6 5 4 9 9 C 1.47868 * 126.94700 * 359.97438 * 8 6 5 10 10 C 1.55476 * 105.17486 * 181.92886 * 9 8 6 11 11 H 1.08999 * 116.04188 * 159.75337 * 10 9 8 12 12 C 1.57433 * 99.68817 * 32.85608 * 10 9 8 13 13 C 1.49296 * 126.94681 * 179.97438 * 8 6 5 14 14 H 1.08997 * 116.14799 * 15.83290 * 13 8 6 15 15 C 1.56020 * 104.09190 * 246.69612 * 13 8 6 16 16 N 1.47873 * 105.10255 * 288.76406 * 15 13 8 17 17 C 1.36938 * 126.94782 * 181.97943 * 16 15 13 18 18 H 1.07999 * 120.00183 * 185.02510 * 17 16 15 19 19 C 1.38814 * 119.99739 * 5.02618 * 17 16 15 20 20 N 1.31627 * 119.99900 * 352.81913 * 19 17 16 21 21 Si 1.86795 * 120.00132 * 173.09983 * 19 17 16 22 22 H 1.48497 * 109.47501 * 94.98491 * 21 19 17 23 23 H 1.48498 * 109.47190 * 214.98689 * 21 19 17 24 24 H 1.48501 * 109.46774 * 334.98463 * 21 19 17 25 25 N 1.28590 * 124.44804 * 180.31248 * 2 1 3 26 26 H 1.09003 * 109.46967 * 89.98051 * 1 2 3 27 27 H 1.09009 * 109.46938 * 209.97302 * 1 2 3 28 28 H 1.08996 * 109.47630 * 329.97579 * 1 2 3 29 29 H 1.07995 * 127.11251 * 179.97438 * 4 3 2 30 30 H 1.09000 * 110.31655 * 300.91399 * 9 8 6 31 31 H 1.09001 * 110.31743 * 62.99395 * 9 8 6 32 32 H 1.09003 * 112.53411 * 191.71205 * 12 10 9 33 33 H 1.09001 * 112.31252 * 64.17284 * 12 10 9 34 34 H 1.08995 * 110.31511 * 169.85824 * 15 13 8 35 35 H 1.08998 * 110.31706 * 47.66801 * 15 13 8 36 36 H 0.97000 * 119.99826 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1918 1.0599 0.0000 4 6 3.4562 0.7121 -0.0006 5 6 3.4659 -0.6972 -0.0015 6 6 4.6487 -1.5834 -0.0029 7 8 5.7664 -1.1053 -0.0039 8 7 4.4881 -2.9215 -0.0043 9 6 3.2089 -3.6632 -0.0040 10 6 3.6091 -5.1648 0.0446 11 1 2.8391 -5.8543 0.3906 12 6 4.9233 -5.0610 0.9051 13 6 5.5659 -3.9546 -0.0063 14 1 6.5643 -3.6078 0.2601 15 6 5.4246 -4.6481 -1.3968 16 7 4.1788 -5.4398 -1.3077 17 6 3.6512 -6.2556 -2.2727 18 1 2.6887 -6.7208 -2.1195 19 6 4.3537 -6.4848 -3.4478 20 7 5.4564 -5.8108 -3.6975 21 14 3.7298 -7.7439 -4.6785 22 1 2.9151 -7.0611 -5.7155 23 1 4.8840 -8.4209 -5.3223 24 1 2.8942 -8.7507 -3.9761 25 7 2.1923 -1.0604 -0.0058 26 1 -0.3633 0.0003 -1.0277 27 1 -0.3633 -0.8903 0.5135 28 1 -0.3634 0.8897 0.5142 29 1 4.3129 1.3696 -0.0011 30 1 2.6189 -3.3996 0.8738 31 1 2.6479 -3.4505 -0.9140 32 1 5.4989 -5.9867 0.9019 33 1 4.7287 -4.7039 1.9164 34 1 6.2765 -5.3026 -1.5815 35 1 5.3424 -3.9007 -2.1859 36 1 5.9474 -5.9712 -4.5185 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032681246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:19 Heat of formation + Delta-G solvation = 122.007998 kcal Electronic energy + Delta-G solvation = -21902.506019 eV Core-core repulsion = 18618.930749 eV Total energy + Delta-G solvation = -3283.575270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.69044 -41.54039 -39.32210 -35.51504 -34.78233 -33.96618 -33.00634 -30.80000 -30.27234 -28.86718 -26.97815 -25.88858 -24.53911 -23.03461 -22.15140 -21.40089 -20.24208 -19.02820 -18.27191 -18.04206 -17.87079 -17.31631 -16.61037 -16.20215 -15.78660 -15.70123 -15.02226 -14.80261 -13.93830 -13.85923 -13.67498 -13.55679 -13.36457 -13.12960 -13.01210 -12.81083 -12.68762 -12.37211 -12.19868 -12.10222 -11.99305 -11.85110 -11.55897 -11.48774 -11.32037 -10.71669 -10.48509 -9.58673 -8.90189 -7.84716 -5.18947 0.21841 0.85933 1.26077 1.47255 1.48467 1.58067 1.88590 2.16596 2.49390 2.83914 3.32905 3.38997 3.59797 3.79999 3.91072 3.97291 4.02185 4.21397 4.29863 4.31593 4.48307 4.59639 4.66456 4.68794 4.82927 4.94605 4.97280 5.03889 5.13785 5.27004 5.45608 5.52852 5.55538 5.66065 6.10995 6.50899 6.90258 7.03795 7.10246 7.71612 8.42751 9.27290 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.020769 B = 0.005381 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.846283 B = 5201.987886 C = 5718.896369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.136 5.136 3 N -0.296 5.296 4 C 0.029 3.971 5 C -0.065 4.065 6 C 0.613 3.387 7 O -0.573 6.573 8 N -0.596 5.596 9 C 0.109 3.891 10 C 0.133 3.867 11 H 0.136 0.864 12 C -0.125 4.125 13 C 0.103 3.897 14 H 0.124 0.876 15 C 0.186 3.814 16 N -0.616 5.616 17 C -0.230 4.230 18 H 0.095 0.905 19 C -0.070 4.070 20 N -0.957 5.957 21 Si 0.976 3.024 22 H -0.294 1.294 23 H -0.299 1.299 24 H -0.260 1.260 25 N -0.248 5.248 26 H 0.107 0.893 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.223 0.777 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.026 0.974 35 H -0.007 1.007 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.886 8.616 12.016 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.041 5.041 3 N -0.136 5.136 4 C -0.153 4.153 5 C -0.226 4.226 6 C 0.400 3.600 7 O -0.452 6.452 8 N -0.328 5.328 9 C -0.015 4.015 10 C 0.027 3.973 11 H 0.154 0.846 12 C -0.164 4.164 13 C 0.001 3.999 14 H 0.142 0.858 15 C 0.060 3.940 16 N -0.341 5.341 17 C -0.359 4.359 18 H 0.112 0.888 19 C -0.263 4.263 20 N -0.606 5.606 21 Si 0.805 3.195 22 H -0.222 1.222 23 H -0.226 1.226 24 H -0.184 1.184 25 N -0.098 5.098 26 H 0.125 0.875 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.240 0.760 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.044 0.956 35 H 0.011 0.989 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.653 8.843 11.776 18.779 hybrid contribution 1.067 -0.368 -1.509 1.884 sum -10.586 8.475 10.267 17.009 Atomic orbital electron populations 1.22794 0.66800 1.08288 1.06988 1.48705 1.10736 0.98597 1.46080 1.73974 1.03568 1.15882 1.20216 1.25103 0.95118 0.93107 1.01976 1.22847 0.91239 0.95147 1.13335 1.16546 0.86315 0.80528 0.76621 1.90739 1.25200 1.75214 1.54028 1.49109 1.10414 1.03807 1.69449 1.23012 0.84154 0.93336 1.01044 1.23620 0.95950 0.92741 0.85021 0.84612 1.24104 0.97032 0.97590 0.97703 1.24321 0.92191 0.86162 0.97264 0.85809 1.21558 0.89241 0.91782 0.91461 1.45508 1.24273 1.51738 1.12586 1.19526 1.01832 1.18901 0.95592 0.88752 1.25670 0.97978 1.02128 1.00526 1.70173 1.19907 1.44361 1.26147 0.85094 0.76658 0.79038 0.78741 1.22184 1.22623 1.18429 1.74507 1.02903 1.15993 1.16363 0.87505 0.85778 0.85147 0.76007 0.89296 0.93492 0.89384 0.87933 0.95589 0.98894 0.94662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 11.55 127.77 1.48 2.45 16 2 N -0.14 -3.23 4.35 -206.55 -0.90 -4.13 16 3 N -0.30 -7.65 12.01 -56.16 -0.67 -8.32 16 4 C 0.03 0.84 12.04 85.46 1.03 1.87 16 5 C -0.06 -2.17 7.05 42.24 0.30 -1.88 16 6 C 0.61 24.07 7.90 86.77 0.69 24.76 16 7 O -0.57 -25.00 17.30 -3.92 -0.07 -25.07 16 8 N -0.60 -22.90 2.95 -772.80 -2.28 -25.18 16 9 C 0.11 3.78 4.98 86.97 0.43 4.21 16 10 C 0.13 4.72 5.51 46.87 0.26 4.98 16 11 H 0.14 4.04 8.14 -2.39 -0.02 4.02 16 12 C -0.13 -3.94 6.83 33.60 0.23 -3.71 16 13 C 0.10 4.03 5.24 46.93 0.25 4.27 16 14 H 0.12 4.64 8.05 -2.39 -0.02 4.62 16 15 C 0.19 9.35 4.78 87.16 0.42 9.76 16 16 N -0.62 -29.96 3.02 -648.87 -1.96 -31.92 16 17 C -0.23 -12.27 10.36 84.03 0.87 -11.40 16 18 H 0.09 4.66 7.84 -2.91 -0.02 4.63 16 19 C -0.07 -3.97 5.48 84.86 0.47 -3.51 16 20 N -0.96 -58.67 10.61 21.65 0.23 -58.44 16 21 Si 0.98 45.33 29.56 68.60 2.03 47.36 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 25 N -0.25 -7.38 9.98 -48.16 -0.48 -7.86 16 26 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 27 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.22 5.20 8.06 -2.91 -0.02 5.18 16 30 H 0.09 2.55 7.77 -2.39 -0.02 2.53 16 31 H 0.05 1.90 7.95 -2.39 -0.02 1.88 16 32 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.03 1.46 7.39 -2.39 -0.02 1.44 16 35 H -0.01 -0.43 7.76 -2.39 -0.02 -0.45 16 36 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -76.28 304.79 3.40 -72.88 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.09 Total: 8.85 kcal Atomic # 6 Polarization: 25.41 SS G_CDS: 6.41 Total: 31.82 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -6.06 Total: -135.84 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.07 Total: -25.07 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -76.28 3.40 -72.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032681246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.884 kcal (2) G-P(sol) polarization free energy of solvation -76.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds