Wall clock time and date at job start Mon Mar 30 2020 02:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99516 * 2 1 4 4 O 1.21572 * 119.99902 * 184.73273 * 3 2 1 5 5 C 1.47730 * 120.00251 * 4.73768 * 3 2 1 6 6 N 1.33019 * 120.16449 * 75.02124 * 5 3 2 7 7 C 1.31718 * 120.01083 * 180.02562 * 6 5 3 8 8 C 1.38805 * 120.34596 * 0.02562 * 7 6 5 9 9 N 1.32032 * 120.32455 * 0.02562 * 8 7 6 10 10 C 1.32832 * 119.98098 * 359.67130 * 9 8 7 11 11 N 1.38270 * 120.17188 * 180.29273 * 10 9 8 12 12 C 1.46498 * 120.00429 * 180.02562 * 2 1 3 13 13 C 1.53492 * 114.20873 * 59.99249 * 12 2 1 14 14 N 1.47068 * 87.98346 * 220.15241 * 13 12 2 15 15 C 1.36944 * 136.05183 * 207.08341 * 14 13 12 16 16 H 1.07992 * 120.00344 * 354.32301 * 15 14 13 17 17 C 1.38813 * 119.99409 * 174.31786 * 15 14 13 18 18 N 1.31623 * 119.99436 * 182.06092 * 17 15 14 19 19 Si 1.86799 * 120.00255 * 2.06014 * 17 15 14 20 20 H 1.48503 * 109.46946 * 174.70720 * 19 17 15 21 21 H 1.48502 * 109.47065 * 294.70848 * 19 17 15 22 22 H 1.48494 * 109.47206 * 54.70927 * 19 17 15 23 23 C 1.47060 * 87.88956 * 27.34477 * 14 13 12 24 24 H 1.09002 * 109.46613 * 275.06755 * 1 2 3 25 25 H 1.08996 * 109.47356 * 35.06867 * 1 2 3 26 26 H 1.09005 * 109.47010 * 155.07812 * 1 2 3 27 27 H 1.08002 * 119.83115 * 179.97438 * 7 6 5 28 28 H 1.07999 * 119.84159 * 180.02562 * 8 7 6 29 29 H 0.97002 * 120.00607 * 185.41101 * 11 10 9 30 30 H 0.97001 * 119.99644 * 5.42002 * 11 10 9 31 31 H 1.08995 * 113.28390 * 193.06548 * 12 2 1 32 32 H 1.08995 * 113.46923 * 105.37117 * 13 12 2 33 33 H 1.08999 * 113.46576 * 334.92972 * 13 12 2 34 34 H 0.96993 * 120.00543 * 5.01949 * 18 17 15 35 35 H 1.08992 * 113.47159 * 87.43558 * 23 14 13 36 36 H 1.09003 * 113.47016 * 217.88479 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3514 1.1691 -0.0869 5 6 1.4039 2.4444 0.1057 6 7 0.8939 2.8275 1.2729 7 6 0.2387 3.9666 1.3636 8 6 0.0757 4.7728 0.2455 9 7 0.5755 4.4051 -0.9200 10 6 1.2437 3.2619 -1.0248 11 7 1.7739 2.8760 -2.2421 12 6 2.1976 -1.2687 -0.0006 13 6 1.9061 -2.1633 -1.2133 14 7 1.9170 -3.3160 -0.3000 15 6 2.1886 -4.6542 -0.4046 16 1 2.3883 -5.0907 -1.3719 17 6 2.2073 -5.4494 0.7330 18 7 2.5082 -6.7273 0.6377 19 14 1.8056 -4.7061 2.3990 20 1 1.7691 -5.7798 3.4243 21 1 2.8467 -3.7110 2.7611 22 1 0.4816 -4.0367 2.3361 23 6 1.5016 -2.4005 0.7733 24 1 -0.3632 0.0908 1.0237 25 1 -0.3634 0.8411 -0.5904 26 1 -0.3633 -0.9320 -0.4331 27 1 -0.1745 4.2746 2.3127 28 1 -0.4625 5.7053 0.3292 29 1 2.1927 2.0059 -2.3348 30 1 1.7273 3.4754 -3.0033 31 1 3.2576 -1.1542 0.2258 32 1 2.7145 -2.1808 -1.9441 33 1 0.9320 -1.9772 -1.6657 34 1 2.7874 -7.0976 -0.2141 35 1 0.4211 -2.2770 0.8445 36 1 1.9657 -2.6200 1.7349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042552356.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:25 Heat of formation + Delta-G solvation = 67.887155 kcal Electronic energy + Delta-G solvation = -21487.505404 eV Core-core repulsion = 18201.583278 eV Total energy + Delta-G solvation = -3285.922126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.37061 -41.16033 -39.53346 -36.59419 -36.15394 -34.81056 -34.32088 -30.98700 -29.87622 -28.12514 -27.12415 -26.78043 -24.79476 -24.29479 -22.00052 -20.54544 -19.64331 -19.47632 -18.81448 -18.59698 -18.01917 -17.26846 -16.63484 -16.51587 -16.15895 -15.80556 -15.63693 -15.32434 -15.12700 -14.37503 -14.09532 -13.81315 -13.62440 -13.41389 -13.28877 -13.22781 -12.86978 -12.61958 -12.39729 -12.28723 -11.74397 -11.48501 -11.32966 -11.14903 -11.11533 -10.12856 -9.75908 -9.27422 -9.13658 -8.67577 -5.53980 -0.27702 0.26648 1.18012 1.37212 1.45842 1.65566 1.66567 2.24245 2.50262 2.70136 2.90065 3.10465 3.20198 3.36591 3.43013 3.62111 3.97122 4.03072 4.11809 4.18931 4.23197 4.43734 4.49793 4.50307 4.53197 4.67567 4.80203 4.95271 5.09176 5.30398 5.42150 5.78523 5.89850 6.14080 6.21077 6.50993 6.64365 6.83859 6.90439 7.25883 8.17228 8.86420 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.034816 B = 0.004463 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.031655 B = 6272.823030 C = 6668.670657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.581 5.581 3 C 0.583 3.417 4 O -0.564 6.564 5 C -0.052 4.052 6 N -0.397 5.397 7 C -0.013 4.013 8 C 0.138 3.862 9 N -0.513 5.513 10 C 0.387 3.613 11 N -0.821 5.821 12 C 0.121 3.879 13 C 0.117 3.883 14 N -0.652 5.652 15 C -0.291 4.291 16 H 0.056 0.944 17 C -0.079 4.079 18 N -0.968 5.968 19 Si 1.108 2.892 20 H -0.302 1.302 21 H -0.278 1.278 22 H -0.257 1.257 23 C 0.084 3.916 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.209 0.791 28 H 0.221 0.779 29 H 0.413 0.587 30 H 0.419 0.581 31 H 0.109 0.891 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.248 0.752 35 H 0.074 0.926 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.722 27.352 -1.761 29.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.312 5.312 3 C 0.370 3.630 4 O -0.442 6.442 5 C -0.200 4.200 6 N -0.113 5.113 7 C -0.179 4.179 8 C -0.026 4.026 9 N -0.237 5.237 10 C 0.146 3.854 11 N -0.363 5.363 12 C 0.016 3.984 13 C -0.009 4.009 14 N -0.380 5.380 15 C -0.418 4.418 16 H 0.073 0.927 17 C -0.271 4.271 18 N -0.613 5.613 19 Si 0.934 3.066 20 H -0.230 1.230 21 H -0.206 1.206 22 H -0.182 1.182 23 C -0.041 4.041 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.225 0.775 28 H 0.237 0.763 29 H 0.244 0.756 30 H 0.252 0.748 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.222 26.657 -0.335 28.209 hybrid contribution 0.705 -0.541 -2.255 2.423 sum -8.517 26.116 -2.590 27.592 Atomic orbital electron populations 1.21938 0.77238 1.03827 1.03246 1.47773 1.08270 1.04284 1.70839 1.18038 0.86190 0.83332 0.75475 1.90800 1.14850 1.87468 1.51078 1.20738 1.09134 0.98428 0.91700 1.68143 1.03680 1.16639 1.22868 1.24146 1.00193 0.90924 1.02599 1.24570 0.91461 1.00181 0.86410 1.68249 1.12964 1.13934 1.28517 1.19022 0.89429 0.89961 0.87002 1.42133 1.62715 1.22421 1.09079 1.23027 0.97017 0.80371 0.97965 1.22911 1.00066 0.84195 0.93775 1.45752 1.80007 1.03406 1.08884 1.20003 1.44516 0.82432 0.94862 0.92661 1.26987 0.99913 0.94826 1.05365 1.71015 1.50038 1.12863 1.27422 0.83274 0.77934 0.73306 0.72056 1.22981 1.20553 1.18195 1.23413 0.99127 0.87839 0.93708 0.91086 0.90415 0.89514 0.77458 0.76263 0.75569 0.74813 0.87295 0.93118 0.91406 0.94268 0.90832 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.75 8.90 127.77 1.14 2.89 16 2 N -0.58 -16.83 3.12 -824.93 -2.57 -19.39 16 3 C 0.58 17.88 6.07 86.75 0.53 18.41 16 4 O -0.56 -21.27 16.63 -3.94 -0.07 -21.33 16 5 C -0.05 -1.31 4.78 42.01 0.20 -1.11 16 6 N -0.40 -9.09 10.44 -183.94 -1.92 -11.01 16 7 C -0.01 -0.18 11.21 84.85 0.95 0.77 16 8 C 0.14 1.54 11.22 84.80 0.95 2.49 16 9 N -0.51 -8.99 10.52 -191.86 -2.02 -11.01 16 10 C 0.39 8.18 7.77 133.50 1.04 9.22 16 11 N -0.82 -14.37 8.97 -54.83 -0.49 -14.86 16 12 C 0.12 4.32 4.55 45.55 0.21 4.53 16 13 C 0.12 4.39 8.23 83.18 0.68 5.08 16 14 N -0.65 -31.43 3.69 -737.99 -2.72 -34.15 16 15 C -0.29 -16.99 11.09 84.03 0.93 -16.06 16 16 H 0.06 3.46 8.05 -2.91 -0.02 3.44 16 17 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 18 N -0.97 -62.96 13.70 21.65 0.30 -62.66 16 19 Si 1.11 54.11 25.05 68.60 1.72 55.83 16 20 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 21 H -0.28 -12.88 6.47 99.48 0.64 -12.24 16 22 H -0.26 -11.06 6.60 99.48 0.66 -10.40 16 23 C 0.08 3.40 5.35 83.28 0.45 3.84 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.08 1.45 7.20 -2.39 -0.02 1.43 16 26 H 0.09 1.88 5.98 -2.38 -0.01 1.87 16 27 H 0.21 1.15 8.06 -2.91 -0.02 1.13 16 28 H 0.22 0.27 8.06 -2.91 -0.02 0.25 16 29 H 0.41 7.80 7.66 -92.71 -0.71 7.09 16 30 H 0.42 5.32 8.95 -92.71 -0.83 4.49 16 31 H 0.11 4.34 7.33 -2.39 -0.02 4.32 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 2.22 7.04 -2.39 -0.02 2.20 16 34 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 35 H 0.07 2.64 6.40 -2.39 -0.02 2.62 16 36 H 0.05 2.05 3.96 -2.39 -0.01 2.04 16 Total: -1.00 -79.41 300.66 -0.77 -80.18 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -0.54 Total: 12.61 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 7.54 Total: 25.78 kcal Atomic # 7 Polarization: -143.65 SS G_CDS: -9.42 Total: -153.08 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.07 Total: -21.33 kcal Atomic # 14 Polarization: 54.11 SS G_CDS: 1.72 Total: 55.83 kcal Total: -79.41 -0.77 -80.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042552356.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.070 kcal (2) G-P(sol) polarization free energy of solvation -79.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds