Wall clock time and date at job start Mon Mar 30 2020 02:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 120.00140 * 2 1 4 4 C 1.53001 * 109.46719 * 90.00726 * 3 2 1 5 5 C 1.52998 * 109.46803 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46980 * 179.97438 * 5 4 3 7 7 N 1.34330 * 126.23569 * 264.97454 * 6 5 4 8 8 H 0.96991 * 125.68586 * 0.02562 * 7 6 5 9 9 N 1.39922 * 108.62184 * 180.02562 * 7 6 5 10 10 C 1.30957 * 108.86554 * 359.97438 * 9 7 6 11 11 N 1.39583 * 126.06866 * 179.97438 * 10 9 7 12 12 C 1.38077 * 126.23439 * 85.28843 * 6 5 4 13 13 C 1.43196 * 126.44118 * 359.97438 * 12 6 5 14 14 N 5.97754 * 145.92937 * 63.98169 * 2 1 3 15 15 C 1.34777 * 119.99809 * 180.02562 * 2 1 3 16 16 O 1.21693 * 120.00023 * 179.97438 * 15 2 1 17 17 C 1.46379 * 119.99991 * 359.97438 * 15 2 1 18 18 H 1.07995 * 119.99776 * 355.24602 * 17 15 2 19 19 C 1.40048 * 119.99752 * 175.24432 * 17 15 2 20 20 N 1.30672 * 120.00008 * 6.28831 * 19 17 15 21 21 Si 1.86803 * 119.99860 * 186.27959 * 19 17 15 22 22 H 1.48499 * 109.46964 * 94.98668 * 21 19 17 23 23 H 1.48496 * 109.47203 * 214.98588 * 21 19 17 24 24 H 1.48494 * 109.47000 * 334.98805 * 21 19 17 25 25 H 1.08993 * 109.47650 * 89.99304 * 1 2 3 26 26 H 1.08996 * 109.46914 * 210.00341 * 1 2 3 27 27 H 1.09000 * 109.46703 * 329.99029 * 1 2 3 28 28 H 1.08997 * 109.47063 * 330.00948 * 3 2 1 29 29 H 1.09000 * 109.46799 * 210.00385 * 3 2 1 30 30 H 1.09000 * 109.47091 * 59.99779 * 4 3 2 31 31 H 1.08997 * 109.46941 * 300.00129 * 4 3 2 32 32 H 1.09000 * 109.47460 * 60.00026 * 5 4 3 33 33 H 1.08997 * 109.47495 * 299.99811 * 5 4 3 34 34 H 0.96996 * 120.00015 * 0.03331 * 11 10 9 35 35 H 0.96997 * 119.99779 * 179.74925 * 11 10 9 36 36 H 0.97007 * 119.99474 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4527 1.7102 1.4425 5 6 3.2183 3.0349 1.4426 6 6 3.4690 3.4701 2.8634 7 7 2.7115 4.3170 3.5799 8 1 1.9041 4.7553 3.2689 9 7 3.2814 4.4612 4.8496 10 6 4.3611 3.7231 4.9155 11 7 5.2067 3.6006 6.0193 12 6 4.5227 3.0757 3.6639 13 6 5.5780 2.1788 3.3001 14 7 6.4165 1.4689 3.0093 15 6 2.1389 -1.1672 -0.0005 16 8 3.3558 -1.1673 -0.0010 17 6 1.4069 -2.4349 -0.0005 18 1 0.3298 -2.4364 0.0774 19 6 2.1035 -3.6456 -0.1016 20 7 3.4099 -3.6522 -0.0721 21 14 1.1651 -5.2511 -0.2784 22 1 1.0534 -5.6034 -1.7166 23 1 1.8896 -6.3297 0.4406 24 1 -0.1937 -5.0965 0.3003 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8899 0.5140 28 1 1.6084 2.0284 -0.5137 29 1 3.1499 1.1383 -0.5139 30 1 3.0418 0.9505 1.9562 31 1 1.5003 1.8405 1.9564 32 1 2.6296 3.7949 0.9287 33 1 4.1706 2.9042 0.9288 34 1 5.0141 4.0896 6.8345 35 1 5.9846 3.0231 5.9724 36 1 3.8923 -4.4909 -0.1418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116642698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:45 Heat of formation + Delta-G solvation = 59.612150 kcal Electronic energy + Delta-G solvation = -20646.556307 eV Core-core repulsion = 17360.275350 eV Total energy + Delta-G solvation = -3286.280957 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46282 -37.84779 -36.14907 -35.48534 -34.45842 -33.05560 -32.43028 -30.27699 -29.93681 -27.17462 -25.91246 -24.67366 -22.47782 -21.53369 -21.18243 -19.13323 -18.52784 -16.61070 -16.48284 -16.17479 -15.81075 -15.60834 -15.31048 -14.57270 -14.52363 -14.01559 -13.87206 -13.27951 -12.94565 -12.81909 -12.48803 -12.30353 -12.02125 -11.72560 -11.56496 -11.40843 -11.30654 -11.19064 -11.05628 -10.89807 -10.74927 -10.37404 -10.18102 -10.09151 -8.84850 -8.79028 -8.23988 -7.57987 -7.23672 -6.18891 -4.63444 1.41302 2.35010 2.44519 2.95178 3.13977 3.21180 3.24394 3.50284 3.77517 4.08961 4.29398 4.51696 4.60294 4.62744 4.77663 5.08062 5.35082 5.42329 5.60260 5.71085 5.75825 5.85136 5.92875 6.00455 6.08356 6.39124 6.52048 6.52731 6.73635 6.88737 7.08865 7.24857 7.45786 7.61906 7.81241 7.92462 8.14044 8.34792 9.03273 9.41723 10.58396 10.77188 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.004045 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.212128 B = 6919.813094 C = 7526.907684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.650 5.650 3 C 0.129 3.871 4 C -0.127 4.127 5 C -0.068 4.068 6 C 0.193 3.807 7 N -0.452 5.452 8 H 0.446 0.554 9 N -0.354 5.354 10 C 0.388 3.612 11 N -0.837 5.837 12 C -0.224 4.224 13 C 0.282 3.718 14 N -0.423 5.423 15 C 0.554 3.446 16 O -0.574 6.574 17 C -0.546 4.546 18 H 0.072 0.928 19 C 0.087 3.913 20 N -0.765 5.765 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.265 1.265 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.407 0.593 35 H 0.412 0.588 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.806 16.057 6.945 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.388 5.388 3 C 0.005 3.995 4 C -0.167 4.167 5 C -0.108 4.108 6 C 0.055 3.945 7 N -0.157 5.157 8 H 0.292 0.708 9 N -0.188 5.188 10 C 0.124 3.876 11 N -0.389 5.389 12 C -0.242 4.242 13 C -0.033 4.033 14 N -0.100 5.100 15 C 0.360 3.640 16 O -0.456 6.456 17 C -0.582 4.582 18 H 0.090 0.910 19 C -0.133 4.133 20 N -0.393 5.393 21 Si 0.730 3.270 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.189 1.189 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.236 0.764 35 H 0.243 0.757 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.450 15.658 7.075 17.356 hybrid contribution -0.661 -0.865 -0.166 1.101 sum -3.111 14.793 6.909 16.621 Atomic orbital electron populations 1.21373 0.82270 1.00932 0.99553 1.48002 1.05097 1.05348 1.80360 1.20938 0.97985 0.86713 0.93903 1.22021 0.99602 0.94611 1.00468 1.20552 1.03613 0.98917 0.87742 1.21478 0.89146 0.89102 0.94795 1.45511 1.23648 1.37004 1.09502 0.70821 1.77290 1.12831 1.29378 0.99287 1.18959 0.89872 0.91666 0.87074 1.41322 1.29495 1.55174 1.12867 1.15405 1.00348 1.12718 0.95753 1.24424 0.92389 0.92183 0.94293 1.81353 1.11643 1.10534 1.06497 1.18282 0.87027 0.82306 0.76361 1.90619 1.13950 1.86226 1.54788 1.21008 0.93986 0.89372 1.53848 0.90976 1.25736 0.94588 1.00219 0.92723 1.70034 1.07214 1.27221 1.34851 0.86397 0.80284 0.81519 0.78804 1.19797 1.20463 1.18878 0.95062 0.91094 0.94226 0.92824 0.90746 0.90565 0.92140 0.89529 0.88367 0.76367 0.75741 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.82 10.18 59.85 0.61 2.43 16 2 N -0.65 -14.28 2.87 -183.25 -0.53 -14.81 16 3 C 0.13 2.30 5.41 -4.04 -0.02 2.28 16 4 C -0.13 -1.95 5.52 -26.73 -0.15 -2.10 16 5 C -0.07 -0.77 5.53 -27.88 -0.15 -0.92 16 6 C 0.19 2.24 6.54 -81.56 -0.53 1.70 16 7 N -0.45 -4.41 7.28 33.88 0.25 -4.16 16 8 H 0.45 2.78 8.96 -182.74 -1.64 1.14 16 9 N -0.35 -4.18 12.66 31.58 0.40 -3.78 16 10 C 0.39 4.67 8.44 -154.62 -1.31 3.36 16 11 N -0.84 -7.48 9.13 31.55 0.29 -7.19 16 12 C -0.22 -3.02 5.98 -106.66 -0.64 -3.66 16 13 C 0.28 4.58 15.28 -22.46 -0.34 4.23 16 14 N -0.42 -8.03 18.54 41.85 0.78 -7.25 16 15 C 0.55 15.67 7.61 -12.99 -0.10 15.58 16 16 O -0.57 -18.53 14.62 5.20 0.08 -18.46 16 17 C -0.55 -15.31 8.76 -35.63 -0.31 -15.62 16 18 H 0.07 1.84 5.95 -52.49 -0.31 1.53 16 19 C 0.09 2.45 5.49 -17.37 -0.10 2.35 16 20 N -0.76 -23.19 11.85 55.55 0.66 -22.53 16 21 Si 0.91 20.20 29.56 -169.99 -5.03 15.17 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 1.32 6.04 -51.93 -0.31 1.01 16 27 H 0.04 0.55 8.07 -51.93 -0.42 0.14 16 28 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.07 1.51 7.42 -51.93 -0.39 1.13 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 1.20 8.05 -51.93 -0.42 0.78 16 34 H 0.41 2.71 8.96 -40.82 -0.37 2.35 16 35 H 0.41 3.35 8.74 -40.82 -0.36 3.00 16 36 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -38.02 323.71 -6.72 -44.74 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.45 Total: 3.76 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: -3.04 Total: 9.63 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 1.84 Total: -59.72 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.08 Total: -18.46 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -38.02 -6.72 -44.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116642698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.355 kcal (2) G-P(sol) polarization free energy of solvation -38.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds