Wall clock time and date at job start Mon Mar 30 2020 02:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 120.00140 * 2 1 4 4 C 1.53001 * 109.46719 * 90.00726 * 3 2 1 5 5 C 1.52998 * 109.46803 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46980 * 179.97438 * 5 4 3 7 7 N 1.34330 * 126.23569 * 264.97454 * 6 5 4 8 8 H 0.96991 * 125.68586 * 0.02562 * 7 6 5 9 9 N 1.39922 * 108.62184 * 180.02562 * 7 6 5 10 10 C 1.30957 * 108.86554 * 359.97438 * 9 7 6 11 11 N 1.39583 * 126.06866 * 179.97438 * 10 9 7 12 12 C 1.38077 * 126.23439 * 85.28843 * 6 5 4 13 13 C 1.43196 * 126.44118 * 359.97438 * 12 6 5 14 14 N 5.97754 * 145.92937 * 63.98169 * 2 1 3 15 15 C 1.34777 * 119.99809 * 180.02562 * 2 1 3 16 16 O 1.21693 * 120.00023 * 179.97438 * 15 2 1 17 17 C 1.46379 * 119.99991 * 359.97438 * 15 2 1 18 18 H 1.07995 * 119.99776 * 355.24602 * 17 15 2 19 19 C 1.40048 * 119.99752 * 175.24432 * 17 15 2 20 20 N 1.30672 * 120.00008 * 6.28831 * 19 17 15 21 21 Si 1.86803 * 119.99860 * 186.27959 * 19 17 15 22 22 H 1.48499 * 109.46964 * 94.98668 * 21 19 17 23 23 H 1.48496 * 109.47203 * 214.98588 * 21 19 17 24 24 H 1.48494 * 109.47000 * 334.98805 * 21 19 17 25 25 H 1.08993 * 109.47650 * 89.99304 * 1 2 3 26 26 H 1.08996 * 109.46914 * 210.00341 * 1 2 3 27 27 H 1.09000 * 109.46703 * 329.99029 * 1 2 3 28 28 H 1.08997 * 109.47063 * 330.00948 * 3 2 1 29 29 H 1.09000 * 109.46799 * 210.00385 * 3 2 1 30 30 H 1.09000 * 109.47091 * 59.99779 * 4 3 2 31 31 H 1.08997 * 109.46941 * 300.00129 * 4 3 2 32 32 H 1.09000 * 109.47460 * 60.00026 * 5 4 3 33 33 H 1.08997 * 109.47495 * 299.99811 * 5 4 3 34 34 H 0.96996 * 120.00015 * 0.03331 * 11 10 9 35 35 H 0.96997 * 119.99779 * 179.74925 * 11 10 9 36 36 H 0.97007 * 119.99474 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4527 1.7102 1.4425 5 6 3.2183 3.0349 1.4426 6 6 3.4690 3.4701 2.8634 7 7 2.7115 4.3170 3.5799 8 1 1.9041 4.7553 3.2689 9 7 3.2814 4.4612 4.8496 10 6 4.3611 3.7231 4.9155 11 7 5.2067 3.6006 6.0193 12 6 4.5227 3.0757 3.6639 13 6 5.5780 2.1788 3.3001 14 7 6.4165 1.4689 3.0093 15 6 2.1389 -1.1672 -0.0005 16 8 3.3558 -1.1673 -0.0010 17 6 1.4069 -2.4349 -0.0005 18 1 0.3298 -2.4364 0.0774 19 6 2.1035 -3.6456 -0.1016 20 7 3.4099 -3.6522 -0.0721 21 14 1.1651 -5.2511 -0.2784 22 1 1.0534 -5.6034 -1.7166 23 1 1.8896 -6.3297 0.4406 24 1 -0.1937 -5.0965 0.3003 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8899 0.5140 28 1 1.6084 2.0284 -0.5137 29 1 3.1499 1.1383 -0.5139 30 1 3.0418 0.9505 1.9562 31 1 1.5003 1.8405 1.9564 32 1 2.6296 3.7949 0.9287 33 1 4.1706 2.9042 0.9288 34 1 5.0141 4.0896 6.8345 35 1 5.9846 3.0231 5.9724 36 1 3.8923 -4.4909 -0.1418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116642698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:45 Heat of formation + Delta-G solvation = 30.093443 kcal Electronic energy + Delta-G solvation = -20647.836334 eV Core-core repulsion = 17360.275350 eV Total energy + Delta-G solvation = -3287.560984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.39604 -39.71361 -37.47582 -36.75836 -35.78791 -34.59497 -34.39358 -31.38458 -30.93450 -28.78563 -27.60510 -26.19989 -23.76552 -22.73236 -22.11069 -20.94677 -19.52265 -18.41821 -17.68790 -17.55351 -17.07124 -16.64009 -16.35256 -16.20486 -16.01331 -15.50597 -15.37372 -14.67623 -14.25973 -14.18377 -14.06161 -13.60941 -13.37015 -13.34689 -13.04846 -13.01764 -12.82827 -12.75229 -12.45613 -12.16740 -12.11823 -11.99519 -11.74306 -11.52994 -10.92875 -9.83900 -9.73152 -9.10257 -9.02343 -8.28126 -6.82087 0.40453 1.35505 1.38576 1.39929 1.55589 1.63730 1.69812 2.23918 2.47391 2.54488 2.66062 2.95213 3.24605 3.61510 3.69307 3.85690 4.05156 4.20502 4.29164 4.49035 4.59412 4.65652 4.75791 4.82671 4.94234 5.00811 5.10242 5.18852 5.36822 5.40304 5.81430 6.08164 6.18478 6.30269 6.48339 6.51053 6.63684 6.89453 7.08281 7.45507 8.50722 8.70060 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.004045 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.212128 B = 6919.813094 C = 7526.907684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.654 5.654 3 C 0.124 3.876 4 C -0.113 4.113 5 C -0.059 4.059 6 C 0.207 3.793 7 N -0.427 5.427 8 H 0.465 0.535 9 N -0.362 5.362 10 C 0.386 3.614 11 N -0.827 5.827 12 C -0.258 4.258 13 C 0.305 3.695 14 N -0.488 5.488 15 C 0.536 3.464 16 O -0.632 6.632 17 C -0.572 4.572 18 H 0.094 0.906 19 C 0.026 3.974 20 N -0.825 5.825 21 Si 0.994 3.006 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.244 1.244 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.036 0.964 30 H 0.017 0.983 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.419 0.581 35 H 0.415 0.585 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 17.769 7.130 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.390 5.390 3 C 0.001 3.999 4 C -0.153 4.153 5 C -0.099 4.099 6 C 0.066 3.934 7 N -0.133 5.133 8 H 0.315 0.685 9 N -0.196 5.196 10 C 0.122 3.878 11 N -0.380 5.380 12 C -0.277 4.277 13 C -0.008 4.008 14 N -0.167 5.167 15 C 0.341 3.659 16 O -0.519 6.519 17 C -0.608 4.608 18 H 0.112 0.888 19 C -0.188 4.188 20 N -0.454 5.454 21 Si 0.813 3.187 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.167 1.167 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.159 0.841 33 H 0.102 0.898 34 H 0.251 0.749 35 H 0.246 0.754 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.003 17.455 7.288 19.845 hybrid contribution 0.342 -1.243 -0.200 1.305 sum -5.661 16.212 7.089 18.577 Atomic orbital electron populations 1.21586 0.79242 1.02605 1.00940 1.47858 1.07141 1.05128 1.78831 1.21196 0.96863 0.86166 0.95673 1.21788 1.00291 0.95017 0.98242 1.20487 1.03334 0.98099 0.87954 1.21373 0.88632 0.88766 0.94625 1.45528 1.23547 1.35723 1.08508 0.68549 1.77293 1.12764 1.29528 1.00053 1.19101 0.90200 0.91289 0.87177 1.41376 1.29006 1.54918 1.12652 1.15653 1.00900 1.13724 0.97410 1.24875 0.91915 0.91341 0.92670 1.81354 1.13911 1.12862 1.08552 1.18667 0.86608 0.84578 0.76010 1.90573 1.16429 1.87686 1.57186 1.21582 0.95227 0.90090 1.53917 0.88774 1.27023 0.95432 1.04938 0.91422 1.70231 1.09839 1.28625 1.36751 0.85066 0.79141 0.75279 0.79194 1.18775 1.20187 1.16692 0.93689 0.92493 0.89502 0.87373 0.94537 0.96406 0.89665 0.84149 0.89833 0.74949 0.75392 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.20 10.18 127.77 1.30 4.50 16 2 N -0.65 -28.34 2.87 -851.88 -2.45 -30.79 16 3 C 0.12 4.28 5.41 86.38 0.47 4.75 16 4 C -0.11 -3.35 5.52 30.59 0.17 -3.18 16 5 C -0.06 -1.19 5.53 29.85 0.17 -1.03 16 6 C 0.21 4.36 6.54 42.14 0.28 4.64 16 7 N -0.43 -6.87 7.28 -46.74 -0.34 -7.21 16 8 H 0.46 3.62 8.96 -213.45 -1.91 1.71 16 9 N -0.36 -7.64 12.66 -54.01 -0.68 -8.32 16 10 C 0.39 8.81 8.44 133.96 1.13 9.94 16 11 N -0.83 -14.01 9.13 -54.09 -0.49 -14.51 16 12 C -0.26 -6.87 5.98 -21.18 -0.13 -7.00 16 13 C 0.31 10.41 15.28 88.33 1.35 11.76 16 14 N -0.49 -19.89 18.54 19.01 0.35 -19.53 16 15 C 0.54 31.29 7.61 86.36 0.66 31.95 16 16 O -0.63 -43.33 14.62 -4.33 -0.06 -43.39 16 17 C -0.57 -32.56 8.76 24.83 0.22 -32.34 16 18 H 0.09 4.74 5.95 -2.91 -0.02 4.73 16 19 C 0.03 1.51 5.49 85.30 0.47 1.98 16 20 N -0.82 -52.28 11.85 21.84 0.26 -52.02 16 21 Si 0.99 41.69 29.56 68.60 2.03 43.72 16 22 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 23 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.24 -9.31 7.11 99.48 0.71 -8.60 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 2.00 6.04 -2.39 -0.01 1.98 16 27 H 0.09 1.99 8.07 -2.39 -0.02 1.97 16 28 H 0.11 2.54 8.07 -2.39 -0.02 2.52 16 29 H 0.04 1.53 7.42 -2.39 -0.02 1.51 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 32 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 2.00 8.05 -2.39 -0.02 1.98 16 34 H 0.42 4.99 8.96 -92.71 -0.83 4.16 16 35 H 0.42 6.69 8.74 -92.71 -0.81 5.88 16 36 H 0.27 15.70 8.29 -92.70 -0.77 14.93 16 Total: -1.00 -90.68 323.71 2.30 -88.39 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -2.39 Total: 17.70 kcal Atomic # 6 Polarization: 19.89 SS G_CDS: 6.08 Total: 25.97 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -3.35 Total: -132.38 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.06 Total: -43.39 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -90.68 2.30 -88.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116642698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.479 kcal (2) G-P(sol) polarization free energy of solvation -90.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds