Wall clock time and date at job start Mon Mar 30 2020 02:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00518 * 2 1 4 4 C 1.50700 * 109.47190 * 275.00660 * 3 2 1 5 5 H 1.07991 * 120.00311 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99624 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99683 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00192 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47073 * 90.00019 * 8 6 4 10 10 H 1.48492 * 109.46948 * 210.00262 * 8 6 4 11 11 H 1.48499 * 109.46943 * 330.00206 * 8 6 4 12 12 S 1.65607 * 119.99628 * 180.02562 * 2 1 3 13 13 O 1.42096 * 106.40158 * 336.45446 * 12 2 1 14 14 O 1.42105 * 106.39515 * 203.53818 * 12 2 1 15 15 N 1.65601 * 107.21921 * 90.00130 * 12 2 1 16 16 C 1.47426 * 125.65082 * 90.02189 * 15 12 2 17 17 C 1.54912 * 104.83261 * 203.86262 * 16 15 12 18 18 C 1.55155 * 101.57968 * 322.99067 * 17 16 15 19 19 H 1.09000 * 110.72417 * 276.96258 * 18 17 16 20 20 C 1.53003 * 110.71915 * 153.86365 * 18 17 16 21 21 N 1.46904 * 109.46605 * 66.45490 * 20 18 17 22 22 C 1.47024 * 125.64411 * 269.71176 * 15 12 2 23 23 H 1.08994 * 109.47007 * 269.99690 * 1 2 3 24 24 H 1.09005 * 109.46718 * 29.99508 * 1 2 3 25 25 H 1.08997 * 109.47060 * 149.99569 * 1 2 3 26 26 H 1.09008 * 109.46584 * 35.00255 * 3 2 1 27 27 H 1.08995 * 109.47613 * 154.99796 * 3 2 1 28 28 H 0.96997 * 120.00234 * 180.02562 * 7 6 4 29 29 H 1.09002 * 110.36518 * 322.69831 * 16 15 12 30 30 H 1.08995 * 110.36673 * 84.90941 * 16 15 12 31 31 H 1.08997 * 111.00012 * 81.06132 * 17 16 15 32 32 H 1.08992 * 111.00287 * 204.87830 * 17 16 15 33 33 H 1.08997 * 109.47286 * 186.45095 * 20 18 17 34 34 H 1.08994 * 109.47243 * 306.45645 * 20 18 17 35 35 H 1.00903 * 110.99641 * 180.02562 * 21 20 18 36 36 H 1.00899 * 110.99741 * 303.94777 * 21 20 18 37 37 H 1.08995 * 109.88316 * 298.62155 * 22 15 12 38 38 H 1.09002 * 109.88101 * 59.79050 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9288 1.1936 -2.2332 6 6 2.9999 2.9509 -1.6662 7 7 3.1258 3.3844 -2.9014 8 14 3.7129 3.9408 -0.2516 9 1 5.1101 3.5062 0.0018 10 1 3.6990 5.3840 -0.6010 11 1 2.8964 3.7190 0.9687 12 16 2.2929 -1.4343 -0.0006 13 8 1.4112 -2.4067 0.5435 14 8 3.5759 -1.1570 0.5439 15 7 2.5380 -1.8581 -1.5826 16 6 3.7029 -1.4795 -2.4030 17 6 3.2005 -1.5599 -3.8662 18 6 2.2600 -2.7924 -3.8052 19 1 2.8289 -3.7170 -3.9036 20 6 1.1820 -2.7048 -4.8874 21 7 1.8079 -2.8145 -6.2119 22 6 1.6330 -2.6797 -2.3996 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6502 2.0042 0.5895 27 1 3.1858 1.1176 0.4343 28 1 3.5893 4.2180 -3.0780 29 1 4.0198 -0.4638 -2.1661 30 1 4.5232 -2.1791 -2.2428 31 1 2.6487 -0.6606 -4.1397 32 1 4.0278 -1.7327 -4.5544 33 1 0.4673 -3.5170 -4.7550 34 1 0.6644 -1.7488 -4.8082 35 1 1.1161 -2.7589 -6.9444 36 1 2.5208 -2.1110 -6.3343 37 1 1.5322 -3.6711 -1.9581 38 1 0.6563 -2.2004 -2.4667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118237609.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:19 Heat of formation + Delta-G solvation = -73.584672 kcal Electronic energy + Delta-G solvation = -21277.426087 eV Core-core repulsion = 18088.520482 eV Total energy + Delta-G solvation = -3188.905605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.55611 -36.73235 -35.63789 -35.29441 -34.49043 -32.48433 -30.09859 -29.00683 -28.40774 -25.20611 -24.10945 -22.24590 -21.71219 -20.04089 -18.43824 -17.46882 -17.00787 -16.67687 -16.11990 -15.75580 -15.34199 -14.38965 -14.22471 -13.98033 -13.56250 -13.27409 -13.11586 -12.80360 -12.60881 -12.48402 -12.43779 -12.11755 -11.83336 -11.62407 -11.39961 -11.26314 -11.13518 -10.89149 -10.75924 -10.57713 -10.50000 -10.39445 -10.24404 -9.63269 -8.75778 -8.69816 -8.61582 -8.11457 -6.20941 -4.20994 1.16485 3.23342 3.29939 3.33958 3.43595 4.07165 4.31520 4.38467 4.67415 4.88335 5.02202 5.05941 5.13374 5.45715 5.47801 5.57929 5.67722 5.71314 5.74936 5.97332 5.99689 6.11256 6.15472 6.19469 6.29441 6.40414 6.55035 6.59933 6.75048 6.82873 7.06551 7.09325 7.36885 7.37227 7.50784 8.36766 8.82627 9.40343 10.91113 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015844 B = 0.008068 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.824430 B = 3469.841894 C = 4500.931415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.992 5.992 3 C 0.212 3.788 4 C -0.540 4.540 5 H 0.081 0.919 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.868 3.132 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.264 1.264 12 S 2.802 3.198 13 O -0.994 6.994 14 O -0.977 6.977 15 N -1.013 6.013 16 C 0.125 3.875 17 C -0.124 4.124 18 C -0.096 4.096 19 H 0.088 0.912 20 C 0.070 3.930 21 N -0.852 5.852 22 C 0.131 3.869 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.042 0.958 28 H 0.265 0.735 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.339 0.661 36 H 0.343 0.657 37 H 0.065 0.935 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.585 -9.383 -2.766 10.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.833 5.833 3 C 0.089 3.911 4 C -0.579 4.579 5 H 0.099 0.901 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.695 3.305 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.189 1.189 12 S 2.812 3.188 13 O -0.979 6.979 14 O -0.961 6.961 15 N -0.852 5.852 16 C 0.000 4.000 17 C -0.163 4.163 18 C -0.116 4.116 19 H 0.106 0.894 20 C -0.061 4.061 21 N -0.381 5.381 22 C 0.004 3.996 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.083 0.917 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.025 -10.406 -1.743 10.976 hybrid contribution -0.174 1.958 0.050 1.966 sum -3.199 -8.448 -1.693 9.191 Atomic orbital electron populations 1.21239 0.79723 1.02396 1.00654 1.57504 1.14370 1.22783 1.88612 1.19614 0.92046 0.80936 0.98534 1.21445 1.37136 1.07467 0.91864 0.90061 1.24845 0.95301 0.97073 0.95448 1.69878 1.42358 1.22037 1.18797 0.86961 0.80588 0.79668 0.83290 1.19687 1.21041 1.18859 1.01249 0.72940 0.72489 0.72130 1.93537 1.67363 1.60148 1.76804 1.93562 1.40894 1.85316 1.76344 1.58995 1.30662 1.64963 1.30575 1.21932 0.86896 1.01588 0.89559 1.22821 0.99173 0.97858 0.96403 1.22254 0.96753 0.99819 0.92809 0.89385 1.21762 0.95648 1.00107 0.88619 1.58750 1.18079 1.57642 1.03649 1.21577 0.92836 0.94550 0.90626 0.93633 0.90643 0.92714 0.94611 0.93963 0.92507 0.88875 0.92338 0.90007 0.90455 0.91087 0.94791 0.84893 0.84401 0.91657 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.80 10.31 59.84 0.62 2.42 16 2 N -0.99 -20.17 3.23 -123.06 -0.40 -20.57 16 3 C 0.21 4.93 4.48 -5.19 -0.02 4.91 16 4 C -0.54 -13.95 9.89 -34.44 -0.34 -14.29 16 5 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 6 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 7 N -0.89 -25.25 13.96 55.43 0.77 -24.48 16 8 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 12 S 2.80 56.24 6.31 -107.50 -0.68 55.57 16 13 O -0.99 -20.44 16.79 -57.17 -0.96 -21.40 16 14 O -0.98 -22.31 16.28 -57.17 -0.93 -23.24 16 15 N -1.01 -17.68 3.76 -111.42 -0.42 -18.10 16 16 C 0.13 2.12 6.98 -2.53 -0.02 2.10 16 17 C -0.12 -1.76 5.72 -24.58 -0.14 -1.90 16 18 C -0.10 -1.21 3.20 -88.78 -0.28 -1.49 16 19 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 20 C 0.07 0.78 6.14 -3.82 -0.02 0.76 16 21 N -0.85 -8.73 9.62 -10.37 -0.10 -8.83 16 22 C 0.13 1.88 6.58 -3.06 -0.02 1.86 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 25 H 0.05 0.82 7.79 -51.93 -0.40 0.42 16 26 H 0.04 0.81 7.16 -51.92 -0.37 0.44 16 27 H 0.04 1.02 6.34 -51.93 -0.33 0.70 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.09 1.84 8.10 -51.93 -0.42 1.42 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.33 8.02 -51.93 -0.42 0.91 16 32 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.41 8.10 -51.93 -0.42 -0.01 16 35 H 0.34 2.89 9.08 -39.29 -0.36 2.54 16 36 H 0.34 3.49 8.19 -39.29 -0.32 3.17 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.83 7.82 -51.93 -0.41 0.43 16 LS Contribution 320.81 15.07 4.83 4.83 Total: -1.00 -31.00 320.81 -8.87 -39.86 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.99 Total: 4.20 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -0.33 Total: -3.68 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -0.14 Total: -71.97 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -1.89 Total: -44.64 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Atomic # 16 Polarization: 56.24 SS G_CDS: -0.68 Total: 55.57 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.00 -8.87 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118237609.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.721 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds