Wall clock time and date at job start Mon Mar 30 2020 02:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.46504 * 120.00051 * 2 1 4 4 C 1.50693 * 109.47172 * 274.99833 * 3 2 1 5 5 H 1.08000 * 119.99929 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00099 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00341 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00093 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47205 * 89.99726 * 8 6 4 10 10 H 1.48495 * 109.47322 * 209.99992 * 8 6 4 11 11 H 1.48502 * 109.47122 * 329.99662 * 8 6 4 12 12 S 1.65606 * 120.00129 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40008 * 336.45751 * 12 2 1 14 14 O 1.42098 * 106.40370 * 203.53936 * 12 2 1 15 15 N 1.65595 * 107.22013 * 89.99663 * 12 2 1 16 16 C 1.46925 * 120.63264 * 269.72636 * 15 12 2 17 17 C 1.52761 * 109.00629 * 233.58452 * 16 15 12 18 18 C 1.53049 * 109.38118 * 305.58347 * 17 16 15 19 19 N 1.46901 * 109.44896 * 181.25597 * 18 17 16 20 20 C 1.53038 * 109.53520 * 61.24312 * 18 17 16 21 21 C 1.46933 * 120.62849 * 90.00117 * 15 12 2 22 22 H 1.08998 * 109.47302 * 269.99851 * 1 2 3 23 23 H 1.09005 * 109.47350 * 29.99843 * 1 2 3 24 24 H 1.08996 * 109.47412 * 149.99906 * 1 2 3 25 25 H 1.08996 * 109.47155 * 35.00396 * 3 2 1 26 26 H 1.09007 * 109.47086 * 154.99904 * 3 2 1 27 27 H 0.96998 * 120.00080 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.58679 * 353.41272 * 16 15 12 29 29 H 1.09000 * 109.58887 * 113.84231 * 16 15 12 30 30 H 1.09001 * 109.56870 * 185.55054 * 17 16 15 31 31 H 1.08996 * 109.36683 * 65.49385 * 17 16 15 32 32 H 1.08995 * 109.45784 * 301.22004 * 18 17 16 33 33 H 1.00903 * 111.00097 * 59.93484 * 19 18 17 34 34 H 1.00901 * 111.00047 * 183.89390 * 19 18 17 35 35 H 1.08998 * 109.49523 * 178.68402 * 20 18 17 36 36 H 1.08998 * 109.50031 * 58.58447 * 20 18 17 37 37 H 1.09001 * 109.58300 * 246.15571 * 21 15 12 38 38 H 1.09000 * 109.58498 * 6.44033 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9282 1.1938 -2.2331 6 6 2.9997 2.9508 -1.6663 7 7 3.1249 3.3848 -2.9015 8 14 3.7138 3.9402 -0.2519 9 1 5.1111 3.5054 0.0006 10 1 3.6999 5.3836 -0.6008 11 1 2.8980 3.7183 0.9690 12 16 2.2930 -1.4342 -0.0006 13 8 1.4113 -2.4068 0.5434 14 8 3.5759 -1.1571 0.5439 15 7 2.5380 -1.8581 -1.5826 16 6 1.5568 -2.6868 -2.2961 17 6 2.2711 -3.8949 -2.8994 18 6 3.4376 -3.4147 -3.7661 19 7 4.1070 -4.5740 -4.3711 20 6 4.4361 -2.6444 -2.8991 21 6 3.7437 -1.4175 -2.2974 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 1.6501 2.0043 0.5895 26 1 3.1857 1.1177 0.4344 27 1 3.5884 4.2184 -3.0780 28 1 0.7907 -3.0274 -1.5996 29 1 1.0958 -2.1029 -3.0928 30 1 1.5721 -4.4635 -3.5128 31 1 2.6503 -4.5282 -2.0975 32 1 3.0604 -2.7617 -4.5530 33 1 3.4682 -5.0996 -4.9489 34 1 4.9193 -4.2885 -4.8972 35 1 5.2779 -2.3229 -3.5122 36 1 4.7949 -3.2894 -2.0971 37 1 3.4646 -0.7280 -3.0942 38 1 4.4189 -0.9185 -1.6022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118237765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:10 Heat of formation + Delta-G solvation = -75.006827 kcal Electronic energy + Delta-G solvation = -21386.468150 eV Core-core repulsion = 18197.500876 eV Total energy + Delta-G solvation = -3188.967274 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.50061 -36.78060 -35.62292 -35.28113 -34.19927 -32.46490 -30.90786 -29.28184 -28.41590 -25.18506 -23.22425 -23.12306 -21.87858 -20.10468 -18.29765 -17.48187 -16.81299 -16.74461 -15.88996 -15.45268 -15.18116 -14.72298 -14.33112 -14.15955 -13.79189 -13.45897 -13.08460 -13.00017 -12.55753 -12.41241 -12.14259 -11.95736 -11.82986 -11.50446 -11.42738 -11.38099 -11.24628 -10.95492 -10.79812 -10.55112 -10.38060 -10.29299 -10.22797 -9.61814 -8.74100 -8.69547 -8.65309 -8.09555 -6.18899 -4.19218 1.19597 3.24605 3.31090 3.35079 3.41674 4.05245 4.33031 4.41346 4.78331 4.87090 4.96549 5.14691 5.26888 5.38870 5.47359 5.52247 5.62967 5.76725 5.85785 5.87837 5.99977 6.02582 6.14357 6.19378 6.28923 6.41685 6.54901 6.57009 6.80920 6.92883 7.10141 7.11294 7.37147 7.39500 7.52582 8.38577 8.84713 9.42242 10.93304 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.007412 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.949564 B = 3776.849167 C = 4550.312808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.993 5.993 3 C 0.213 3.787 4 C -0.540 4.540 5 H 0.081 0.919 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.868 3.132 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.264 1.264 12 S 2.789 3.211 13 O -0.996 6.996 14 O -0.979 6.979 15 N -1.000 6.000 16 C 0.122 3.878 17 C -0.121 4.121 18 C 0.092 3.908 19 N -0.849 5.849 20 C -0.124 4.124 21 C 0.128 3.872 22 H 0.044 0.956 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.042 0.958 27 H 0.265 0.735 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.338 0.662 34 H 0.340 0.660 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 -11.095 -1.781 11.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.834 5.834 3 C 0.089 3.911 4 C -0.579 4.579 5 H 0.099 0.901 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.695 3.305 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.188 1.188 12 S 2.798 3.202 13 O -0.980 6.980 14 O -0.964 6.964 15 N -0.839 5.839 16 C -0.004 4.004 17 C -0.161 4.161 18 C -0.019 4.019 19 N -0.379 5.379 20 C -0.164 4.164 21 C 0.002 3.998 22 H 0.063 0.937 23 H 0.094 0.906 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.670 -11.641 -0.352 11.765 hybrid contribution 0.033 1.422 -0.825 1.644 sum -1.637 -10.219 -1.176 10.416 Atomic orbital electron populations 1.21235 0.79733 1.02443 1.00623 1.57482 1.14358 1.22752 1.88777 1.19604 0.92036 0.80943 0.98499 1.21444 1.37067 1.07478 0.91869 0.90091 1.24847 0.95329 0.97085 0.95430 1.69889 1.42422 1.22037 1.18834 0.86961 0.80579 0.79673 0.83283 1.19690 1.21052 1.18843 1.01644 0.72983 0.72566 0.72991 1.93528 1.67405 1.60026 1.77076 1.93548 1.40789 1.85334 1.76693 1.58043 1.29618 1.64385 1.31849 1.21238 0.90805 0.91199 0.97189 1.21790 0.96889 0.97679 0.99740 1.21292 0.94323 0.90666 0.95651 1.58748 1.11936 1.25485 1.41702 1.21922 0.97616 0.97222 0.99634 1.21355 0.85288 0.95185 0.97941 0.93691 0.90611 0.92688 0.94648 0.93974 0.92511 0.89295 0.91624 0.91357 0.90853 0.94340 0.85037 0.84756 0.91165 0.91041 0.90521 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.78 10.31 59.84 0.62 2.40 16 2 N -0.99 -20.06 3.23 -123.06 -0.40 -20.46 16 3 C 0.21 4.93 4.48 -5.19 -0.02 4.91 16 4 C -0.54 -14.01 9.94 -34.44 -0.34 -14.35 16 5 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 6 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.89 -25.58 13.96 55.43 0.77 -24.80 16 8 Si 0.87 20.54 27.47 -169.99 -4.67 15.87 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 12 S 2.79 55.11 6.11 -107.50 -0.66 54.46 16 13 O -1.00 -20.06 15.79 -57.17 -0.90 -20.97 16 14 O -0.98 -22.03 15.28 -57.17 -0.87 -22.90 16 15 N -1.00 -17.11 3.35 -113.76 -0.38 -17.49 16 16 C 0.12 1.72 6.45 -3.93 -0.03 1.70 16 17 C -0.12 -1.50 5.64 -26.83 -0.15 -1.65 16 18 C 0.09 1.13 3.21 -67.67 -0.22 0.91 16 19 N -0.85 -8.78 9.25 -4.63 -0.04 -8.82 16 20 C -0.12 -1.74 5.62 -26.61 -0.15 -1.89 16 21 C 0.13 2.18 6.48 -3.71 -0.02 2.16 16 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.08 1.26 8.07 -51.93 -0.42 0.85 16 24 H 0.05 0.81 7.79 -51.93 -0.40 0.40 16 25 H 0.04 0.81 7.17 -51.93 -0.37 0.43 16 26 H 0.04 1.02 6.34 -51.92 -0.33 0.69 16 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.09 1.22 6.91 -51.93 -0.36 0.86 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.34 2.89 9.04 -39.29 -0.36 2.53 16 34 H 0.34 3.09 8.99 -39.29 -0.35 2.74 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.10 1.82 6.92 -51.93 -0.36 1.46 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -31.13 315.50 -8.73 -39.87 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.92 Total: 4.34 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.41 Total: -3.85 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -0.05 Total: -71.57 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -1.78 Total: -43.87 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 16 Polarization: 55.11 SS G_CDS: -0.66 Total: 54.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.13 -8.73 -39.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118237765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.140 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds