Wall clock time and date at job start Mon Mar 30 2020 02:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.46504 * 120.00051 * 2 1 4 4 C 1.50693 * 109.47172 * 274.99833 * 3 2 1 5 5 H 1.08000 * 119.99929 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00099 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00341 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00093 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47205 * 89.99726 * 8 6 4 10 10 H 1.48495 * 109.47322 * 209.99992 * 8 6 4 11 11 H 1.48502 * 109.47122 * 329.99662 * 8 6 4 12 12 S 1.65606 * 120.00129 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40008 * 336.45751 * 12 2 1 14 14 O 1.42098 * 106.40370 * 203.53936 * 12 2 1 15 15 N 1.65595 * 107.22013 * 89.99663 * 12 2 1 16 16 C 1.46925 * 120.63264 * 269.72636 * 15 12 2 17 17 C 1.52761 * 109.00629 * 233.58452 * 16 15 12 18 18 C 1.53049 * 109.38118 * 305.58347 * 17 16 15 19 19 N 1.46901 * 109.44896 * 181.25597 * 18 17 16 20 20 C 1.53038 * 109.53520 * 61.24312 * 18 17 16 21 21 C 1.46933 * 120.62849 * 90.00117 * 15 12 2 22 22 H 1.08998 * 109.47302 * 269.99851 * 1 2 3 23 23 H 1.09005 * 109.47350 * 29.99843 * 1 2 3 24 24 H 1.08996 * 109.47412 * 149.99906 * 1 2 3 25 25 H 1.08996 * 109.47155 * 35.00396 * 3 2 1 26 26 H 1.09007 * 109.47086 * 154.99904 * 3 2 1 27 27 H 0.96998 * 120.00080 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.58679 * 353.41272 * 16 15 12 29 29 H 1.09000 * 109.58887 * 113.84231 * 16 15 12 30 30 H 1.09001 * 109.56870 * 185.55054 * 17 16 15 31 31 H 1.08996 * 109.36683 * 65.49385 * 17 16 15 32 32 H 1.08995 * 109.45784 * 301.22004 * 18 17 16 33 33 H 1.00903 * 111.00097 * 59.93484 * 19 18 17 34 34 H 1.00901 * 111.00047 * 183.89390 * 19 18 17 35 35 H 1.08998 * 109.49523 * 178.68402 * 20 18 17 36 36 H 1.08998 * 109.50031 * 58.58447 * 20 18 17 37 37 H 1.09001 * 109.58300 * 246.15571 * 21 15 12 38 38 H 1.09000 * 109.58498 * 6.44033 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9282 1.1938 -2.2331 6 6 2.9997 2.9508 -1.6663 7 7 3.1249 3.3848 -2.9015 8 14 3.7138 3.9402 -0.2519 9 1 5.1111 3.5054 0.0006 10 1 3.6999 5.3836 -0.6008 11 1 2.8980 3.7183 0.9690 12 16 2.2930 -1.4342 -0.0006 13 8 1.4113 -2.4068 0.5434 14 8 3.5759 -1.1571 0.5439 15 7 2.5380 -1.8581 -1.5826 16 6 1.5568 -2.6868 -2.2961 17 6 2.2711 -3.8949 -2.8994 18 6 3.4376 -3.4147 -3.7661 19 7 4.1070 -4.5740 -4.3711 20 6 4.4361 -2.6444 -2.8991 21 6 3.7437 -1.4175 -2.2974 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 1.6501 2.0043 0.5895 26 1 3.1857 1.1177 0.4344 27 1 3.5884 4.2184 -3.0780 28 1 0.7907 -3.0274 -1.5996 29 1 1.0958 -2.1029 -3.0928 30 1 1.5721 -4.4635 -3.5128 31 1 2.6503 -4.5282 -2.0975 32 1 3.0604 -2.7617 -4.5530 33 1 3.4682 -5.0996 -4.9489 34 1 4.9193 -4.2885 -4.8972 35 1 5.2779 -2.3229 -3.5122 36 1 4.7949 -3.2894 -2.0971 37 1 3.4646 -0.7280 -3.0942 38 1 4.4189 -0.9185 -1.6022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118237765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:10 Heat of formation + Delta-G solvation = -99.963715 kcal Electronic energy + Delta-G solvation = -21387.550362 eV Core-core repulsion = 18197.500876 eV Total energy + Delta-G solvation = -3190.049486 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.125 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.65381 -38.41578 -37.29169 -36.93014 -35.29818 -34.47704 -32.09270 -30.34966 -30.24423 -26.78679 -24.38568 -24.35931 -23.72139 -21.27504 -19.77413 -19.19613 -18.58526 -18.35570 -17.37611 -16.53336 -16.33652 -16.16205 -15.85214 -15.45145 -15.29893 -14.85748 -14.56721 -14.37077 -14.20817 -14.09624 -13.48072 -13.41272 -13.27480 -13.15704 -13.01199 -12.94329 -12.64636 -12.41014 -12.31736 -12.14122 -11.99658 -11.64522 -11.62328 -11.42601 -10.75898 -10.03669 -9.73445 -9.58206 -8.27501 -6.30940 -0.35609 1.37186 1.40937 1.47637 1.91403 2.35442 2.51097 3.07195 3.31978 3.49336 3.70189 3.83973 4.02192 4.19163 4.23795 4.38165 4.43466 4.63823 4.70470 4.74503 4.76263 4.81563 4.85931 4.92117 4.94773 5.01947 5.17649 5.26780 5.36587 5.38165 5.46887 5.59007 5.85896 6.26835 6.32697 6.66628 6.73694 7.33199 8.87168 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.007412 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.949564 B = 3776.849167 C = 4550.312808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.000 6.000 3 C 0.219 3.781 4 C -0.531 4.531 5 H 0.056 0.944 6 C 0.025 3.975 7 N -0.934 5.934 8 Si 0.920 3.080 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.246 1.246 12 S 2.796 3.204 13 O -0.999 6.999 14 O -1.011 7.011 15 N -0.999 5.999 16 C 0.115 3.885 17 C -0.117 4.117 18 C 0.096 3.904 19 N -0.849 5.849 20 C -0.119 4.119 21 C 0.130 3.870 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.033 0.967 27 H 0.266 0.734 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.351 0.649 34 H 0.348 0.652 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.726 -12.096 -1.641 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.840 5.840 3 C 0.094 3.906 4 C -0.570 4.570 5 H 0.074 0.926 6 C -0.174 4.174 7 N -0.574 5.574 8 Si 0.744 3.256 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.169 1.169 12 S 2.806 3.194 13 O -0.983 6.983 14 O -0.995 6.995 15 N -0.840 5.840 16 C -0.011 4.011 17 C -0.157 4.157 18 C -0.015 4.015 19 N -0.381 5.381 20 C -0.159 4.159 21 C 0.004 3.996 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.307 -12.668 -0.202 12.878 hybrid contribution 0.173 1.653 -0.935 1.907 sum -2.134 -11.015 -1.137 11.278 Atomic orbital electron populations 1.21491 0.77740 1.03405 1.02212 1.57474 1.15809 1.21643 1.89111 1.19373 0.92248 0.82396 0.96596 1.21582 1.35862 1.06867 0.92682 0.92582 1.25566 0.95963 0.98355 0.97512 1.70002 1.43908 1.22765 1.20765 0.86124 0.79954 0.78359 0.81174 1.19754 1.20600 1.16941 1.01270 0.72256 0.72387 0.73469 1.93516 1.67291 1.59876 1.77624 1.93502 1.42367 1.85734 1.77890 1.57900 1.30283 1.64587 1.31217 1.21518 0.90508 0.91644 0.97413 1.21772 0.97364 0.96777 0.99755 1.21165 0.93797 0.91183 0.95395 1.58669 1.12454 1.24588 1.42400 1.21863 0.98291 0.95877 0.99833 1.21270 0.85115 0.96384 0.96805 0.91784 0.90794 0.90670 0.93662 0.94884 0.92461 0.88701 0.90693 0.88437 0.91870 0.94241 0.83538 0.83823 0.89851 0.91763 0.92013 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.08 10.31 127.77 1.32 4.40 16 2 N -1.00 -39.61 3.23 -543.25 -1.75 -41.37 16 3 C 0.22 10.02 4.48 85.63 0.38 10.40 16 4 C -0.53 -27.75 9.94 25.60 0.25 -27.50 16 5 H 0.06 3.15 8.06 -2.91 -0.02 3.13 16 6 C 0.03 1.38 5.47 84.65 0.46 1.85 16 7 N -0.93 -54.25 13.96 21.45 0.30 -53.96 16 8 Si 0.92 41.89 27.47 68.60 1.88 43.77 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 12 S 2.80 109.33 6.11 -56.49 -0.34 108.98 16 13 O -1.00 -38.92 15.79 -128.00 -2.02 -40.95 16 14 O -1.01 -45.83 15.28 -128.00 -1.96 -47.78 16 15 N -1.00 -33.85 3.35 -513.84 -1.72 -35.57 16 16 C 0.11 3.05 6.45 86.22 0.56 3.60 16 17 C -0.12 -2.64 5.64 30.53 0.17 -2.46 16 18 C 0.10 2.18 3.21 44.94 0.14 2.32 16 19 N -0.85 -15.47 9.25 -168.56 -1.56 -17.03 16 20 C -0.12 -3.25 5.62 30.67 0.17 -3.08 16 21 C 0.13 4.51 6.48 86.36 0.56 5.07 16 22 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.07 2.37 8.07 -2.38 -0.02 2.35 16 24 H 0.07 2.06 7.79 -2.39 -0.02 2.04 16 25 H 0.05 1.99 7.17 -2.39 -0.02 1.97 16 26 H 0.03 1.59 6.34 -2.38 -0.02 1.57 16 27 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.09 2.41 6.91 -2.39 -0.02 2.40 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.35 4.96 9.04 -89.69 -0.81 4.15 16 34 H 0.35 5.51 8.99 -89.69 -0.81 4.71 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.07 2.82 6.92 -2.39 -0.02 2.80 16 Total: -1.00 -65.98 315.50 -3.76 -69.74 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.61 Total: 19.57 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 4.02 Total: -5.41 kcal Atomic # 7 Polarization: -143.19 SS G_CDS: -4.73 Total: -147.92 kcal Atomic # 8 Polarization: -84.75 SS G_CDS: -3.98 Total: -88.73 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.77 kcal Atomic # 16 Polarization: 109.33 SS G_CDS: -0.34 Total: 108.98 kcal Total: -65.98 -3.76 -69.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118237765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.224 kcal (2) G-P(sol) polarization free energy of solvation -65.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds