Wall clock time and date at job start Mon Mar 30 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47469 * 161.54842 * 3 2 1 5 5 N 1.46900 * 109.47308 * 179.68080 * 4 3 2 6 6 C 1.46900 * 110.99505 * 288.54801 * 5 4 3 7 7 C 1.50710 * 109.46484 * 160.31095 * 6 5 4 8 8 H 1.07997 * 119.99992 * 4.80312 * 7 6 5 9 9 C 1.37875 * 119.99698 * 184.79597 * 7 6 5 10 10 N 1.31518 * 119.99941 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 120.00220 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47265 * 89.99389 * 11 9 7 13 13 H 1.48492 * 109.47263 * 209.99766 * 11 9 7 14 14 H 1.48503 * 109.47081 * 329.99701 * 11 9 7 15 15 C 1.46903 * 110.99775 * 164.59765 * 5 4 3 16 16 C 1.50699 * 109.47233 * 293.95272 * 15 5 4 17 17 C 1.38896 * 120.04694 * 269.98194 * 16 15 5 18 18 N 1.39665 * 120.06007 * 0.04099 * 17 16 15 19 19 C 1.38907 * 119.87631 * 180.02562 * 17 16 15 20 20 C 1.38141 * 119.97388 * 359.97358 * 19 17 16 21 21 C 1.38226 * 120.10051 * 0.02562 * 20 19 17 22 22 C 1.38301 * 120.05157 * 90.00008 * 16 15 5 23 23 F 1.35094 * 119.98624 * 359.95527 * 22 16 15 24 24 H 1.09006 * 109.46997 * 41.54915 * 3 2 1 25 25 H 1.08995 * 109.47220 * 281.55343 * 3 2 1 26 26 H 1.08994 * 109.46746 * 59.67520 * 4 3 2 27 27 H 1.09001 * 109.46902 * 299.68123 * 4 3 2 28 28 H 1.08999 * 109.47292 * 280.30380 * 6 5 4 29 29 H 1.08994 * 109.47213 * 40.31467 * 6 5 4 30 30 H 0.96996 * 119.99891 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.46666 * 173.95317 * 15 5 4 32 32 H 1.08997 * 109.47179 * 53.95282 * 15 5 4 33 33 H 0.97006 * 119.99623 * 180.02562 * 18 17 16 34 34 H 0.96996 * 120.00489 * 359.97438 * 18 17 16 35 35 H 1.07998 * 120.01282 * 180.25149 * 19 17 16 36 36 H 1.07998 * 119.95257 * 180.02562 * 20 19 17 37 37 H 1.08000 * 119.94162 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.3692 -0.4565 5 7 4.5864 1.3722 -0.4492 6 6 5.1059 1.3736 0.9249 7 6 6.5360 0.8978 0.9216 8 1 7.0358 0.6963 -0.0142 9 6 7.2060 0.7200 2.1134 10 7 8.4541 0.3054 2.1106 11 14 6.3411 1.0682 3.7322 12 1 5.6708 -0.1673 4.2110 13 1 7.3370 1.5133 4.7397 14 1 5.3280 2.1354 3.5326 15 6 5.1143 2.5109 -1.2127 16 6 4.7634 2.3452 -2.6689 17 6 5.6296 1.6720 -3.5208 18 7 6.8267 1.1468 -3.0291 19 6 5.3029 1.5219 -4.8625 20 6 4.1179 2.0414 -5.3466 21 6 3.2567 2.7111 -4.4979 22 6 3.5786 2.8636 -3.1591 23 9 2.7346 3.5182 -2.3319 24 1 2.9717 -0.7683 -0.6817 25 1 2.9714 -0.2050 1.0068 26 1 2.7491 2.1387 0.2217 27 1 2.7587 1.5723 -1.4656 28 1 5.0604 2.3846 1.3296 29 1 4.5029 0.7076 1.5419 30 1 8.9253 0.1799 2.9491 31 1 6.1979 2.5512 -1.1024 32 1 4.6761 3.4352 -0.8363 33 1 7.4311 0.6771 -3.6250 34 1 7.0541 1.2523 -2.0921 35 1 5.9728 0.9953 -5.5260 36 1 3.8641 1.9241 -6.3897 37 1 2.3307 3.1159 -4.8790 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140876503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:12 Heat of formation + Delta-G solvation = 12.695845 kcal Electronic energy + Delta-G solvation = -21504.823744 eV Core-core repulsion = 18196.588382 eV Total energy + Delta-G solvation = -3308.235362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.73959 -39.35082 -37.39472 -36.10456 -34.18837 -32.72853 -31.79401 -30.41578 -28.56539 -27.49841 -25.30383 -23.05383 -22.10243 -21.41148 -19.87645 -17.61507 -17.38388 -17.35438 -16.74019 -15.85924 -15.57914 -14.95831 -14.90935 -14.83664 -14.45815 -14.27697 -13.93301 -13.55516 -12.96297 -12.70362 -12.66761 -12.60092 -12.44518 -12.19031 -11.97327 -11.82679 -11.44094 -11.05244 -10.92090 -10.72522 -10.57955 -10.34547 -10.20234 -9.97490 -9.46407 -8.66925 -8.48964 -7.57659 -7.32017 -6.16879 -4.14551 1.39491 1.68944 2.92531 2.97997 3.21267 3.30262 3.32123 3.83614 4.07357 4.16109 4.32864 4.62581 4.86800 4.98824 5.13712 5.17407 5.20654 5.30369 5.44481 5.55152 5.77223 5.78876 5.87950 6.09791 6.14176 6.21810 6.30825 6.34587 6.47787 6.56704 6.67407 6.80759 7.05190 7.46187 7.67097 7.74055 7.79014 7.82037 8.08807 8.51402 8.89202 9.45251 10.95663 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.006770 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.316196 B = 4134.673344 C = 5482.733627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.219 3.781 3 C -0.027 4.027 4 C 0.054 3.946 5 N -0.516 5.516 6 C 0.155 3.845 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.071 3.929 10 N -0.897 5.897 11 Si 0.871 3.129 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.109 3.891 16 C -0.188 4.188 17 C 0.272 3.728 18 N -0.859 5.859 19 C -0.218 4.218 20 C -0.047 4.047 21 C -0.225 4.225 22 C 0.144 3.856 23 F -0.141 7.141 24 H 0.117 0.883 25 H 0.112 0.888 26 H 0.034 0.966 27 H 0.076 0.924 28 H -0.007 1.007 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.396 0.604 34 H 0.415 0.585 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.954 2.816 -11.753 13.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.099 4.099 3 C -0.068 4.068 4 C -0.076 4.076 5 N -0.240 5.240 6 C 0.029 3.971 7 C -0.546 4.546 8 H 0.098 0.902 9 C -0.131 4.131 10 N -0.536 5.536 11 Si 0.698 3.302 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.019 4.019 16 C -0.194 4.194 17 C 0.162 3.838 18 N -0.397 5.397 19 C -0.242 4.242 20 C -0.067 4.067 21 C -0.246 4.246 22 C 0.124 3.876 23 F -0.119 7.119 24 H 0.135 0.865 25 H 0.130 0.870 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.011 0.989 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.055 0.945 33 H 0.224 0.776 34 H 0.248 0.752 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.350 2.367 -11.772 13.583 hybrid contribution -0.026 0.770 1.648 1.820 sum -6.376 3.137 -10.123 12.368 Atomic orbital electron populations 1.81153 1.13173 1.09209 1.09847 1.29408 0.95445 0.92611 0.92408 1.19376 0.80248 1.01206 1.05954 1.22041 0.90557 0.93787 1.01226 1.62000 1.03982 1.41494 1.16503 1.20328 0.97016 0.95486 0.84249 1.20915 0.94430 1.44706 0.94574 0.90214 1.24865 0.94741 0.94680 0.98800 1.69867 1.10190 1.46452 1.27093 0.86935 0.79840 0.79209 0.84234 1.20072 1.21238 1.19226 1.20666 1.01588 0.92068 0.87565 1.19338 0.95689 1.07329 0.97046 1.17291 0.86060 0.89188 0.91250 1.42837 1.19848 1.62341 1.14662 1.20586 1.00202 1.09420 0.93960 1.20578 0.92642 0.94594 0.98842 1.20722 1.02948 1.08824 0.92150 1.17285 0.88017 0.94479 0.87823 1.91457 1.69821 1.78700 1.71972 0.86522 0.86980 0.94744 0.90580 0.98945 0.95297 0.92575 0.88713 0.94527 0.77613 0.75172 0.85981 0.85764 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.83 18.54 42.15 0.78 -7.05 16 2 C 0.22 3.30 15.43 -20.76 -0.32 2.98 16 3 C -0.03 -0.38 5.76 -29.52 -0.17 -0.55 16 4 C 0.05 0.85 4.31 -3.83 -0.02 0.84 16 5 N -0.52 -9.23 4.38 -237.52 -1.04 -10.27 16 6 C 0.16 3.26 3.66 -4.97 -0.02 3.24 16 7 C -0.51 -12.54 9.17 -34.44 -0.32 -12.86 16 8 H 0.08 2.07 6.96 -52.49 -0.37 1.70 16 9 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 10 N -0.90 -25.20 13.96 55.43 0.77 -24.43 16 11 Si 0.87 19.91 27.38 -169.99 -4.65 15.26 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.27 -5.93 6.68 56.52 0.38 -5.56 16 15 C 0.11 1.86 4.35 -4.97 -0.02 1.84 16 16 C -0.19 -2.87 4.96 -104.36 -0.52 -3.39 16 17 C 0.27 3.77 6.73 -83.80 -0.56 3.21 16 18 N -0.86 -11.41 8.99 32.41 0.29 -11.12 16 19 C -0.22 -2.58 9.89 -39.37 -0.39 -2.97 16 20 C -0.05 -0.53 10.04 -39.62 -0.40 -0.93 16 21 C -0.23 -2.84 10.02 -39.47 -0.40 -3.24 16 22 C 0.14 2.13 5.90 -39.45 -0.23 1.89 16 23 F -0.14 -2.20 14.86 2.25 0.03 -2.16 16 24 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 25 H 0.11 1.56 6.50 -51.93 -0.34 1.22 16 26 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 27 H 0.08 1.19 4.64 -51.93 -0.24 0.95 16 28 H -0.01 -0.16 7.39 -51.93 -0.38 -0.54 16 29 H 0.03 0.60 5.37 -51.93 -0.28 0.32 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.09 1.71 5.73 -51.93 -0.30 1.41 16 32 H 0.04 0.64 7.62 -51.93 -0.40 0.24 16 33 H 0.40 4.22 8.84 -40.82 -0.36 3.86 16 34 H 0.41 6.46 5.89 -40.82 -0.24 6.22 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -28.49 312.30 -6.73 -35.23 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.17 Total: 8.00 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -3.46 Total: -8.16 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.81 Total: -52.87 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.03 Total: -2.16 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.65 Total: 15.26 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.49 -6.73 -35.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140876503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.921 kcal (2) G-P(sol) polarization free energy of solvation -28.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds