Wall clock time and date at job start Mon Mar 30 2020 01:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47300 * 2 1 4 4 C 1.46900 * 110.99864 * 297.96351 * 3 2 1 5 5 C 1.50700 * 109.47432 * 288.72720 * 4 3 2 6 6 H 1.08007 * 119.99521 * 1.36339 * 5 4 3 7 7 C 1.37870 * 120.00278 * 181.35951 * 5 4 3 8 8 N 1.31525 * 120.00129 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00124 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47235 * 89.99923 * 9 7 5 11 11 H 1.48503 * 109.46833 * 210.00151 * 9 7 5 12 12 H 1.48496 * 109.46742 * 329.99727 * 9 7 5 13 13 C 1.46901 * 111.00216 * 61.91694 * 3 2 1 14 14 C 1.50697 * 109.46801 * 66.04844 * 13 3 2 15 15 C 1.33999 * 126.90447 * 260.07740 * 14 13 3 16 16 O 1.34439 * 110.15413 * 180.30625 * 15 14 13 17 17 C 1.34884 * 110.88529 * 359.75531 * 16 15 14 18 18 C 1.38910 * 133.37816 * 179.97438 * 17 16 15 19 19 C 1.37808 * 119.99657 * 180.02562 * 18 17 16 20 20 C 1.38962 * 120.66119 * 0.04868 * 19 18 17 21 21 F 1.35102 * 119.88487 * 180.02562 * 20 19 18 22 22 C 1.37903 * 120.22355 * 359.97272 * 20 19 18 23 23 C 1.39440 * 119.58327 * 0.02562 * 22 20 19 24 24 H 1.09005 * 109.46804 * 60.26652 * 1 2 3 25 25 H 1.08997 * 109.47516 * 180.27033 * 1 2 3 26 26 H 1.09002 * 109.46667 * 300.26834 * 1 2 3 27 27 H 1.09002 * 109.47142 * 239.99700 * 2 1 3 28 28 H 1.09000 * 109.46881 * 120.00119 * 2 1 3 29 29 H 1.08995 * 109.47326 * 48.72776 * 4 3 2 30 30 H 1.09001 * 109.47185 * 168.72777 * 4 3 2 31 31 H 0.97002 * 119.99990 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.46824 * 306.05162 * 13 3 2 33 33 H 1.08997 * 109.47166 * 186.04733 * 13 3 2 34 34 H 1.08006 * 124.92521 * 0.06658 * 15 14 13 35 35 H 1.08007 * 120.00827 * 0.03572 * 18 17 16 36 36 H 1.07997 * 119.67506 * 180.02562 * 19 18 17 37 37 H 1.08005 * 120.21446 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5889 2.0956 -1.2113 5 6 2.3478 1.5665 -2.4009 6 1 3.0613 0.7657 -2.2736 7 6 2.1313 2.1046 -3.6517 8 7 2.7940 1.6432 -4.6898 9 14 0.8977 3.4900 -3.8718 10 1 1.5842 4.7957 -3.7017 11 1 0.3066 3.4150 -5.2320 12 1 -0.1783 3.3605 -2.8566 13 6 1.5865 2.0965 1.2100 14 6 2.2473 1.4827 2.4173 15 6 1.7036 0.6077 3.2742 16 8 2.5900 0.2863 4.2326 17 6 3.7583 0.9333 4.0436 18 6 4.9633 0.9481 4.7346 19 6 6.0048 1.7315 4.2865 20 6 5.8642 2.5126 3.1458 21 9 6.8957 3.2743 2.7203 22 6 4.6759 2.5120 2.4462 23 6 3.6156 1.7230 2.8908 24 1 -0.3633 0.5097 -0.8924 25 1 -0.3634 -1.0276 0.0048 26 1 -0.3633 0.5180 0.8876 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5208 1.9402 -1.3633 30 1 1.7884 3.1612 -1.0978 31 1 2.6414 2.0215 -5.5699 32 1 0.5039 2.0186 1.3093 33 1 1.8699 3.1464 1.1351 34 1 0.6978 0.2200 3.2071 35 1 5.0841 0.3457 5.6228 36 1 6.9395 1.7388 4.8275 37 1 4.5669 3.1188 1.5594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141852775.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:44 Heat of formation + Delta-G solvation = -6.016252 kcal Electronic energy + Delta-G solvation = -21207.812773 eV Core-core repulsion = 17866.473242 eV Total energy + Delta-G solvation = -3341.339531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.79419 -42.44146 -37.59503 -37.56828 -33.33498 -32.36878 -30.26794 -29.75726 -29.50394 -27.69429 -24.96937 -23.50923 -22.88109 -22.35330 -20.40269 -19.14307 -17.92656 -17.24105 -16.75635 -16.42341 -16.20461 -15.39050 -15.28703 -15.04668 -14.79129 -14.31249 -14.07234 -13.51912 -13.23319 -13.08340 -12.88329 -12.57858 -12.43178 -11.88973 -11.84021 -11.67812 -11.43355 -11.16874 -10.86174 -10.63795 -10.50424 -10.09847 -10.01623 -9.84934 -9.31554 -8.57135 -8.47068 -8.18539 -7.35367 -6.05364 -4.02288 0.80063 1.16176 2.33488 2.76409 3.26605 3.34392 3.34693 3.53064 4.14819 4.40444 4.46754 4.56977 4.79013 4.95950 5.08188 5.18081 5.27113 5.34869 5.53848 5.58124 5.64462 5.76715 5.81073 5.94966 5.97588 6.06370 6.12390 6.18472 6.30125 6.40381 6.46447 6.62682 6.72983 6.88450 7.01117 7.12600 7.58860 7.86968 8.00619 8.65166 9.04563 9.56125 11.07933 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.005199 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.977140 B = 5384.572235 C = 6400.544340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 N -0.519 5.519 4 C 0.158 3.842 5 C -0.505 4.505 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.112 3.888 14 C -0.144 4.144 15 C 0.003 3.997 16 O -0.193 6.193 17 C 0.038 3.962 18 C -0.083 4.083 19 C -0.130 4.130 20 C 0.077 3.923 21 F -0.138 7.138 22 C -0.089 4.089 23 C -0.083 4.083 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.056 0.944 29 H -0.002 1.002 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.205 0.795 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 -0.716 19.145 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.070 4.070 3 N -0.242 5.242 4 C 0.032 3.968 5 C -0.543 4.543 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.016 4.016 14 C -0.146 4.146 15 C -0.062 4.062 16 O -0.095 6.095 17 C -0.010 4.010 18 C -0.101 4.101 19 C -0.149 4.149 20 C 0.057 3.943 21 F -0.117 7.117 22 C -0.108 4.108 23 C -0.085 4.085 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.015 0.985 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.222 0.778 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.014 -0.840 19.127 19.145 hybrid contribution -1.382 0.961 -0.586 1.783 sum -1.368 0.121 18.540 18.591 Atomic orbital electron populations 1.22423 0.99520 1.01342 1.01687 1.22014 0.91798 0.91084 1.02120 1.62179 1.59155 1.01862 1.00975 1.20263 0.94662 0.93775 0.88086 1.20998 1.23341 1.20341 0.89650 0.90204 1.24887 0.95829 0.96672 0.95915 1.69896 1.41856 1.42641 0.99548 0.86903 0.82242 0.83276 0.77566 1.20178 1.21232 1.19332 1.20498 0.95899 0.97824 0.87404 1.21137 0.92720 1.01634 0.99117 1.23757 0.94962 0.98810 0.88680 1.84003 1.20011 1.58709 1.46753 1.19606 0.87675 0.96425 0.97259 1.19605 0.88541 1.01330 1.00653 1.20803 0.99762 0.97747 0.96547 1.17368 0.85327 0.95522 0.96039 1.91504 1.56826 1.73716 1.89657 1.20562 0.90404 0.99608 1.00189 1.19478 0.94574 0.98895 0.95517 0.91558 0.92921 0.93718 0.89606 0.92597 0.98458 0.96080 0.92688 0.93947 0.90256 0.77797 0.84364 0.83843 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.99 9.28 37.16 0.34 -2.65 16 2 C 0.06 1.06 5.74 -3.83 -0.02 1.03 16 3 N -0.52 -10.36 4.65 -237.52 -1.11 -11.46 16 4 C 0.16 3.67 3.65 -4.98 -0.02 3.66 16 5 C -0.50 -14.08 9.13 -34.44 -0.31 -14.40 16 6 H 0.08 2.46 7.67 -52.48 -0.40 2.06 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 9 Si 0.87 21.16 27.44 -169.99 -4.66 16.49 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.21 6.58 56.52 0.37 -5.83 16 13 C 0.11 1.81 5.30 -4.98 -0.03 1.79 16 14 C -0.14 -2.13 4.95 -102.66 -0.51 -2.64 16 15 C 0.00 0.04 11.17 29.24 0.33 0.37 16 16 O -0.19 -2.56 10.58 3.72 0.04 -2.52 16 17 C 0.04 0.51 7.41 -38.50 -0.29 0.23 16 18 C -0.08 -0.92 10.06 -39.49 -0.40 -1.32 16 19 C -0.13 -1.45 9.99 -39.47 -0.39 -1.84 16 20 C 0.08 1.05 7.29 -39.44 -0.29 0.77 16 21 F -0.14 -1.98 17.26 2.25 0.04 -1.95 16 22 C -0.09 -1.35 10.07 -39.26 -0.40 -1.74 16 23 C -0.08 -1.27 6.38 -105.16 -0.67 -1.94 16 24 H 0.07 1.19 6.24 -51.93 -0.32 0.87 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.60 6.30 -51.93 -0.33 0.28 16 27 H 0.09 1.79 7.16 -51.93 -0.37 1.42 16 28 H 0.06 0.92 6.67 -51.93 -0.35 0.58 16 29 H 0.00 -0.05 5.02 -51.93 -0.26 -0.31 16 30 H 0.02 0.49 7.18 -51.93 -0.37 0.12 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 32 H 0.04 0.62 6.05 -51.93 -0.31 0.31 16 33 H 0.08 1.29 7.87 -51.93 -0.41 0.88 16 34 H 0.21 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.15 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 309.42 15.07 4.66 4.66 Total: -1.00 -31.02 309.42 -7.41 -38.42 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -4.41 Total: -0.16 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -2.75 Total: -16.83 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.33 Total: -38.12 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.66 Total: 16.49 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.02 -7.41 -38.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141852775.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.409 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds