Wall clock time and date at job start Mon Mar 30 2020 01:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47300 * 2 1 4 4 C 1.46900 * 110.99864 * 297.96351 * 3 2 1 5 5 C 1.50700 * 109.47432 * 288.72720 * 4 3 2 6 6 H 1.08007 * 119.99521 * 1.36339 * 5 4 3 7 7 C 1.37870 * 120.00278 * 181.35951 * 5 4 3 8 8 N 1.31525 * 120.00129 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00124 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47235 * 89.99923 * 9 7 5 11 11 H 1.48503 * 109.46833 * 210.00151 * 9 7 5 12 12 H 1.48496 * 109.46742 * 329.99727 * 9 7 5 13 13 C 1.46901 * 111.00216 * 61.91694 * 3 2 1 14 14 C 1.50697 * 109.46801 * 66.04844 * 13 3 2 15 15 C 1.33999 * 126.90447 * 260.07740 * 14 13 3 16 16 O 1.34439 * 110.15413 * 180.30625 * 15 14 13 17 17 C 1.34884 * 110.88529 * 359.75531 * 16 15 14 18 18 C 1.38910 * 133.37816 * 179.97438 * 17 16 15 19 19 C 1.37808 * 119.99657 * 180.02562 * 18 17 16 20 20 C 1.38962 * 120.66119 * 0.04868 * 19 18 17 21 21 F 1.35102 * 119.88487 * 180.02562 * 20 19 18 22 22 C 1.37903 * 120.22355 * 359.97272 * 20 19 18 23 23 C 1.39440 * 119.58327 * 0.02562 * 22 20 19 24 24 H 1.09005 * 109.46804 * 60.26652 * 1 2 3 25 25 H 1.08997 * 109.47516 * 180.27033 * 1 2 3 26 26 H 1.09002 * 109.46667 * 300.26834 * 1 2 3 27 27 H 1.09002 * 109.47142 * 239.99700 * 2 1 3 28 28 H 1.09000 * 109.46881 * 120.00119 * 2 1 3 29 29 H 1.08995 * 109.47326 * 48.72776 * 4 3 2 30 30 H 1.09001 * 109.47185 * 168.72777 * 4 3 2 31 31 H 0.97002 * 119.99990 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.46824 * 306.05162 * 13 3 2 33 33 H 1.08997 * 109.47166 * 186.04733 * 13 3 2 34 34 H 1.08006 * 124.92521 * 0.06658 * 15 14 13 35 35 H 1.08007 * 120.00827 * 0.03572 * 18 17 16 36 36 H 1.07997 * 119.67506 * 180.02562 * 19 18 17 37 37 H 1.08005 * 120.21446 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5889 2.0956 -1.2113 5 6 2.3478 1.5665 -2.4009 6 1 3.0613 0.7657 -2.2736 7 6 2.1313 2.1046 -3.6517 8 7 2.7940 1.6432 -4.6898 9 14 0.8977 3.4900 -3.8718 10 1 1.5842 4.7957 -3.7017 11 1 0.3066 3.4150 -5.2320 12 1 -0.1783 3.3605 -2.8566 13 6 1.5865 2.0965 1.2100 14 6 2.2473 1.4827 2.4173 15 6 1.7036 0.6077 3.2742 16 8 2.5900 0.2863 4.2326 17 6 3.7583 0.9333 4.0436 18 6 4.9633 0.9481 4.7346 19 6 6.0048 1.7315 4.2865 20 6 5.8642 2.5126 3.1458 21 9 6.8957 3.2743 2.7203 22 6 4.6759 2.5120 2.4462 23 6 3.6156 1.7230 2.8908 24 1 -0.3633 0.5097 -0.8924 25 1 -0.3634 -1.0276 0.0048 26 1 -0.3633 0.5180 0.8876 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5208 1.9402 -1.3633 30 1 1.7884 3.1612 -1.0978 31 1 2.6414 2.0215 -5.5699 32 1 0.5039 2.0186 1.3093 33 1 1.8699 3.1464 1.1351 34 1 0.6978 0.2200 3.2071 35 1 5.0841 0.3457 5.6228 36 1 6.9395 1.7388 4.8275 37 1 4.5669 3.1188 1.5594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141852775.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:44 Heat of formation + Delta-G solvation = -25.743925 kcal Electronic energy + Delta-G solvation = -21208.668229 eV Core-core repulsion = 17866.473242 eV Total energy + Delta-G solvation = -3342.194987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.90285 -43.45549 -39.08985 -38.55533 -34.93586 -34.03493 -31.35146 -31.30445 -30.54753 -29.32418 -26.37025 -24.64966 -24.47942 -23.38628 -21.80147 -20.48201 -18.96412 -18.90551 -18.22296 -17.47335 -17.29755 -16.72488 -16.57945 -16.39990 -16.12142 -16.00058 -15.20960 -14.75236 -14.53180 -14.34302 -14.30711 -14.06165 -13.62921 -13.32963 -13.23642 -12.88870 -12.79255 -12.76319 -12.38360 -12.17898 -11.92107 -11.84755 -11.50774 -11.47373 -11.01548 -10.76186 -9.49113 -9.24002 -8.86340 -8.27005 -6.29479 -0.18015 0.12801 1.30175 1.34616 1.35686 1.46054 1.80264 2.34498 2.50234 3.06557 3.13166 3.37200 3.53554 3.56605 3.92141 4.05215 4.21402 4.26090 4.30620 4.41446 4.50750 4.54405 4.62431 4.66548 4.77968 4.92114 4.96267 5.06382 5.08551 5.13418 5.17923 5.27091 5.37137 5.46206 5.57740 5.60362 6.01194 6.11023 6.43901 6.68519 6.76765 7.33581 8.90181 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.005199 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.977140 B = 5384.572235 C = 6400.544340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.062 3.938 3 N -0.542 5.542 4 C 0.170 3.830 5 C -0.510 4.510 6 H 0.030 0.970 7 C 0.006 3.994 8 N -0.952 5.952 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.245 1.245 13 C 0.119 3.881 14 C -0.180 4.180 15 C 0.032 3.968 16 O -0.190 6.190 17 C 0.025 3.975 18 C -0.068 4.068 19 C -0.123 4.123 20 C 0.068 3.932 21 F -0.147 7.147 22 C -0.121 4.121 23 C -0.106 4.106 24 H 0.040 0.960 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.006 0.994 30 H 0.021 0.979 31 H 0.265 0.735 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.245 0.755 35 H 0.178 0.822 36 H 0.179 0.821 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.245 -0.821 22.259 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.066 4.066 3 N -0.266 5.266 4 C 0.043 3.957 5 C -0.548 4.548 6 H 0.049 0.951 7 C -0.191 4.191 8 N -0.593 5.593 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.168 1.168 13 C -0.008 4.008 14 C -0.181 4.181 15 C -0.033 4.033 16 O -0.091 6.091 17 C -0.023 4.023 18 C -0.086 4.086 19 C -0.141 4.141 20 C 0.048 3.952 21 F -0.125 7.125 22 C -0.140 4.140 23 C -0.107 4.107 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.024 0.976 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.261 0.739 35 H 0.195 0.805 36 H 0.196 0.804 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.703 -0.951 22.276 22.362 hybrid contribution -0.732 0.891 -1.474 1.871 sum -2.434 -0.061 20.802 20.944 Atomic orbital electron populations 1.22322 0.96999 1.02915 1.01794 1.21921 0.93853 0.89893 1.00970 1.61991 1.60517 1.02754 1.01294 1.19977 0.94127 0.93675 0.87948 1.21247 1.22613 1.18994 0.91953 0.95128 1.25852 0.98144 0.99713 0.95379 1.70068 1.44193 1.44758 1.00260 0.85728 0.79889 0.79333 0.78073 1.19413 1.20870 1.16848 1.20408 0.97257 0.96991 0.86154 1.21049 0.93186 1.04039 0.99870 1.24395 0.95700 0.96414 0.86833 1.84029 1.19932 1.58376 1.46768 1.19943 0.88641 0.96490 0.97194 1.20095 0.87068 1.00405 1.00984 1.21175 1.01246 0.96351 0.95319 1.17655 0.84629 0.95943 0.96943 1.91478 1.57039 1.74093 1.89935 1.20518 0.91894 1.01030 1.00560 1.19704 0.94897 0.99503 0.96637 0.94101 0.90723 0.90705 0.93825 0.90651 0.97610 0.96048 0.92567 0.91615 0.91229 0.73934 0.80486 0.80359 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.28 9.28 71.98 0.67 -4.61 16 2 C 0.06 2.23 5.74 86.30 0.50 2.72 16 3 N -0.54 -21.86 4.65 -905.39 -4.21 -26.08 16 4 C 0.17 7.97 3.65 85.56 0.31 8.28 16 5 C -0.51 -29.75 9.13 25.60 0.23 -29.51 16 6 H 0.03 2.03 7.67 -2.91 -0.02 2.00 16 7 C 0.01 0.34 5.47 84.65 0.46 0.80 16 8 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 9 Si 0.95 44.06 27.44 68.60 1.88 45.94 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.25 -10.39 6.58 99.48 0.65 -9.74 16 13 C 0.12 3.73 5.30 85.56 0.45 4.19 16 14 C -0.18 -5.04 4.95 -18.60 -0.09 -5.13 16 15 C 0.03 0.68 11.17 66.85 0.75 1.43 16 16 O -0.19 -4.39 10.58 -9.60 -0.10 -4.49 16 17 C 0.02 0.61 7.41 22.97 0.17 0.78 16 18 C -0.07 -1.28 10.06 22.33 0.22 -1.05 16 19 C -0.12 -2.43 9.99 22.34 0.22 -2.21 16 20 C 0.07 1.85 7.29 22.36 0.16 2.01 16 21 F -0.15 -4.27 17.26 44.97 0.78 -3.50 16 22 C -0.12 -3.83 10.07 22.48 0.23 -3.60 16 23 C -0.11 -3.19 6.38 -20.21 -0.13 -3.32 16 24 H 0.04 1.40 6.24 -2.38 -0.01 1.38 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 1.71 6.30 -2.39 -0.02 1.70 16 27 H 0.04 1.91 7.16 -2.39 -0.02 1.89 16 28 H 0.08 2.39 6.67 -2.39 -0.02 2.38 16 29 H 0.01 0.29 5.02 -2.39 -0.01 0.28 16 30 H 0.02 1.00 7.18 -2.39 -0.02 0.99 16 31 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.07 1.73 6.05 -2.39 -0.01 1.72 16 33 H 0.07 2.27 7.87 -2.39 -0.02 2.25 16 34 H 0.24 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -72.01 309.42 3.84 -68.17 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.04 Total: 9.32 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 4.16 Total: -29.22 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -3.91 Total: -86.22 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.10 Total: -4.49 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Total: -72.01 3.84 -68.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141852775.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.430 kcal (2) G-P(sol) polarization free energy of solvation -72.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds