Wall clock time and date at job start Mon Mar 30 2020 01:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99445 * 2 1 4 4 C 1.53000 * 109.46937 * 125.00270 * 3 2 1 5 5 H 1.08997 * 109.47282 * 54.99687 * 4 3 2 6 6 C 1.52998 * 109.47059 * 294.99641 * 4 3 2 7 7 C 1.50700 * 109.46823 * 174.99652 * 4 3 2 8 8 O 1.21292 * 120.00361 * 359.97438 * 7 4 3 9 9 N 1.34785 * 119.99858 * 179.97438 * 7 4 3 10 10 C 1.40003 * 119.99613 * 184.04957 * 9 7 4 11 11 C 1.39366 * 119.91809 * 324.57673 * 10 9 7 12 12 C 1.38363 * 120.47338 * 179.76331 * 11 10 9 13 13 C 1.38009 * 120.28579 * 0.51334 * 12 11 10 14 14 F 1.35096 * 120.09604 * 179.72008 * 13 12 11 15 15 C 1.41012 * 119.81456 * 359.74498 * 13 12 11 16 16 C 1.41286 * 120.23008 * 179.97438 * 15 13 12 17 17 H 1.07995 * 120.00539 * 34.77332 * 16 15 13 18 18 C 1.39929 * 119.99836 * 214.77338 * 16 15 13 19 19 N 1.30848 * 119.99878 * 355.57129 * 18 16 15 20 20 Si 1.86800 * 119.99799 * 175.56864 * 18 16 15 21 21 H 1.48504 * 109.47035 * 60.00599 * 20 18 16 22 22 H 1.48502 * 109.46646 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47391 * 299.99810 * 20 18 16 24 24 C 1.38145 * 119.90659 * 144.85122 * 10 9 7 25 25 H 1.08000 * 120.00368 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99576 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00769 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47406 * 5.00025 * 3 2 1 29 29 H 1.09001 * 109.46978 * 244.99694 * 3 2 1 30 30 H 1.09000 * 109.47092 * 60.00282 * 6 4 3 31 31 H 1.09001 * 109.47372 * 180.02562 * 6 4 3 32 32 H 1.09005 * 109.47223 * 300.00372 * 6 4 3 33 33 H 0.96993 * 119.99754 * 4.32827 * 9 7 4 34 34 H 1.08001 * 119.76187 * 0.02562 * 11 10 9 35 35 H 1.07997 * 119.85861 * 180.23746 * 12 11 10 36 36 H 0.97008 * 120.00191 * 179.97438 * 19 18 16 37 37 H 1.08008 * 120.14298 * 359.96131 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6826 0.4575 1.1403 6 6 2.2450 1.3220 2.4918 7 6 3.8746 2.5827 1.1120 8 8 3.7122 3.3729 0.2061 9 7 4.8060 2.8223 2.0563 10 6 5.5270 4.0223 2.0398 11 6 5.8794 4.6048 0.8238 12 6 6.5876 5.7931 0.7941 13 6 6.9623 6.4096 1.9706 14 9 7.6587 7.5667 1.9371 15 6 6.6168 5.8279 3.2078 16 6 6.9965 6.4513 4.4176 17 1 7.0227 7.5288 4.4849 18 6 7.3385 5.6724 5.5286 19 7 7.2237 4.3701 5.4750 20 14 7.9589 6.4920 7.0884 21 1 6.9215 7.4198 7.6064 22 1 8.2506 5.4546 8.1102 23 1 9.1984 7.2528 6.7885 24 6 5.8922 4.6228 3.2291 25 1 -0.5401 0.9353 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3584 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 1.6377 0.4182 2.5421 31 1 2.9371 1.3424 3.3336 32 1 1.5972 2.1977 2.5331 33 1 4.9795 2.1616 2.7449 34 1 5.5939 4.1275 -0.1020 35 1 6.8521 6.2378 -0.1539 36 1 7.4612 3.8301 6.2451 37 1 5.6221 4.1689 4.1713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144020209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:36 Heat of formation + Delta-G solvation = -58.667096 kcal Electronic energy + Delta-G solvation = -20802.037440 eV Core-core repulsion = 17458.414797 eV Total energy + Delta-G solvation = -3343.622643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.24322 -39.95995 -37.40270 -35.86397 -34.26932 -33.37053 -32.08839 -29.75209 -28.08833 -26.81613 -25.35337 -23.62862 -21.60949 -20.77878 -19.83977 -19.48908 -17.57492 -16.92259 -16.08901 -15.81431 -15.38465 -15.12580 -14.87765 -14.38958 -14.24754 -14.00699 -13.59798 -13.03805 -12.92742 -12.64788 -12.46221 -12.08376 -11.96627 -11.64562 -11.55845 -11.49229 -11.16883 -11.11962 -10.99203 -10.97486 -10.71354 -10.26711 -9.74864 -9.49760 -9.38820 -9.21887 -8.93443 -7.49864 -6.98722 -6.67689 -4.50909 2.14270 2.41033 2.73187 3.04201 3.05858 3.08859 3.22334 3.64644 3.91509 4.55969 4.72792 4.76067 4.97011 5.09970 5.17197 5.34963 5.43586 5.66258 5.70830 5.77136 5.86548 5.92585 6.09624 6.13446 6.15346 6.49543 6.53865 6.65533 6.71220 6.83052 6.86981 7.16676 7.45955 7.55271 7.64349 7.94279 7.95412 8.18321 8.44478 8.66668 8.74381 8.80433 10.17213 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.004323 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.789863 B = 6475.210883 C = 7502.813810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.076 4.076 4 C -0.105 4.105 5 H 0.096 0.904 6 C -0.144 4.144 7 C 0.509 3.491 8 O -0.528 6.528 9 N -0.662 5.662 10 C 0.131 3.869 11 C -0.194 4.194 12 C -0.123 4.123 13 C -0.020 4.020 14 F -0.162 7.162 15 C 0.091 3.909 16 C -0.457 4.457 17 H 0.080 0.920 18 C 0.073 3.927 19 N -0.813 5.813 20 Si 0.919 3.081 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.151 4.151 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.404 0.596 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.280 0.720 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 -9.880 -2.980 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.165 4.165 3 C -0.114 4.114 4 C -0.126 4.126 5 H 0.114 0.886 6 C -0.201 4.201 7 C 0.296 3.704 8 O -0.404 6.404 9 N -0.306 5.306 10 C 0.039 3.961 11 C -0.215 4.215 12 C -0.143 4.143 13 C -0.040 4.040 14 F -0.141 7.141 15 C 0.087 3.913 16 C -0.488 4.488 17 H 0.098 0.902 18 C -0.142 4.142 19 N -0.440 5.440 20 Si 0.744 3.256 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.173 4.173 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.994 -9.497 -3.468 12.889 hybrid contribution 0.600 0.063 1.063 1.223 sum -7.393 -9.434 -2.405 12.225 Atomic orbital electron populations 1.23838 0.95962 1.01718 1.01962 1.22968 0.96050 0.98347 0.99137 1.20587 0.97713 0.95312 0.97791 1.21256 0.97147 0.96658 0.97566 0.88587 1.21796 1.00343 1.02805 0.95174 1.20645 0.80049 0.87764 0.81967 1.90684 1.68199 1.47856 1.33677 1.43460 1.37309 1.19240 1.30551 1.17708 0.96543 0.87252 0.94622 1.20344 1.06267 0.98514 0.96357 1.20426 1.01308 0.96791 0.95766 1.18103 1.04112 0.87233 0.94581 1.91277 1.77848 1.47561 1.97396 1.17394 0.90576 0.92249 0.91039 1.19378 1.40043 0.94837 0.94512 0.90183 1.25832 0.93671 0.94750 0.99957 1.69709 1.37795 1.05367 1.31136 0.86175 0.80166 0.79503 0.79751 1.18920 1.20324 1.18941 1.21225 1.02184 0.98021 0.95839 0.88572 0.88707 0.87449 0.90720 0.90045 0.91476 0.91885 0.92026 0.76127 0.86561 0.87689 0.90949 0.84192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 14.32 29.01 0.42 -1.30 16 2 C -0.15 -1.36 8.50 -36.02 -0.31 -1.67 16 3 C -0.08 -0.88 4.48 -27.88 -0.12 -1.01 16 4 C -0.10 -1.24 2.71 -91.77 -0.25 -1.49 16 5 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 6 C -0.14 -1.51 8.91 37.16 0.33 -1.18 16 7 C 0.51 8.56 6.99 -10.98 -0.08 8.48 16 8 O -0.53 -10.81 13.38 5.55 0.07 -10.74 16 9 N -0.66 -11.80 5.19 -9.89 -0.05 -11.85 16 10 C 0.13 2.94 6.28 -83.74 -0.53 2.42 16 11 C -0.19 -4.48 8.69 -39.12 -0.34 -4.82 16 12 C -0.12 -2.91 10.00 -39.62 -0.40 -3.31 16 13 C -0.02 -0.51 7.31 -38.61 -0.28 -0.79 16 14 F -0.16 -4.14 16.82 2.25 0.04 -4.11 16 15 C 0.09 2.43 5.56 -106.78 -0.59 1.83 16 16 C -0.46 -12.20 8.70 -37.79 -0.33 -12.52 16 17 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 18 C 0.07 1.80 5.42 -17.34 -0.09 1.71 16 19 N -0.81 -19.97 10.60 55.55 0.59 -19.38 16 20 Si 0.92 18.70 29.56 -169.99 -5.03 13.67 16 21 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.15 -3.72 8.57 -38.71 -0.33 -4.06 16 25 H 0.10 0.84 7.84 -52.49 -0.41 0.43 16 26 H 0.09 0.68 8.06 -52.49 -0.42 0.26 16 27 H 0.11 0.86 8.06 -52.49 -0.42 0.43 16 28 H 0.07 0.94 7.79 -51.93 -0.40 0.53 16 29 H 0.08 1.02 7.95 -51.93 -0.41 0.60 16 30 H 0.07 0.59 7.38 -51.93 -0.38 0.21 16 31 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 6.04 8.37 -40.82 -0.34 5.70 16 34 H 0.12 2.63 6.25 -52.49 -0.33 2.30 16 35 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 37 H 0.14 3.47 6.14 -52.48 -0.32 3.15 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -29.05 319.29 -7.13 -36.18 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -4.66 Total: 9.12 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.90 Total: -17.71 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.54 Total: -31.23 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.05 -7.13 -36.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144020209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.489 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds