Wall clock time and date at job start Mon Mar 30 2020 01:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99445 * 2 1 4 4 C 1.53000 * 109.46937 * 125.00270 * 3 2 1 5 5 H 1.08997 * 109.47282 * 54.99687 * 4 3 2 6 6 C 1.52998 * 109.47059 * 294.99641 * 4 3 2 7 7 C 1.50700 * 109.46823 * 174.99652 * 4 3 2 8 8 O 1.21292 * 120.00361 * 359.97438 * 7 4 3 9 9 N 1.34785 * 119.99858 * 179.97438 * 7 4 3 10 10 C 1.40003 * 119.99613 * 184.04957 * 9 7 4 11 11 C 1.39366 * 119.91809 * 324.57673 * 10 9 7 12 12 C 1.38363 * 120.47338 * 179.76331 * 11 10 9 13 13 C 1.38009 * 120.28579 * 0.51334 * 12 11 10 14 14 F 1.35096 * 120.09604 * 179.72008 * 13 12 11 15 15 C 1.41012 * 119.81456 * 359.74498 * 13 12 11 16 16 C 1.41286 * 120.23008 * 179.97438 * 15 13 12 17 17 H 1.07995 * 120.00539 * 34.77332 * 16 15 13 18 18 C 1.39929 * 119.99836 * 214.77338 * 16 15 13 19 19 N 1.30848 * 119.99878 * 355.57129 * 18 16 15 20 20 Si 1.86800 * 119.99799 * 175.56864 * 18 16 15 21 21 H 1.48504 * 109.47035 * 60.00599 * 20 18 16 22 22 H 1.48502 * 109.46646 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47391 * 299.99810 * 20 18 16 24 24 C 1.38145 * 119.90659 * 144.85122 * 10 9 7 25 25 H 1.08000 * 120.00368 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99576 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.00769 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47406 * 5.00025 * 3 2 1 29 29 H 1.09001 * 109.46978 * 244.99694 * 3 2 1 30 30 H 1.09000 * 109.47092 * 60.00282 * 6 4 3 31 31 H 1.09001 * 109.47372 * 180.02562 * 6 4 3 32 32 H 1.09005 * 109.47223 * 300.00372 * 6 4 3 33 33 H 0.96993 * 119.99754 * 4.32827 * 9 7 4 34 34 H 1.08001 * 119.76187 * 0.02562 * 11 10 9 35 35 H 1.07997 * 119.85861 * 180.23746 * 12 11 10 36 36 H 0.97008 * 120.00191 * 179.97438 * 19 18 16 37 37 H 1.08008 * 120.14298 * 359.96131 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.6826 0.4575 1.1403 6 6 2.2450 1.3220 2.4918 7 6 3.8746 2.5827 1.1120 8 8 3.7122 3.3729 0.2061 9 7 4.8060 2.8223 2.0563 10 6 5.5270 4.0223 2.0398 11 6 5.8794 4.6048 0.8238 12 6 6.5876 5.7931 0.7941 13 6 6.9623 6.4096 1.9706 14 9 7.6587 7.5667 1.9371 15 6 6.6168 5.8279 3.2078 16 6 6.9965 6.4513 4.4176 17 1 7.0227 7.5288 4.4849 18 6 7.3385 5.6724 5.5286 19 7 7.2237 4.3701 5.4750 20 14 7.9589 6.4920 7.0884 21 1 6.9215 7.4198 7.6064 22 1 8.2506 5.4546 8.1102 23 1 9.1984 7.2528 6.7885 24 6 5.8922 4.6228 3.2291 25 1 -0.5401 0.9353 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3584 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 1.6377 0.4182 2.5421 31 1 2.9371 1.3424 3.3336 32 1 1.5972 2.1977 2.5331 33 1 4.9795 2.1616 2.7449 34 1 5.5939 4.1275 -0.1020 35 1 6.8521 6.2378 -0.1539 36 1 7.4612 3.8301 6.2451 37 1 5.6221 4.1689 4.1713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144020209.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:35 Heat of formation + Delta-G solvation = -74.155222 kcal Electronic energy + Delta-G solvation = -20802.709055 eV Core-core repulsion = 17458.414797 eV Total energy + Delta-G solvation = -3344.294258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.23125 -41.41459 -39.09862 -36.91735 -35.97383 -35.09771 -33.02799 -31.66406 -29.81081 -27.67508 -27.27193 -24.87850 -23.46595 -22.37918 -20.99639 -20.56693 -19.37963 -18.35845 -17.97336 -17.48256 -16.90907 -16.52491 -16.04502 -16.00643 -15.76590 -15.52032 -14.92329 -14.70846 -14.44676 -13.93165 -13.81834 -13.67467 -13.39209 -13.21474 -13.00727 -12.87139 -12.74448 -12.48875 -12.35067 -12.05647 -11.91186 -11.84439 -11.58519 -11.17252 -10.90752 -10.55462 -10.14835 -9.42857 -8.82792 -8.52016 -6.49403 0.60160 0.86113 1.39364 1.44403 1.47063 1.50637 1.71513 2.21827 2.26447 2.69800 3.41553 3.64863 3.85943 3.99319 4.04204 4.24429 4.32390 4.42456 4.48728 4.66323 4.80305 4.88906 4.94025 4.94311 5.00791 5.05512 5.10894 5.25222 5.26900 5.30890 5.60535 5.74312 5.76415 5.79801 5.96507 6.00421 6.12990 6.46919 6.66883 6.78807 6.83488 7.27794 8.33079 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.004323 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.789863 B = 6475.210883 C = 7502.813810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 C -0.074 4.074 4 C -0.092 4.092 5 H 0.127 0.873 6 C -0.141 4.141 7 C 0.507 3.493 8 O -0.566 6.566 9 N -0.657 5.657 10 C 0.142 3.858 11 C -0.201 4.201 12 C -0.119 4.119 13 C -0.055 4.055 14 F -0.168 7.168 15 C 0.065 3.935 16 C -0.496 4.496 17 H 0.068 0.932 18 C 0.038 3.962 19 N -0.826 5.826 20 Si 0.987 3.013 21 H -0.260 1.260 22 H -0.259 1.259 23 H -0.269 1.269 24 C -0.164 4.164 25 H 0.090 0.910 26 H 0.114 0.886 27 H 0.128 0.872 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.419 0.581 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.291 0.709 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.576 -12.087 -2.164 14.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.170 4.170 3 C -0.112 4.112 4 C -0.113 4.113 5 H 0.145 0.855 6 C -0.198 4.198 7 C 0.296 3.704 8 O -0.445 6.445 9 N -0.302 5.302 10 C 0.048 3.952 11 C -0.222 4.222 12 C -0.138 4.138 13 C -0.075 4.075 14 F -0.147 7.147 15 C 0.062 3.938 16 C -0.526 4.526 17 H 0.086 0.914 18 C -0.176 4.176 19 N -0.453 5.453 20 Si 0.808 3.192 21 H -0.185 1.185 22 H -0.183 1.183 23 H -0.193 1.193 24 C -0.186 4.186 25 H 0.108 0.892 26 H 0.132 0.868 27 H 0.145 0.855 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.257 0.743 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.102 0.898 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.685 -11.750 -2.655 14.850 hybrid contribution 0.732 0.692 0.731 1.244 sum -7.953 -11.058 -1.925 13.756 Atomic orbital electron populations 1.24011 0.95910 1.02415 1.00617 1.22915 0.96159 0.97675 1.00254 1.20532 0.97338 0.96335 0.96995 1.21296 0.96880 0.94600 0.98538 0.85526 1.21805 1.00308 1.03360 0.94325 1.21634 0.79433 0.88799 0.80534 1.90665 1.69077 1.49586 1.35135 1.43472 1.37129 1.18049 1.31505 1.17755 0.95410 0.88335 0.93683 1.20531 1.06211 0.98552 0.96884 1.20684 1.00400 0.96682 0.96061 1.18349 1.05904 0.87916 0.95332 1.91240 1.78137 1.47876 1.97449 1.17769 0.91138 0.93342 0.91562 1.19555 1.42405 0.94673 0.95968 0.91374 1.26619 0.93198 0.95346 1.02422 1.69722 1.37027 1.06175 1.32383 0.85163 0.79221 0.78845 0.75948 1.18478 1.18310 1.19344 1.21169 1.02981 0.98012 0.96418 0.89191 0.86767 0.85453 0.92460 0.91413 0.88983 0.91346 0.93540 0.74333 0.85884 0.85466 0.89819 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 14.32 67.78 0.97 -1.85 16 2 C -0.15 -2.39 8.50 25.65 0.22 -2.17 16 3 C -0.07 -1.60 4.48 29.85 0.13 -1.47 16 4 C -0.09 -1.98 2.71 -11.54 -0.03 -2.01 16 5 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 6 C -0.14 -2.61 8.91 71.98 0.64 -1.96 16 7 C 0.51 16.52 6.99 87.66 0.61 17.13 16 8 O -0.57 -23.12 13.38 -3.07 -0.04 -23.16 16 9 N -0.66 -22.77 5.19 -303.60 -1.58 -24.35 16 10 C 0.14 6.40 6.28 38.09 0.24 6.63 16 11 C -0.20 -9.32 8.69 22.57 0.20 -9.12 16 12 C -0.12 -5.67 10.00 22.24 0.22 -5.45 16 13 C -0.05 -2.91 7.31 22.90 0.17 -2.74 16 14 F -0.17 -8.89 16.82 44.97 0.76 -8.14 16 15 C 0.07 3.60 5.56 -21.26 -0.12 3.48 16 16 C -0.50 -27.24 8.70 23.43 0.20 -27.04 16 17 H 0.07 3.76 7.84 -2.91 -0.02 3.73 16 18 C 0.04 1.88 5.42 85.25 0.46 2.34 16 19 N -0.83 -40.34 10.60 21.82 0.23 -40.11 16 20 Si 0.99 37.93 29.56 68.60 2.03 39.95 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 23 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 24 C -0.16 -8.23 8.57 22.83 0.20 -8.03 16 25 H 0.09 1.42 7.84 -2.91 -0.02 1.40 16 26 H 0.11 1.25 8.06 -2.91 -0.02 1.23 16 27 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 28 H 0.06 1.41 7.79 -2.39 -0.02 1.40 16 29 H 0.07 1.64 7.95 -2.39 -0.02 1.62 16 30 H 0.09 1.29 7.38 -2.39 -0.02 1.27 16 31 H 0.07 1.21 7.67 -2.39 -0.02 1.19 16 32 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.42 11.86 8.37 -92.71 -0.78 11.09 16 34 H 0.12 5.54 6.25 -2.91 -0.02 5.52 16 35 H 0.13 5.35 8.06 -2.91 -0.02 5.32 16 36 H 0.29 12.70 8.30 -92.70 -0.77 11.93 16 37 H 0.14 6.84 6.14 -2.91 -0.02 6.82 16 Total: -1.00 -64.04 319.29 5.82 -58.22 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.31 Total: 29.85 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 4.11 Total: -32.26 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -1.34 Total: -64.46 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.04 Total: -23.16 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 0.76 Total: -8.14 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.95 kcal Total: -64.04 5.82 -58.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144020209.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.937 kcal (2) G-P(sol) polarization free energy of solvation -64.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds