Wall clock time and date at job start Mon Mar 30 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46901 * 109.47069 * 2 1 4 4 C 1.46892 * 111.00338 * 296.68341 * 3 2 1 5 5 C 1.50700 * 109.47040 * 295.28795 * 4 3 2 6 6 H 1.08000 * 119.99993 * 357.38701 * 5 4 3 7 7 C 1.37876 * 120.00039 * 177.39019 * 5 4 3 8 8 N 1.31513 * 120.00075 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99960 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47398 * 59.99968 * 9 7 5 11 11 H 1.48500 * 109.46904 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46939 * 299.99543 * 9 7 5 13 13 C 1.46901 * 111.00129 * 172.72353 * 3 2 1 14 14 H 1.09000 * 109.55002 * 62.68202 * 13 3 2 15 15 C 1.53532 * 109.64334 * 182.93677 * 13 3 2 16 16 S 1.81615 * 107.28886 * 192.58511 * 15 13 3 17 17 C 1.76462 * 102.60732 * 313.58259 * 16 15 13 18 18 C 1.39637 * 117.71477 * 192.72786 * 17 16 15 19 19 C 1.37738 * 120.62812 * 180.73447 * 18 17 16 20 20 C 1.38340 * 119.50767 * 359.97438 * 19 18 17 21 21 C 1.37762 * 120.01379 * 359.55540 * 20 19 18 22 22 C 1.38176 * 122.30718 * 12.96790 * 17 16 15 23 23 C 1.50044 * 124.78459 * 358.94733 * 22 17 16 24 24 H 1.09002 * 109.47563 * 306.87935 * 1 2 3 25 25 H 1.09000 * 109.47627 * 66.88308 * 1 2 3 26 26 H 1.09010 * 109.47290 * 186.88307 * 1 2 3 27 27 H 1.09002 * 109.47322 * 240.00220 * 2 1 3 28 28 H 1.09002 * 109.47528 * 120.00066 * 2 1 3 29 29 H 1.08998 * 109.46908 * 55.28215 * 4 3 2 30 30 H 1.09002 * 109.47462 * 175.28608 * 4 3 2 31 31 H 0.97003 * 119.99956 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.89244 * 312.03095 * 15 13 3 33 33 H 1.09000 * 109.89479 * 73.06172 * 15 13 3 34 34 H 1.08000 * 119.68656 * 0.76451 * 18 17 16 35 35 H 1.07999 * 120.24664 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.99235 * 179.75079 * 20 19 18 37 37 H 1.07992 * 119.47012 * 180.24957 * 21 20 19 38 38 H 1.08997 * 108.65948 * 143.58150 * 23 22 17 39 39 H 1.09002 * 108.65643 * 261.59425 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6145 2.0867 -1.2253 5 6 2.2772 1.4423 -2.4155 6 1 2.9664 0.6233 -2.2721 7 6 2.0037 1.8985 -3.6876 8 7 1.1641 2.8955 -3.8623 9 14 2.8246 1.0993 -5.1630 10 1 2.4617 -0.3398 -5.2123 11 1 2.3657 1.7679 -6.4071 12 1 4.2985 1.2344 -5.0427 13 6 3.4776 1.4279 0.1737 14 1 3.9600 0.9293 -0.6670 15 6 3.9464 2.8883 0.2427 16 16 5.7550 2.8830 0.0771 17 6 6.2400 1.6033 1.1911 18 6 7.5938 1.5068 1.5195 19 6 8.0406 0.5211 2.3715 20 6 7.1364 -0.3796 2.9053 21 6 5.7987 -0.2813 2.5910 22 6 5.3334 0.7110 1.7306 23 6 3.8565 0.7263 1.4662 24 1 -0.3634 0.6167 0.8220 25 1 -0.3634 0.4035 -0.9451 26 1 -0.3634 -1.0203 0.1232 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5318 2.0280 -1.3364 30 1 1.9172 3.1319 -1.1625 31 1 0.9719 3.2167 -4.7572 32 1 3.5011 3.4596 -0.5718 33 1 3.6618 3.3244 1.2002 34 1 8.2971 2.2120 1.1018 35 1 9.0891 0.4518 2.6210 36 1 7.4788 -1.1581 3.5710 37 1 5.0999 -0.9865 3.0159 38 1 3.4995 -0.3026 1.4221 39 1 3.3593 1.2319 2.2940 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172202310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:54 Heat of formation + Delta-G solvation = 26.005042 kcal Electronic energy + Delta-G solvation = -19632.322071 eV Core-core repulsion = 16858.584264 eV Total energy + Delta-G solvation = -2773.737807 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.37719 -37.75375 -33.82112 -32.45222 -31.03068 -30.70287 -28.62968 -27.15255 -25.81366 -23.29559 -22.55856 -21.94717 -20.76139 -19.12627 -17.49719 -16.24506 -15.78779 -15.71160 -15.23336 -14.70178 -14.40795 -14.13367 -13.82122 -13.48305 -13.19978 -12.76844 -12.55779 -12.47712 -12.22540 -11.63860 -11.49691 -11.44852 -11.15217 -11.01905 -10.83826 -10.78238 -10.52479 -10.29526 -10.15003 -9.94305 -9.69001 -9.49034 -9.40343 -8.63088 -8.44014 -7.29214 -7.07623 -6.06452 -4.15111 1.33335 1.41493 1.96178 2.74834 3.28153 3.32845 3.36473 3.76153 4.39158 4.68657 4.90913 4.98449 5.08466 5.22873 5.26900 5.30460 5.43612 5.59020 5.78086 5.82885 5.84281 5.90357 6.00969 6.04488 6.09581 6.21221 6.33839 6.42081 6.51032 6.52572 6.59624 6.64193 6.80907 6.88090 6.99241 7.16525 7.48726 7.85662 7.95983 8.16810 8.22899 8.93345 9.52138 10.98587 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.005997 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.851781 B = 4667.911909 C = 5348.880455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 N -0.534 5.534 4 C 0.182 3.818 5 C -0.548 4.548 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.890 5.890 9 Si 0.884 3.116 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.093 3.907 14 H 0.065 0.935 15 C -0.085 4.085 16 S -0.129 6.129 17 C -0.070 4.070 18 C -0.104 4.104 19 C -0.114 4.114 20 C -0.128 4.128 21 C -0.110 4.110 22 C -0.073 4.073 23 C -0.088 4.088 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.075 -4.408 12.312 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 N -0.259 5.259 4 C 0.057 3.943 5 C -0.587 4.587 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.017 4.017 14 H 0.083 0.917 15 C -0.234 4.234 16 S 0.116 5.884 17 C -0.183 4.183 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.149 4.149 21 C -0.130 4.130 22 C -0.080 4.080 23 C -0.125 4.125 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.147 0.853 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.100 0.900 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.341 -3.218 11.782 14.790 hybrid contribution 0.081 -1.656 -0.905 1.889 sum 8.422 -4.874 10.878 14.595 Atomic orbital electron populations 1.21717 0.95707 0.99947 1.02566 1.21932 0.95521 0.90534 0.99428 1.62637 1.08253 1.14386 1.40590 1.19864 0.97062 0.93799 0.83619 1.21631 1.26855 1.18118 0.92137 0.92644 1.24901 0.94846 0.94820 0.98840 1.69921 1.34408 1.25978 1.22529 0.86767 0.80174 0.79604 0.82244 1.20324 1.21183 1.20045 1.21338 0.91444 0.92958 0.95942 0.91747 1.23940 0.91115 1.01415 1.06888 1.85481 1.08536 1.42025 1.52405 1.21541 0.96227 0.99489 1.01069 1.20881 0.93599 0.99407 0.98846 1.20948 0.99405 0.95307 0.97702 1.20968 0.93371 0.99614 1.00966 1.21206 0.95855 0.97919 0.97976 1.19743 0.95323 0.95075 0.97860 1.20470 0.90354 1.02424 0.99259 0.92906 0.91761 0.93755 0.94076 0.92875 0.94118 0.95140 0.92731 0.85343 0.89541 0.85840 0.85910 0.86214 0.86192 0.90023 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.58 37.15 0.36 -2.09 16 2 C 0.05 1.00 5.22 -3.83 -0.02 0.98 16 3 N -0.53 -10.70 4.60 -228.45 -1.05 -11.75 16 4 C 0.18 4.39 4.53 -4.98 -0.02 4.37 16 5 C -0.55 -14.46 7.56 -34.44 -0.26 -14.73 16 6 H 0.06 1.48 5.84 -52.49 -0.31 1.17 16 7 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 8 N -0.89 -25.44 13.29 55.43 0.74 -24.70 16 9 Si 0.88 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.09 1.75 1.50 -68.01 -0.10 1.65 16 14 H 0.06 1.41 6.31 -51.93 -0.33 1.08 16 15 C -0.09 -1.55 5.85 37.43 0.22 -1.34 16 16 S -0.13 -2.23 21.99 -107.50 -2.36 -4.59 16 17 C -0.07 -1.12 6.05 -39.08 -0.24 -1.36 16 18 C -0.10 -1.43 9.65 -39.24 -0.38 -1.81 16 19 C -0.11 -1.34 10.06 -39.73 -0.40 -1.74 16 20 C -0.13 -1.48 10.03 -39.72 -0.40 -1.88 16 21 C -0.11 -1.42 9.48 -39.35 -0.37 -1.79 16 22 C -0.07 -1.12 5.78 -104.55 -0.60 -1.72 16 23 C -0.09 -1.37 4.35 -28.77 -0.13 -1.50 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 1.27 6.74 -51.93 -0.35 0.92 16 26 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.04 0.85 6.73 -51.93 -0.35 0.50 16 28 H 0.05 0.85 5.84 -51.93 -0.30 0.55 16 29 H 0.04 1.06 6.32 -51.93 -0.33 0.73 16 30 H 0.03 0.78 6.10 -51.93 -0.32 0.47 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.13 2.64 5.89 -51.93 -0.31 2.33 16 33 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 34 H 0.12 1.54 8.05 -52.49 -0.42 1.12 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.31 8.02 -52.49 -0.42 0.89 16 38 H 0.08 1.21 5.94 -51.93 -0.31 0.90 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 314.52 15.07 4.74 4.74 Total: -1.00 -27.94 314.52 -10.81 -38.75 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.41 Total: 2.40 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -2.44 Total: -21.16 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.31 Total: -36.45 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -2.36 Total: -4.59 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.94 -10.81 -38.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172202310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.755 kcal (2) G-P(sol) polarization free energy of solvation -27.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds