Wall clock time and date at job start Mon Mar 30 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46901 * 109.47069 * 2 1 4 4 C 1.46892 * 111.00338 * 296.68341 * 3 2 1 5 5 C 1.50700 * 109.47040 * 295.28795 * 4 3 2 6 6 H 1.08000 * 119.99993 * 357.38701 * 5 4 3 7 7 C 1.37876 * 120.00039 * 177.39019 * 5 4 3 8 8 N 1.31513 * 120.00075 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99960 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47398 * 59.99968 * 9 7 5 11 11 H 1.48500 * 109.46904 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46939 * 299.99543 * 9 7 5 13 13 C 1.46901 * 111.00129 * 172.72353 * 3 2 1 14 14 H 1.09000 * 109.55002 * 62.68202 * 13 3 2 15 15 C 1.53532 * 109.64334 * 182.93677 * 13 3 2 16 16 S 1.81615 * 107.28886 * 192.58511 * 15 13 3 17 17 C 1.76462 * 102.60732 * 313.58259 * 16 15 13 18 18 C 1.39637 * 117.71477 * 192.72786 * 17 16 15 19 19 C 1.37738 * 120.62812 * 180.73447 * 18 17 16 20 20 C 1.38340 * 119.50767 * 359.97438 * 19 18 17 21 21 C 1.37762 * 120.01379 * 359.55540 * 20 19 18 22 22 C 1.38176 * 122.30718 * 12.96790 * 17 16 15 23 23 C 1.50044 * 124.78459 * 358.94733 * 22 17 16 24 24 H 1.09002 * 109.47563 * 306.87935 * 1 2 3 25 25 H 1.09000 * 109.47627 * 66.88308 * 1 2 3 26 26 H 1.09010 * 109.47290 * 186.88307 * 1 2 3 27 27 H 1.09002 * 109.47322 * 240.00220 * 2 1 3 28 28 H 1.09002 * 109.47528 * 120.00066 * 2 1 3 29 29 H 1.08998 * 109.46908 * 55.28215 * 4 3 2 30 30 H 1.09002 * 109.47462 * 175.28608 * 4 3 2 31 31 H 0.97003 * 119.99956 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.89244 * 312.03095 * 15 13 3 33 33 H 1.09000 * 109.89479 * 73.06172 * 15 13 3 34 34 H 1.08000 * 119.68656 * 0.76451 * 18 17 16 35 35 H 1.07999 * 120.24664 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.99235 * 179.75079 * 20 19 18 37 37 H 1.07992 * 119.47012 * 180.24957 * 21 20 19 38 38 H 1.08997 * 108.65948 * 143.58150 * 23 22 17 39 39 H 1.09002 * 108.65643 * 261.59425 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6145 2.0867 -1.2253 5 6 2.2772 1.4423 -2.4155 6 1 2.9664 0.6233 -2.2721 7 6 2.0037 1.8985 -3.6876 8 7 1.1641 2.8955 -3.8623 9 14 2.8246 1.0993 -5.1630 10 1 2.4617 -0.3398 -5.2123 11 1 2.3657 1.7679 -6.4071 12 1 4.2985 1.2344 -5.0427 13 6 3.4776 1.4279 0.1737 14 1 3.9600 0.9293 -0.6670 15 6 3.9464 2.8883 0.2427 16 16 5.7550 2.8830 0.0771 17 6 6.2400 1.6033 1.1911 18 6 7.5938 1.5068 1.5195 19 6 8.0406 0.5211 2.3715 20 6 7.1364 -0.3796 2.9053 21 6 5.7987 -0.2813 2.5910 22 6 5.3334 0.7110 1.7306 23 6 3.8565 0.7263 1.4662 24 1 -0.3634 0.6167 0.8220 25 1 -0.3634 0.4035 -0.9451 26 1 -0.3634 -1.0203 0.1232 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5318 2.0280 -1.3364 30 1 1.9172 3.1319 -1.1625 31 1 0.9719 3.2167 -4.7572 32 1 3.5011 3.4596 -0.5718 33 1 3.6618 3.3244 1.2002 34 1 8.2971 2.2120 1.1018 35 1 9.0891 0.4518 2.6210 36 1 7.4788 -1.1581 3.5710 37 1 5.0999 -0.9865 3.0159 38 1 3.4995 -0.3026 1.4221 39 1 3.3593 1.2319 2.2940 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172202310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:54 Heat of formation + Delta-G solvation = 11.053567 kcal Electronic energy + Delta-G solvation = -19632.970416 eV Core-core repulsion = 16858.584264 eV Total energy + Delta-G solvation = -2774.386152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55455 -39.20983 -35.33248 -34.35319 -32.27495 -31.80902 -30.24234 -28.64701 -27.47144 -25.02708 -23.63895 -23.26558 -22.11743 -20.77802 -18.73143 -18.20856 -17.16747 -16.99317 -16.62156 -16.36887 -15.73621 -15.56339 -15.14749 -14.98060 -14.46487 -14.23195 -13.97342 -13.83077 -13.69540 -13.14379 -13.10885 -12.85879 -12.78307 -12.57137 -12.27205 -12.17287 -12.13962 -12.00073 -11.86347 -11.75479 -11.25854 -10.92964 -10.61566 -10.56229 -9.65454 -9.06723 -8.38661 -8.15871 -6.32670 0.29177 0.41317 0.65333 1.33247 1.34973 1.41644 1.41961 2.35609 2.75958 3.09982 3.24630 3.63950 3.81897 3.93193 4.04075 4.21092 4.31449 4.35403 4.51063 4.51934 4.56686 4.59156 4.67913 4.79744 4.83397 4.90376 5.04314 5.09857 5.19552 5.22931 5.28816 5.37501 5.40993 5.45313 5.52101 5.58988 5.77544 6.02956 6.05840 6.22820 6.48427 6.86029 7.37577 8.86133 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.005997 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.851781 B = 4667.911909 C = 5348.880455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.052 3.948 3 N -0.528 5.528 4 C 0.197 3.803 5 C -0.548 4.548 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.922 5.922 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.099 3.901 14 H 0.029 0.971 15 C -0.079 4.079 16 S -0.158 6.158 17 C -0.093 4.093 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.093 4.093 23 C -0.077 4.077 24 H 0.061 0.939 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.015 0.985 28 H 0.088 0.912 29 H 0.019 0.981 30 H 0.010 0.990 31 H 0.264 0.736 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.093 0.907 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.691 -6.720 14.441 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.075 4.075 3 N -0.252 5.252 4 C 0.071 3.929 5 C -0.587 4.587 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.562 5.562 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.201 1.201 13 C -0.011 4.011 14 H 0.047 0.953 15 C -0.227 4.227 16 S 0.086 5.914 17 C -0.205 4.205 18 C -0.139 4.139 19 C -0.127 4.127 20 C -0.139 4.139 21 C -0.132 4.132 22 C -0.100 4.100 23 C -0.114 4.114 24 H 0.080 0.920 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.034 0.966 28 H 0.106 0.894 29 H 0.037 0.963 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.147 0.853 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.162 0.838 38 H 0.111 0.889 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.964 -5.550 13.929 18.003 hybrid contribution -0.326 -0.993 -1.459 1.795 sum 9.639 -6.542 12.470 17.065 Atomic orbital electron populations 1.21660 0.94711 1.01804 1.01069 1.22058 0.96404 0.89283 0.99804 1.62595 1.09406 1.15353 1.37881 1.19496 0.95405 0.93121 0.84904 1.21841 1.26219 1.17570 0.93048 0.93307 1.25627 0.95529 0.95419 1.01475 1.70026 1.35809 1.27296 1.23046 0.85851 0.79016 0.79009 0.79352 1.19576 1.20574 1.20092 1.21278 0.89882 0.93261 0.96680 0.95277 1.23753 0.91979 1.00882 1.06126 1.85433 1.07560 1.43987 1.54439 1.21596 0.97538 0.99533 1.01860 1.21098 0.92754 1.00462 0.99543 1.21377 1.01268 0.93946 0.96062 1.21441 0.92591 0.99713 1.00196 1.21490 0.97228 0.97317 0.97164 1.19807 0.94719 0.96212 0.99229 1.20339 0.91394 1.02468 0.97177 0.91964 0.95103 0.90726 0.96623 0.89419 0.96295 0.97239 0.92708 0.88563 0.88337 0.85285 0.82565 0.82581 0.83847 0.88877 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.58 71.98 0.69 -3.87 16 2 C 0.05 1.91 5.22 86.30 0.45 2.36 16 3 N -0.53 -21.59 4.60 -876.68 -4.03 -25.62 16 4 C 0.20 10.00 4.53 85.56 0.39 10.38 16 5 C -0.55 -30.02 7.56 25.60 0.19 -29.83 16 6 H 0.05 2.70 5.84 -2.91 -0.02 2.69 16 7 C 0.02 1.08 5.46 84.65 0.46 1.54 16 8 N -0.92 -54.48 13.29 21.45 0.28 -54.20 16 9 Si 0.94 44.67 29.54 68.60 2.03 46.69 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 C 0.10 3.79 1.50 44.72 0.07 3.86 16 14 H 0.03 1.32 6.31 -2.39 -0.02 1.31 16 15 C -0.08 -3.01 5.85 72.16 0.42 -2.59 16 16 S -0.16 -5.63 21.99 -56.49 -1.24 -6.87 16 17 C -0.09 -2.88 6.05 22.59 0.14 -2.74 16 18 C -0.12 -2.96 9.65 22.49 0.22 -2.74 16 19 C -0.11 -2.08 10.06 22.18 0.22 -1.86 16 20 C -0.12 -2.18 10.03 22.18 0.22 -1.96 16 21 C -0.11 -2.48 9.48 22.42 0.21 -2.27 16 22 C -0.09 -2.67 5.78 -19.82 -0.11 -2.79 16 23 C -0.08 -2.29 4.35 29.27 0.13 -2.16 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.03 1.23 6.74 -2.39 -0.02 1.21 16 26 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.02 0.65 6.73 -2.39 -0.02 0.63 16 28 H 0.09 2.60 5.84 -2.39 -0.01 2.58 16 29 H 0.02 1.04 6.32 -2.39 -0.02 1.03 16 30 H 0.01 0.53 6.10 -2.39 -0.01 0.51 16 31 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.10 4.27 5.89 -2.39 -0.01 4.25 16 33 H 0.10 3.40 8.08 -2.39 -0.02 3.39 16 34 H 0.13 3.05 8.05 -2.91 -0.02 3.03 16 35 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.14 2.45 8.02 -2.91 -0.02 2.43 16 38 H 0.09 2.52 5.94 -2.39 -0.01 2.51 16 39 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -62.87 314.52 1.78 -61.10 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 1.04 Total: 13.57 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 3.70 Total: -34.67 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -3.75 Total: -79.82 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -1.24 Total: -6.87 kcal Total: -62.87 1.78 -61.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172202310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.150 kcal (2) G-P(sol) polarization free energy of solvation -62.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds