Wall clock time and date at job start Mon Mar 30 2020 01:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47186 * 2 1 4 4 C 1.46903 * 111.00015 * 65.28972 * 3 2 1 5 5 C 1.50698 * 109.47320 * 66.25693 * 4 3 2 6 6 H 1.08006 * 119.99855 * 2.92485 * 5 4 3 7 7 C 1.37875 * 120.00293 * 182.92385 * 5 4 3 8 8 N 1.31518 * 119.99566 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00342 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47210 * 89.99886 * 9 7 5 11 11 H 1.48495 * 109.47489 * 209.99936 * 9 7 5 12 12 H 1.48504 * 109.47036 * 330.00358 * 9 7 5 13 13 C 1.46903 * 110.99945 * 189.24273 * 3 2 1 14 14 H 1.09002 * 109.55016 * 300.22587 * 13 3 2 15 15 C 1.53520 * 109.63178 * 179.97438 * 13 3 2 16 16 S 1.81619 * 107.31649 * 167.54966 * 15 13 3 17 17 C 1.76448 * 102.63451 * 46.43791 * 16 15 13 18 18 C 1.39626 * 117.72682 * 167.18543 * 17 16 15 19 19 C 1.37748 * 120.62440 * 178.96074 * 18 17 16 20 20 C 1.38339 * 119.50934 * 359.44512 * 19 18 17 21 21 C 1.37765 * 120.01247 * 0.85573 * 20 19 18 22 22 C 1.38178 * 122.29729 * 346.48272 * 17 16 15 23 23 C 1.50041 * 124.74388 * 2.07111 * 22 17 16 24 24 H 1.09003 * 109.46793 * 293.33392 * 1 2 3 25 25 H 1.09004 * 109.46903 * 53.32411 * 1 2 3 26 26 H 1.08992 * 109.47256 * 173.33004 * 1 2 3 27 27 H 1.09001 * 109.46746 * 239.99750 * 2 1 3 28 28 H 1.09004 * 109.46817 * 120.00301 * 2 1 3 29 29 H 1.09007 * 109.46928 * 186.25736 * 4 3 2 30 30 H 1.09001 * 109.47208 * 306.25197 * 4 3 2 31 31 H 0.97005 * 119.99814 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.88845 * 287.00223 * 15 13 3 33 33 H 1.08997 * 109.88716 * 48.02612 * 15 13 3 34 34 H 1.08002 * 119.68709 * 358.68297 * 18 17 16 35 35 H 1.08002 * 120.24264 * 179.71559 * 19 18 17 36 36 H 1.08007 * 119.99311 * 180.59191 * 20 19 18 37 37 H 1.07996 * 119.47155 * 179.76259 * 21 20 19 38 38 H 1.08999 * 108.66893 * 97.70988 * 23 22 17 39 39 H 1.09007 * 108.66540 * 215.60075 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6547 2.0724 1.2459 5 6 2.3849 1.4387 2.4018 6 1 3.0890 0.6395 2.2229 7 6 2.1541 1.8791 3.6878 8 7 1.2963 2.8520 3.9057 9 14 3.0587 1.0932 5.1207 10 1 4.3291 1.8227 5.3642 11 1 2.2098 1.1578 6.3374 12 1 3.3565 -0.3258 4.7997 13 6 3.4714 1.4300 -0.2203 14 1 3.9778 0.8776 0.5713 15 6 3.9488 2.8891 -0.2150 16 16 5.7621 2.8642 -0.1158 17 6 6.1982 1.6549 -1.3244 18 6 7.5383 1.5738 -1.7082 19 6 7.9484 0.6373 -2.6313 20 6 7.0228 -0.2369 -3.1725 21 6 5.6987 -0.1555 -2.8007 22 6 5.2685 0.7953 -1.8776 23 6 3.8010 0.8073 -1.5657 24 1 -0.3633 0.4071 0.9437 25 1 -0.3633 0.6138 -0.8243 26 1 -0.3633 -1.0206 -0.1194 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.9307 3.1245 1.1746 30 1 0.5796 1.9889 1.4054 31 1 1.1342 3.1621 4.8104 32 1 3.6345 3.3854 -1.1332 33 1 3.5363 3.4111 0.6483 34 1 8.2593 2.2548 -1.2805 35 1 8.9857 0.5830 -2.9271 36 1 7.3375 -0.9805 -3.8897 37 1 4.9829 -0.8398 -3.2315 38 1 3.2832 1.3662 -2.3451 39 1 3.4341 -0.2192 -1.5742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172202311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:56 Heat of formation + Delta-G solvation = 25.878563 kcal Electronic energy + Delta-G solvation = -19635.870746 eV Core-core repulsion = 16862.127454 eV Total energy + Delta-G solvation = -2773.743292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.37147 -37.75230 -33.80834 -32.46884 -31.02867 -30.70605 -28.62614 -27.14671 -25.80328 -23.29919 -22.55266 -21.94800 -20.75453 -19.13942 -17.49281 -16.24833 -15.78466 -15.70686 -15.21578 -14.71550 -14.40101 -14.13379 -13.81509 -13.46291 -13.19580 -12.76915 -12.56935 -12.47030 -12.23025 -11.63909 -11.51033 -11.43319 -11.15844 -11.03228 -10.83751 -10.77743 -10.51602 -10.28575 -10.17222 -9.93413 -9.67521 -9.48407 -9.39493 -8.62830 -8.44698 -7.29619 -7.06789 -6.06990 -4.15671 1.33618 1.41805 1.97081 2.76224 3.26868 3.33754 3.36831 3.76516 4.38911 4.68490 4.91279 4.98875 5.09269 5.22969 5.26693 5.31103 5.44482 5.59287 5.78247 5.82715 5.84146 5.91216 6.01445 6.04182 6.10171 6.21088 6.35155 6.42840 6.51480 6.53240 6.60094 6.63650 6.79387 6.87459 6.99574 7.16023 7.48703 7.85429 7.95550 8.16468 8.22732 8.93259 9.51824 10.98030 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.006050 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.254860 B = 4626.614303 C = 5363.940598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 N -0.534 5.534 4 C 0.181 3.819 5 C -0.548 4.548 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.890 5.890 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.095 3.905 14 H 0.063 0.937 15 C -0.086 4.086 16 S -0.129 6.129 17 C -0.071 4.071 18 C -0.104 4.104 19 C -0.114 4.114 20 C -0.129 4.129 21 C -0.110 4.110 22 C -0.073 4.073 23 C -0.087 4.087 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.031 0.969 30 H 0.041 0.959 31 H 0.262 0.738 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.082 0.918 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.606 -4.150 -12.645 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 N -0.259 5.259 4 C 0.056 3.944 5 C -0.587 4.587 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.015 4.015 14 H 0.081 0.919 15 C -0.234 4.234 16 S 0.115 5.885 17 C -0.184 4.184 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.149 4.149 21 C -0.130 4.130 22 C -0.080 4.080 23 C -0.124 4.124 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.100 0.900 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.895 -3.019 -12.075 14.739 hybrid contribution 0.122 -1.591 0.838 1.802 sum 8.017 -4.610 -11.237 14.553 Atomic orbital electron populations 1.21714 0.95729 0.99960 1.02496 1.21936 0.95492 0.90533 0.99521 1.62636 1.09443 1.14805 1.38985 1.19877 0.97227 0.93964 0.83333 1.21677 1.24926 1.19734 0.92360 0.92556 1.24906 0.94905 0.94851 0.98783 1.69936 1.34259 1.27288 1.21343 0.86698 0.79903 0.79899 0.82225 1.20463 1.21171 1.19988 1.21314 0.91555 0.93360 0.95311 0.91880 1.23965 0.90939 1.01167 1.07340 1.85488 1.08993 1.47638 1.46354 1.21548 0.96259 0.99894 1.00651 1.20881 0.93905 0.99656 0.98299 1.20950 0.99367 0.95759 0.97296 1.20969 0.93365 0.99726 1.00876 1.21207 0.96090 0.98148 0.97513 1.19743 0.95292 0.95402 0.97562 1.20455 0.90546 1.02649 0.98800 0.91875 0.92893 0.93723 0.92900 0.93989 0.95108 0.94135 0.92789 0.89594 0.85078 0.85842 0.85918 0.86221 0.86197 0.90001 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.65 37.16 0.36 -2.06 16 2 C 0.05 0.99 5.33 -3.82 -0.02 0.97 16 3 N -0.53 -10.69 4.59 -228.44 -1.05 -11.73 16 4 C 0.18 4.37 4.46 -4.98 -0.02 4.34 16 5 C -0.55 -14.41 7.57 -34.44 -0.26 -14.67 16 6 H 0.06 1.51 5.86 -52.48 -0.31 1.20 16 7 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 8 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 9 Si 0.88 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.09 1.78 1.42 -68.01 -0.10 1.68 16 14 H 0.06 1.37 6.33 -51.93 -0.33 1.04 16 15 C -0.09 -1.58 5.78 37.43 0.22 -1.36 16 16 S -0.13 -2.24 21.99 -107.50 -2.36 -4.61 16 17 C -0.07 -1.13 6.05 -39.09 -0.24 -1.36 16 18 C -0.10 -1.43 9.65 -39.24 -0.38 -1.81 16 19 C -0.11 -1.34 10.06 -39.72 -0.40 -1.74 16 20 C -0.13 -1.49 10.03 -39.72 -0.40 -1.88 16 21 C -0.11 -1.42 9.48 -39.35 -0.37 -1.79 16 22 C -0.07 -1.12 5.77 -104.56 -0.60 -1.72 16 23 C -0.09 -1.36 4.45 -28.77 -0.13 -1.49 16 24 H 0.06 1.23 6.73 -51.93 -0.35 0.88 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.85 5.84 -51.93 -0.30 0.55 16 28 H 0.04 0.87 6.80 -51.93 -0.35 0.52 16 29 H 0.03 0.79 6.14 -51.93 -0.32 0.47 16 30 H 0.04 1.05 6.32 -51.93 -0.33 0.73 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 33 H 0.13 2.73 5.84 -51.93 -0.30 2.42 16 34 H 0.12 1.54 8.05 -52.49 -0.42 1.12 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.12 1.31 8.01 -52.49 -0.42 0.89 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.20 5.94 -51.93 -0.31 0.89 16 LS Contribution 314.66 15.07 4.74 4.74 Total: -1.00 -27.88 314.66 -10.80 -38.68 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.41 Total: 2.39 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -2.44 Total: -21.13 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.31 Total: -36.39 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.36 Total: -4.61 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.88 -10.80 -38.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172202311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.562 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds