Wall clock time and date at job start Mon Mar 30 2020 01:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47186 * 2 1 4 4 C 1.46903 * 111.00015 * 65.28972 * 3 2 1 5 5 C 1.50698 * 109.47320 * 66.25693 * 4 3 2 6 6 H 1.08006 * 119.99855 * 2.92485 * 5 4 3 7 7 C 1.37875 * 120.00293 * 182.92385 * 5 4 3 8 8 N 1.31518 * 119.99566 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00342 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47210 * 89.99886 * 9 7 5 11 11 H 1.48495 * 109.47489 * 209.99936 * 9 7 5 12 12 H 1.48504 * 109.47036 * 330.00358 * 9 7 5 13 13 C 1.46903 * 110.99945 * 189.24273 * 3 2 1 14 14 H 1.09002 * 109.55016 * 300.22587 * 13 3 2 15 15 C 1.53520 * 109.63178 * 179.97438 * 13 3 2 16 16 S 1.81619 * 107.31649 * 167.54966 * 15 13 3 17 17 C 1.76448 * 102.63451 * 46.43791 * 16 15 13 18 18 C 1.39626 * 117.72682 * 167.18543 * 17 16 15 19 19 C 1.37748 * 120.62440 * 178.96074 * 18 17 16 20 20 C 1.38339 * 119.50934 * 359.44512 * 19 18 17 21 21 C 1.37765 * 120.01247 * 0.85573 * 20 19 18 22 22 C 1.38178 * 122.29729 * 346.48272 * 17 16 15 23 23 C 1.50041 * 124.74388 * 2.07111 * 22 17 16 24 24 H 1.09003 * 109.46793 * 293.33392 * 1 2 3 25 25 H 1.09004 * 109.46903 * 53.32411 * 1 2 3 26 26 H 1.08992 * 109.47256 * 173.33004 * 1 2 3 27 27 H 1.09001 * 109.46746 * 239.99750 * 2 1 3 28 28 H 1.09004 * 109.46817 * 120.00301 * 2 1 3 29 29 H 1.09007 * 109.46928 * 186.25736 * 4 3 2 30 30 H 1.09001 * 109.47208 * 306.25197 * 4 3 2 31 31 H 0.97005 * 119.99814 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.88845 * 287.00223 * 15 13 3 33 33 H 1.08997 * 109.88716 * 48.02612 * 15 13 3 34 34 H 1.08002 * 119.68709 * 358.68297 * 18 17 16 35 35 H 1.08002 * 120.24264 * 179.71559 * 19 18 17 36 36 H 1.08007 * 119.99311 * 180.59191 * 20 19 18 37 37 H 1.07996 * 119.47155 * 179.76259 * 21 20 19 38 38 H 1.08999 * 108.66893 * 97.70988 * 23 22 17 39 39 H 1.09007 * 108.66540 * 215.60075 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6547 2.0724 1.2459 5 6 2.3849 1.4387 2.4018 6 1 3.0890 0.6395 2.2229 7 6 2.1541 1.8791 3.6878 8 7 1.2963 2.8520 3.9057 9 14 3.0587 1.0932 5.1207 10 1 4.3291 1.8227 5.3642 11 1 2.2098 1.1578 6.3374 12 1 3.3565 -0.3258 4.7997 13 6 3.4714 1.4300 -0.2203 14 1 3.9778 0.8776 0.5713 15 6 3.9488 2.8891 -0.2150 16 16 5.7621 2.8642 -0.1158 17 6 6.1982 1.6549 -1.3244 18 6 7.5383 1.5738 -1.7082 19 6 7.9484 0.6373 -2.6313 20 6 7.0228 -0.2369 -3.1725 21 6 5.6987 -0.1555 -2.8007 22 6 5.2685 0.7953 -1.8776 23 6 3.8010 0.8073 -1.5657 24 1 -0.3633 0.4071 0.9437 25 1 -0.3633 0.6138 -0.8243 26 1 -0.3633 -1.0206 -0.1194 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.9307 3.1245 1.1746 30 1 0.5796 1.9889 1.4054 31 1 1.1342 3.1621 4.8104 32 1 3.6345 3.3854 -1.1332 33 1 3.5363 3.4111 0.6483 34 1 8.2593 2.2548 -1.2805 35 1 8.9857 0.5830 -2.9271 36 1 7.3375 -0.9805 -3.8897 37 1 4.9829 -0.8398 -3.2315 38 1 3.2832 1.3662 -2.3451 39 1 3.4341 -0.2192 -1.5742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172202311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:56 Heat of formation + Delta-G solvation = 11.002848 kcal Electronic energy + Delta-G solvation = -19636.515806 eV Core-core repulsion = 16862.127454 eV Total energy + Delta-G solvation = -2774.388351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54983 -39.21053 -35.31623 -34.36704 -32.28107 -31.81119 -30.23312 -28.64792 -27.45508 -25.03382 -23.63144 -23.26692 -22.10646 -20.79469 -18.72707 -18.21183 -17.16865 -16.98768 -16.61064 -16.36728 -15.75363 -15.55913 -15.12461 -14.97461 -14.47071 -14.23298 -13.97296 -13.82734 -13.70312 -13.15888 -13.09282 -12.85451 -12.79953 -12.56648 -12.27579 -12.15376 -12.13941 -12.00949 -11.85098 -11.75553 -11.24723 -10.92817 -10.61387 -10.56562 -9.65351 -9.06918 -8.38470 -8.16120 -6.32851 0.29320 0.41502 0.65671 1.32397 1.34655 1.42423 1.42847 2.35444 2.76175 3.09806 3.24404 3.64475 3.82690 3.93312 4.04323 4.21104 4.31379 4.34777 4.51565 4.52500 4.56900 4.59520 4.68142 4.80198 4.84566 4.90209 5.04642 5.09957 5.20007 5.23089 5.28211 5.37268 5.41223 5.45413 5.52370 5.59166 5.77542 6.03018 6.05686 6.22973 6.48362 6.86142 7.37571 8.86021 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.006050 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.254860 B = 4626.614303 C = 5363.940598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.052 3.948 3 N -0.528 5.528 4 C 0.197 3.803 5 C -0.546 4.546 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.922 5.922 9 Si 0.942 3.058 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.271 1.271 13 C 0.101 3.899 14 H 0.029 0.971 15 C -0.080 4.080 16 S -0.158 6.158 17 C -0.093 4.093 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.093 4.093 23 C -0.076 4.076 24 H 0.030 0.970 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.015 0.985 29 H 0.011 0.989 30 H 0.019 0.981 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.089 0.911 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.171 -6.349 -14.921 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.076 4.076 3 N -0.252 5.252 4 C 0.070 3.930 5 C -0.585 4.585 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.562 5.562 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.205 1.205 12 H -0.196 1.196 13 C -0.009 4.009 14 H 0.047 0.953 15 C -0.228 4.228 16 S 0.086 5.914 17 C -0.205 4.205 18 C -0.139 4.139 19 C -0.127 4.127 20 C -0.139 4.139 21 C -0.132 4.132 22 C -0.100 4.100 23 C -0.113 4.113 24 H 0.049 0.951 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.034 0.966 29 H 0.028 0.972 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.147 0.853 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.161 0.839 38 H 0.107 0.893 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.467 -5.237 -14.370 17.988 hybrid contribution -0.272 -0.960 1.432 1.745 sum 9.195 -6.197 -12.938 17.040 Atomic orbital electron populations 1.21658 0.94612 1.01822 1.01099 1.22059 0.96473 0.89274 0.99807 1.62599 1.10600 1.15783 1.36256 1.19509 0.95497 0.93262 0.84699 1.21868 1.24347 1.19117 0.93204 0.93301 1.25623 0.95751 0.95432 1.01241 1.70036 1.35688 1.28597 1.21859 0.85791 0.78755 0.79093 0.79538 1.20365 1.20475 1.19564 1.21258 0.89948 0.93348 0.96392 0.95289 1.23766 0.91917 1.00832 1.06274 1.85437 1.07928 1.49485 1.48582 1.21597 0.97622 1.00162 1.01153 1.21098 0.93070 1.00631 0.99051 1.21378 1.01205 0.94355 0.95713 1.21442 0.92535 0.99616 1.00349 1.21491 0.97500 0.97541 0.96667 1.19806 0.94668 0.96551 0.98931 1.20322 0.91623 1.02901 0.96474 0.95093 0.91893 0.90718 0.89531 0.96645 0.97152 0.96336 0.92718 0.88486 0.88425 0.85285 0.82567 0.82582 0.83852 0.89254 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 9.65 71.98 0.69 -3.80 16 2 C 0.05 1.89 5.33 86.30 0.46 2.35 16 3 N -0.53 -21.57 4.59 -876.64 -4.02 -25.59 16 4 C 0.20 9.95 4.46 85.56 0.38 10.34 16 5 C -0.55 -29.88 7.57 25.60 0.19 -29.69 16 6 H 0.05 2.71 5.86 -2.91 -0.02 2.69 16 7 C 0.02 1.08 5.46 84.65 0.46 1.54 16 8 N -0.92 -54.38 13.29 21.45 0.28 -54.09 16 9 Si 0.94 44.72 29.54 68.60 2.03 46.74 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 C 0.10 3.85 1.42 44.72 0.06 3.91 16 14 H 0.03 1.31 6.33 -2.39 -0.02 1.30 16 15 C -0.08 -3.05 5.78 72.16 0.42 -2.64 16 16 S -0.16 -5.66 21.99 -56.49 -1.24 -6.90 16 17 C -0.09 -2.88 6.05 22.59 0.14 -2.75 16 18 C -0.12 -2.96 9.65 22.49 0.22 -2.74 16 19 C -0.11 -2.08 10.06 22.18 0.22 -1.86 16 20 C -0.12 -2.18 10.03 22.18 0.22 -1.96 16 21 C -0.11 -2.48 9.48 22.42 0.21 -2.27 16 22 C -0.09 -2.67 5.77 -19.82 -0.11 -2.79 16 23 C -0.08 -2.28 4.45 29.27 0.13 -2.14 16 24 H 0.03 1.21 6.73 -2.39 -0.02 1.20 16 25 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.09 2.58 5.84 -2.39 -0.01 2.57 16 28 H 0.02 0.64 6.80 -2.39 -0.02 0.62 16 29 H 0.01 0.57 6.14 -2.38 -0.01 0.56 16 30 H 0.02 1.02 6.32 -2.39 -0.02 1.00 16 31 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 32 H 0.10 3.40 8.08 -2.39 -0.02 3.38 16 33 H 0.10 4.39 5.84 -2.39 -0.01 4.37 16 34 H 0.13 3.05 8.05 -2.91 -0.02 3.03 16 35 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.14 2.45 8.01 -2.91 -0.02 2.43 16 38 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.09 2.51 5.94 -2.38 -0.01 2.50 16 Total: -1.00 -62.72 314.66 1.79 -60.92 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.04 Total: 13.41 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 3.70 Total: -34.50 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -3.73 Total: -79.69 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: -5.66 SS G_CDS: -1.24 Total: -6.90 kcal Total: -62.72 1.79 -60.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172202311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.928 kcal (2) G-P(sol) polarization free energy of solvation -62.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds