Wall clock time and date at job start Mon Mar 30 2020 01:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00327 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46725 * 60.00093 * 10 8 6 12 12 H 1.48505 * 109.46988 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47116 * 300.00069 * 10 8 6 14 14 N 1.46497 * 109.47224 * 240.00747 * 2 1 3 15 15 C 1.38366 * 120.00368 * 84.99407 * 14 2 1 16 16 N 1.32865 * 120.72730 * 359.72382 * 15 14 2 17 17 C 1.32526 * 121.14267 * 179.67168 * 16 15 14 18 18 O 1.35502 * 118.84714 * 180.31746 * 17 16 15 19 19 N 1.32150 * 122.30522 * 0.64690 * 17 16 15 20 20 C 1.32929 * 120.59259 * 359.66820 * 19 17 16 21 21 N 1.37191 * 134.83694 * 180.02562 * 20 19 17 22 22 H 0.97004 * 126.28021 * 359.96242 * 21 20 19 23 23 C 1.36414 * 107.43999 * 179.97438 * 21 20 19 24 24 N 1.30098 * 109.96222 * 0.02562 * 23 21 20 25 25 C 1.35560 * 109.43757 * 359.97438 * 24 23 21 26 26 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 27 27 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 28 28 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 30 30 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 31 31 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 32 32 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 33 33 H 0.97000 * 120.00354 * 180.02562 * 9 8 6 34 34 H 0.97001 * 119.99762 * 264.99736 * 14 2 1 35 35 H 0.96700 * 113.99607 * 270.31987 * 18 17 16 36 36 H 1.08006 * 125.01736 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 6 4.0673 -1.3243 2.5437 7 1 3.3689 -1.8047 3.2127 8 6 5.4187 -1.3613 2.8148 9 7 6.2692 -0.7767 1.9998 10 14 6.0414 -2.2421 4.3399 11 1 5.6479 -3.6728 4.2805 12 1 7.5215 -2.1384 4.4017 13 1 5.4499 -1.6158 5.5494 14 7 2.0183 -0.6904 -1.1962 15 6 2.1504 -0.0001 -2.3881 16 7 1.8333 1.2878 -2.4654 17 6 1.9627 1.9586 -3.6010 18 8 1.6318 3.2723 -3.6257 19 7 2.3971 1.3895 -4.7118 20 6 2.7314 0.1030 -4.7269 21 7 3.2020 -0.7630 -5.6811 22 1 3.3877 -0.5491 -6.6089 23 6 3.3605 -1.9803 -5.0860 24 7 3.0166 -1.9103 -3.8333 25 6 2.6171 -0.6474 -3.5449 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7716 1.2054 30 1 1.6054 -0.2618 2.1369 31 1 3.9995 -1.0727 0.4258 32 1 3.8532 0.4370 1.3572 33 1 7.2199 -0.8031 2.1903 34 1 2.2491 -1.6316 -1.1527 35 1 0.7059 3.4405 -3.8482 36 1 3.7178 -2.8707 -5.5819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:41 Heat of formation + Delta-G solvation = 52.740084 kcal Electronic energy + Delta-G solvation = -21079.198953 eV Core-core repulsion = 17792.620000 eV Total energy + Delta-G solvation = -3286.578952 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.42855 -39.60189 -37.81683 -36.24472 -34.13705 -32.92195 -32.05834 -31.11469 -29.39575 -28.38618 -25.20395 -23.87503 -23.60894 -21.70383 -21.37946 -20.25439 -19.55492 -18.79659 -17.05724 -17.01507 -16.34720 -15.99798 -15.47388 -14.93754 -14.59793 -14.48370 -14.39738 -13.58448 -13.06750 -12.63602 -12.55929 -12.18117 -12.01003 -11.77849 -11.61915 -11.44657 -11.24550 -10.90548 -10.54129 -10.46967 -10.31222 -9.87476 -9.79583 -9.38831 -9.16593 -9.01333 -8.89735 -8.32780 -7.59809 -5.97001 -4.00412 0.86515 1.46345 2.32948 2.70313 3.18157 3.34612 3.39249 3.41240 3.51134 3.93785 4.11641 4.47356 4.60553 4.69423 4.95640 5.37494 5.38796 5.47920 5.60946 5.67870 5.78388 6.10554 6.15622 6.23980 6.35494 6.50400 6.69363 6.77864 7.04181 7.09832 7.25078 7.44839 7.69490 7.75047 7.79315 7.82875 8.02228 8.38351 8.43146 9.06797 9.63719 11.13902 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.018491 B = 0.004534 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.871948 B = 6173.497025 C = 6782.204783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.092 0.908 4 C -0.121 4.121 5 C 0.022 3.978 6 C -0.523 4.523 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.661 5.661 15 C 0.533 3.467 16 N -0.592 5.592 17 C 0.562 3.438 18 O -0.454 6.454 19 N -0.583 5.583 20 C 0.320 3.680 21 N -0.581 5.581 22 H 0.428 0.572 23 C 0.239 3.761 24 N -0.450 5.450 25 C -0.119 4.119 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.018 0.982 32 H 0.015 0.985 33 H 0.261 0.739 34 H 0.421 0.579 35 H 0.408 0.592 36 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.769 0.237 -15.922 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.036 3.964 3 H 0.110 0.890 4 C -0.159 4.159 5 C -0.015 4.015 6 C -0.562 4.562 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.532 5.532 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.289 5.289 15 C 0.278 3.722 16 N -0.333 5.333 17 C 0.254 3.746 18 O -0.256 6.256 19 N -0.323 5.323 20 C 0.078 3.922 21 N -0.197 5.197 22 H 0.267 0.733 23 C -0.049 4.049 24 N -0.168 5.168 25 C -0.246 4.246 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.259 0.741 35 H 0.267 0.733 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.328 0.787 -14.970 18.204 hybrid contribution 0.525 -0.864 -0.413 1.092 sum -9.803 -0.077 -15.384 18.242 Atomic orbital electron populations 1.22170 0.96019 1.01529 1.01881 1.21372 0.92905 0.98178 0.83959 0.88983 1.22007 1.00757 0.98971 0.94158 1.19095 0.88001 0.97300 0.97067 1.21203 0.91965 1.34567 1.08437 0.92743 1.25022 0.97104 0.95595 0.96623 1.69964 1.02410 1.43888 1.36974 0.86677 0.77629 0.80209 0.83577 1.20265 1.21343 1.20251 1.45025 1.64826 1.13085 1.05980 1.17424 0.84047 0.86209 0.84473 1.67534 1.30684 1.06316 1.28809 1.19244 0.88945 0.84367 0.82041 1.84736 1.33659 1.15818 1.91413 1.66546 1.25535 1.08913 1.31276 1.18183 0.96713 0.88723 0.88585 1.42754 1.55530 1.09065 1.12375 0.73254 1.25342 1.01746 0.88490 0.89298 1.70205 1.15304 1.18201 1.13100 1.19623 1.16081 0.93428 0.95486 0.91613 0.92810 0.92957 0.92725 0.91363 0.96409 0.96624 0.92974 0.74074 0.73347 0.75914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.50 37.16 0.35 -1.84 16 2 C 0.14 2.39 2.60 -67.93 -0.18 2.21 16 3 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 4 C -0.12 -2.37 4.69 -26.73 -0.13 -2.50 16 5 C 0.02 0.58 4.86 -27.88 -0.14 0.44 16 6 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 7 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 N -0.66 -11.41 4.66 -53.61 -0.25 -11.66 16 15 C 0.53 9.36 7.53 -154.71 -1.16 8.20 16 16 N -0.59 -10.24 9.37 -13.76 -0.13 -10.37 16 17 C 0.56 9.01 8.68 -91.22 -0.79 8.22 16 18 O -0.45 -5.96 13.64 -18.20 -0.25 -6.21 16 19 N -0.58 -9.23 10.49 -14.05 -0.15 -9.38 16 20 C 0.32 4.80 8.50 -155.80 -1.32 3.47 16 21 N -0.58 -5.94 6.20 -13.24 -0.08 -6.03 16 22 H 0.43 2.74 8.96 -40.82 -0.37 2.38 16 23 C 0.24 2.41 12.99 -89.44 -1.16 1.25 16 24 N -0.45 -6.70 11.28 -11.82 -0.13 -6.83 16 25 C -0.12 -1.97 7.16 -84.51 -0.61 -2.58 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.02 0.48 7.75 -51.93 -0.40 0.08 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.42 7.22 8.62 -40.82 -0.35 6.87 16 35 H 0.41 2.92 9.06 45.56 0.41 3.33 16 36 H 0.22 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 315.80 15.07 4.76 4.76 Total: -1.00 -36.22 315.80 -9.66 -45.88 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.60 Total: 6.32 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -5.54 Total: 3.37 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -0.01 Total: -70.91 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.25 Total: -6.21 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.22 -9.66 -45.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.620 kcal (2) G-P(sol) polarization free energy of solvation -36.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds