Wall clock time and date at job start Mon Mar 30 2020 01:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 C 1.50706 * 109.46735 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99611 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00327 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46725 * 60.00093 * 10 8 6 12 12 H 1.48505 * 109.46988 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47116 * 300.00069 * 10 8 6 14 14 N 1.46497 * 109.47224 * 240.00747 * 2 1 3 15 15 C 1.38366 * 120.00368 * 84.99407 * 14 2 1 16 16 N 1.32865 * 120.72730 * 359.72382 * 15 14 2 17 17 C 1.32526 * 121.14267 * 179.67168 * 16 15 14 18 18 O 1.35502 * 118.84714 * 180.31746 * 17 16 15 19 19 N 1.32150 * 122.30522 * 0.64690 * 17 16 15 20 20 C 1.32929 * 120.59259 * 359.66820 * 19 17 16 21 21 N 1.37191 * 134.83694 * 180.02562 * 20 19 17 22 22 H 0.97004 * 126.28021 * 359.96242 * 21 20 19 23 23 C 1.36414 * 107.43999 * 179.97438 * 21 20 19 24 24 N 1.30098 * 109.96222 * 0.02562 * 23 21 20 25 25 C 1.35560 * 109.43757 * 359.97438 * 24 23 21 26 26 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 27 27 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 28 28 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 30 30 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 31 31 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 32 32 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 33 33 H 0.97000 * 120.00354 * 180.02562 * 9 8 6 34 34 H 0.97001 * 119.99762 * 264.99736 * 14 2 1 35 35 H 0.96700 * 113.99607 * 270.31987 * 18 17 16 36 36 H 1.08006 * 125.01736 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 6 4.0673 -1.3243 2.5437 7 1 3.3689 -1.8047 3.2127 8 6 5.4187 -1.3613 2.8148 9 7 6.2692 -0.7767 1.9998 10 14 6.0414 -2.2421 4.3399 11 1 5.6479 -3.6728 4.2805 12 1 7.5215 -2.1384 4.4017 13 1 5.4499 -1.6158 5.5494 14 7 2.0183 -0.6904 -1.1962 15 6 2.1504 -0.0001 -2.3881 16 7 1.8333 1.2878 -2.4654 17 6 1.9627 1.9586 -3.6010 18 8 1.6318 3.2723 -3.6257 19 7 2.3971 1.3895 -4.7118 20 6 2.7314 0.1030 -4.7269 21 7 3.2020 -0.7630 -5.6811 22 1 3.3877 -0.5491 -6.6089 23 6 3.3605 -1.9803 -5.0860 24 7 3.0166 -1.9103 -3.8333 25 6 2.6171 -0.6474 -3.5449 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7716 1.2054 30 1 1.6054 -0.2618 2.1369 31 1 3.9995 -1.0727 0.4258 32 1 3.8532 0.4370 1.3572 33 1 7.2199 -0.8031 2.1903 34 1 2.2491 -1.6316 -1.1527 35 1 0.7059 3.4405 -3.8482 36 1 3.7178 -2.8707 -5.5819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172485702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:41 Heat of formation + Delta-G solvation = 23.582217 kcal Electronic energy + Delta-G solvation = -21080.463333 eV Core-core repulsion = 17792.620000 eV Total energy + Delta-G solvation = -3287.843332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.48293 -40.71782 -39.08338 -37.43751 -35.66198 -34.65424 -33.20623 -32.53978 -31.03075 -29.52603 -27.06094 -25.08512 -24.76116 -23.31751 -22.51958 -21.72774 -20.71577 -19.86769 -18.47619 -18.23950 -18.09731 -17.19080 -16.73874 -16.50229 -16.01990 -15.82639 -15.28544 -14.95515 -14.54347 -14.36262 -14.22382 -13.54098 -13.17670 -13.05692 -12.98365 -12.81758 -12.77975 -12.69382 -12.36673 -11.98923 -11.70261 -11.43578 -11.39124 -11.10996 -10.78856 -10.54797 -10.35859 -10.09832 -8.79550 -8.18369 -6.30432 -0.24423 0.25604 1.35433 1.40154 1.43577 1.51279 1.75924 1.99522 2.41637 2.43113 2.75307 3.10034 3.14960 3.53585 3.61973 3.97565 4.15054 4.28587 4.38302 4.43924 4.72942 4.74223 4.92803 4.95819 5.06529 5.18404 5.25182 5.38604 5.52348 5.57224 5.70463 5.86528 6.00963 6.21380 6.24537 6.51600 6.62122 6.78453 6.88092 7.16809 7.39426 8.93062 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.018491 B = 0.004534 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.871948 B = 6173.497025 C = 6782.204783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.149 3.851 3 H 0.067 0.933 4 C -0.106 4.106 5 C 0.030 3.970 6 C -0.541 4.541 7 H 0.066 0.934 8 C -0.002 4.002 9 N -0.937 5.937 10 Si 0.965 3.035 11 H -0.264 1.264 12 H -0.287 1.287 13 H -0.265 1.265 14 N -0.669 5.669 15 C 0.511 3.489 16 N -0.607 5.607 17 C 0.549 3.451 18 O -0.458 6.458 19 N -0.585 5.585 20 C 0.303 3.697 21 N -0.562 5.562 22 H 0.448 0.552 23 C 0.275 3.725 24 N -0.499 5.499 25 C -0.138 4.138 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.078 0.922 31 H -0.009 1.009 32 H -0.022 1.022 33 H 0.261 0.739 34 H 0.418 0.582 35 H 0.431 0.569 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.422 -1.201 -16.556 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.045 3.955 3 H 0.086 0.914 4 C -0.144 4.144 5 C -0.007 4.007 6 C -0.579 4.579 7 H 0.084 0.916 8 C -0.200 4.200 9 N -0.577 5.577 10 Si 0.790 3.210 11 H -0.189 1.189 12 H -0.213 1.213 13 H -0.190 1.190 14 N -0.298 5.298 15 C 0.258 3.742 16 N -0.349 5.349 17 C 0.241 3.759 18 O -0.264 6.264 19 N -0.324 5.324 20 C 0.060 3.940 21 N -0.180 5.180 22 H 0.291 0.709 23 C -0.013 4.013 24 N -0.218 5.218 25 C -0.264 4.264 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.009 0.991 32 H -0.003 1.003 33 H 0.070 0.930 34 H 0.256 0.744 35 H 0.293 0.707 36 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -11.019 -0.624 -15.652 19.152 hybrid contribution 0.777 -0.429 -0.373 0.963 sum -10.242 -1.053 -16.025 19.047 Atomic orbital electron populations 1.22041 0.93038 1.02522 1.02640 1.21164 0.95021 0.96303 0.83012 0.91442 1.21802 0.96306 1.00245 0.96058 1.18940 0.92197 0.94300 0.95281 1.21712 0.92568 1.34426 1.09220 0.91628 1.26019 0.97471 0.96387 1.00105 1.70129 1.02701 1.45612 1.39272 0.85498 0.76830 0.79339 0.79359 1.18904 1.21255 1.19028 1.44928 1.65913 1.12878 1.06067 1.17650 0.85002 0.86608 0.84987 1.67502 1.31181 1.06571 1.29645 1.19444 0.89399 0.85081 0.81983 1.84694 1.35847 1.14342 1.91472 1.66629 1.25388 1.09344 1.31018 1.18495 0.97278 0.88743 0.89532 1.42809 1.54212 1.08190 1.12765 0.70853 1.26570 0.97384 0.89371 0.87951 1.70217 1.18145 1.17716 1.15738 1.19794 1.16372 0.94603 0.95674 0.90107 0.92725 0.91783 0.91511 0.90369 0.99090 1.00326 0.93012 0.74408 0.70670 0.70237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.50 71.98 0.68 -3.19 16 2 C 0.15 5.22 2.60 44.99 0.12 5.33 16 3 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 4 C -0.11 -4.21 4.69 30.59 0.14 -4.07 16 5 C 0.03 1.60 4.86 29.85 0.15 1.75 16 6 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 7 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 8 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 9 N -0.94 -59.00 13.29 21.45 0.28 -58.71 16 10 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 N -0.67 -23.97 4.66 -323.52 -1.51 -25.48 16 15 C 0.51 18.59 7.53 133.49 1.00 19.60 16 16 N -0.61 -21.74 9.37 -310.27 -2.91 -24.64 16 17 C 0.55 17.88 8.68 180.56 1.57 19.45 16 18 O -0.46 -12.03 13.64 -88.04 -1.20 -13.23 16 19 N -0.58 -18.40 10.49 -311.38 -3.27 -21.66 16 20 C 0.30 8.88 8.50 133.84 1.14 10.02 16 21 N -0.56 -10.13 6.20 -195.81 -1.21 -11.35 16 22 H 0.45 4.34 8.96 -92.71 -0.83 3.51 16 23 C 0.28 4.72 12.99 179.94 2.34 7.06 16 24 N -0.50 -14.43 11.28 -191.30 -2.16 -16.59 16 25 C -0.14 -4.62 7.16 39.67 0.28 -4.33 16 26 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 31 H -0.01 -0.54 7.75 -2.39 -0.02 -0.56 16 32 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 33 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 34 H 0.42 14.98 8.62 -92.71 -0.80 14.18 16 35 H 0.43 5.99 9.06 -74.06 -0.67 5.31 16 36 H 0.28 1.10 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -81.66 315.80 -2.98 -84.64 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -1.15 Total: 18.96 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 8.12 Total: 21.23 kcal Atomic # 7 Polarization: -147.67 SS G_CDS: -10.77 Total: -158.44 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -1.20 Total: -13.23 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -81.66 -2.98 -84.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.224 kcal (2) G-P(sol) polarization free energy of solvation -81.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds