Wall clock time and date at job start Mon Mar 30 2020 02:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86305 * 109.47080 * 2 1 4 4 C 1.86303 * 109.47427 * 239.99862 * 2 1 3 5 5 C 1.86304 * 109.46928 * 119.99695 * 2 1 3 6 6 N 1.46495 * 109.47190 * 299.99844 * 5 2 1 7 7 C 1.34774 * 119.99775 * 95.00063 * 6 5 2 8 8 O 1.21553 * 120.00179 * 359.97438 * 7 6 5 9 9 C 1.47891 * 120.00422 * 180.02562 * 7 6 5 10 10 C 1.39925 * 120.01710 * 359.72323 * 9 7 6 11 11 C 1.38334 * 120.35217 * 179.74293 * 10 9 7 12 12 C 1.37749 * 120.41123 * 0.55781 * 11 10 9 13 13 C 1.40751 * 120.04095 * 359.70033 * 12 11 10 14 14 C 1.41440 * 120.17487 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00240 * 24.43324 * 14 13 12 16 16 C 1.39938 * 119.99699 * 204.44053 * 14 13 12 17 17 N 1.30829 * 120.00238 * 17.87377 * 16 14 13 18 18 Si 1.86803 * 119.99967 * 197.88252 * 16 14 13 19 19 H 1.48500 * 109.47298 * 89.99435 * 18 16 14 20 20 H 1.48500 * 109.47011 * 209.99602 * 18 16 14 21 21 H 1.48508 * 109.46687 * 329.99406 * 18 16 14 22 22 C 1.38993 * 120.02899 * 180.02562 * 9 7 6 23 23 H 1.08996 * 109.47393 * 300.00595 * 1 2 3 24 24 H 1.08999 * 109.47087 * 60.00572 * 1 2 3 25 25 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46772 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.46693 * 299.99669 * 3 2 1 28 28 H 1.08990 * 109.47028 * 59.99977 * 3 2 1 29 29 H 1.09001 * 109.46582 * 299.99795 * 4 2 1 30 30 H 1.08992 * 109.46967 * 59.99647 * 4 2 1 31 31 H 1.08998 * 109.47451 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47135 * 60.00316 * 5 2 1 33 33 H 1.09002 * 109.46974 * 180.02562 * 5 2 1 34 34 H 0.96999 * 120.00691 * 275.00439 * 6 5 2 35 35 H 1.07997 * 119.82427 * 0.02562 * 10 9 7 36 36 H 1.07997 * 119.79129 * 180.28450 * 11 10 9 37 37 H 1.08005 * 119.97773 * 179.72544 * 12 11 10 38 38 H 0.96993 * 120.00019 * 180.02562 * 17 16 14 39 39 H 1.07994 * 120.19796 * 359.95545 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5211 5 6 2.4839 -0.8782 1.5212 6 7 1.9956 -0.1875 2.7173 7 6 0.8695 -0.6089 3.3262 8 8 0.2589 -1.5618 2.8827 9 6 0.3762 0.0886 4.5334 10 6 1.0813 1.1825 5.0471 11 6 0.6232 1.8433 6.1727 12 6 -0.5256 1.4253 6.8075 13 6 -1.2453 0.3235 6.3084 14 6 -2.4256 -0.1078 6.9577 15 1 -2.9949 0.5851 7.5595 16 6 -2.8556 -1.4324 6.8203 17 7 -2.0224 -2.3507 6.4030 18 14 -4.6193 -1.8894 7.2325 19 1 -5.4632 -1.7509 6.0185 20 1 -4.6676 -3.2942 7.7114 21 1 -5.1290 -0.9862 8.2955 22 6 -0.7848 -0.3460 5.1621 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.5739 1.7564 0.0005 27 1 2.1206 2.2702 -0.8900 28 1 2.1206 2.2703 0.8899 29 1 2.1207 -1.9059 -1.5210 30 1 2.1207 -0.3645 -2.4110 31 1 3.5740 -0.8787 -1.5209 32 1 2.1206 -1.9059 1.5212 33 1 3.5739 -0.8778 1.5215 34 1 2.4826 0.5731 3.0711 35 1 1.9856 1.5156 4.5595 36 1 1.1721 2.6895 6.5588 37 1 -0.8745 1.9437 7.6885 38 1 -2.3205 -3.2687 6.3074 39 1 -1.3299 -1.1925 4.7714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188687357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:49 Heat of formation + Delta-G solvation = -78.994521 kcal Electronic energy + Delta-G solvation = -18978.591650 eV Core-core repulsion = 16120.754296 eV Total energy + Delta-G solvation = -2857.837354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75777 -38.77714 -35.71490 -35.30175 -32.07597 -31.26405 -29.49955 -28.34563 -28.26316 -27.64862 -26.81269 -23.65207 -22.75668 -21.15816 -19.58172 -18.03815 -17.05995 -16.68031 -16.39962 -15.99702 -15.35062 -15.01292 -14.39650 -14.24132 -14.13605 -14.10873 -13.99065 -13.78030 -13.46936 -13.24384 -13.13850 -12.97845 -12.95944 -12.90831 -12.80613 -12.53205 -12.17569 -11.86371 -11.85300 -11.49564 -11.09020 -10.85131 -10.69945 -10.63710 -9.61898 -9.39836 -9.19718 -8.67197 -6.39015 0.41699 1.01016 1.34461 1.46957 1.49064 1.71342 2.01836 2.03730 2.16686 2.21546 2.56486 2.73164 2.83557 3.71350 4.10686 4.40963 4.54532 4.62035 4.72625 4.76010 4.88741 4.91204 4.91309 4.93466 4.95872 5.07351 5.08831 5.20757 5.32212 5.52378 5.53521 5.59775 5.65769 5.71181 5.88156 5.93710 6.06019 6.29477 6.54057 6.76067 6.87556 6.95300 7.44816 8.29419 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022826 B = 0.004579 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.360875 B = 6113.895190 C = 6825.928675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.475 4.475 2 Si 1.065 2.935 3 C -0.442 4.442 4 C -0.442 4.442 5 C -0.207 4.207 6 N -0.697 5.697 7 C 0.551 3.449 8 O -0.586 6.586 9 C -0.140 4.140 10 C -0.199 4.199 11 C -0.096 4.096 12 C -0.219 4.219 13 C 0.067 3.933 14 C -0.500 4.500 15 H 0.084 0.916 16 C 0.030 3.970 17 N -0.826 5.826 18 Si 0.982 3.018 19 H -0.267 1.267 20 H -0.269 1.269 21 H -0.249 1.249 22 C -0.135 4.135 23 H 0.035 0.965 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.414 0.586 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.107 0.893 38 H 0.286 0.714 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.449 6.178 -11.849 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.577 4.577 2 Si 1.256 2.744 3 C -0.552 4.552 4 C -0.551 4.551 5 C -0.374 4.374 6 N -0.349 5.349 7 C 0.340 3.660 8 O -0.468 6.468 9 C -0.143 4.143 10 C -0.219 4.219 11 C -0.114 4.114 12 C -0.239 4.239 13 C 0.064 3.936 14 C -0.529 4.529 15 H 0.102 0.898 16 C -0.185 4.185 17 N -0.452 5.452 18 Si 0.803 3.197 19 H -0.192 1.192 20 H -0.193 1.193 21 H -0.172 1.172 22 C -0.156 4.156 23 H 0.054 0.946 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.252 0.748 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.054 5.215 -12.160 16.617 hybrid contribution -1.091 -0.525 0.777 1.438 sum 8.963 4.690 -11.383 15.228 Atomic orbital electron populations 1.26596 1.25740 1.02676 1.02708 0.78697 0.63369 0.67832 0.64484 1.25998 1.07243 1.17247 1.04676 1.25983 1.07253 1.07618 1.14283 1.26961 1.05249 1.04214 1.01023 1.45292 1.25588 1.34723 1.29317 1.18657 0.81185 0.82773 0.83384 1.90649 1.59021 1.30130 1.67022 1.19884 0.98306 0.99219 0.96884 1.20907 1.02183 0.98210 1.00601 1.20939 0.95747 0.99325 0.95375 1.21406 0.98345 1.02056 1.02111 1.17952 0.92930 0.91997 0.90678 1.19881 1.08232 0.96229 1.28556 0.89838 1.26855 1.03326 0.95817 0.92521 1.69898 1.37450 1.03093 1.34768 0.85201 0.76582 0.78357 0.79583 1.19200 1.19343 1.17249 1.21453 0.97042 1.01151 0.95909 0.94560 0.90705 0.93672 0.89162 0.90409 0.91778 0.91786 0.90172 0.89274 0.91698 0.87018 0.74797 0.84211 0.84272 0.87450 0.90371 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -13.70 8.65 113.37 0.98 -12.72 16 2 Si 1.07 19.41 12.77 68.60 0.88 20.29 16 3 C -0.44 -6.53 8.65 113.37 0.98 -5.55 16 4 C -0.44 -6.35 8.65 113.37 0.98 -5.37 16 5 C -0.21 -5.00 5.31 127.77 0.68 -4.33 16 6 N -0.70 -21.29 4.64 -301.79 -1.40 -22.69 16 7 C 0.55 24.27 7.64 86.80 0.66 24.94 16 8 O -0.59 -30.59 15.84 -3.88 -0.06 -30.65 16 9 C -0.14 -6.71 5.87 -20.13 -0.12 -6.83 16 10 C -0.20 -7.85 9.55 22.70 0.22 -7.63 16 11 C -0.10 -3.82 10.01 22.18 0.22 -3.60 16 12 C -0.22 -10.42 9.78 22.77 0.22 -10.19 16 13 C 0.07 3.70 5.57 -21.32 -0.12 3.58 16 14 C -0.50 -27.83 9.05 23.47 0.21 -27.62 16 15 H 0.08 4.39 7.91 -2.91 -0.02 4.36 16 16 C 0.03 1.58 5.14 85.25 0.44 2.02 16 17 N -0.83 -47.28 10.95 21.83 0.24 -47.04 16 18 Si 0.98 40.58 29.60 68.60 2.03 42.61 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 22 C -0.13 -7.68 8.24 23.01 0.19 -7.49 16 23 H 0.03 1.25 7.96 -2.39 -0.02 1.23 16 24 H 0.07 1.81 7.96 -2.39 -0.02 1.79 16 25 H 0.04 1.48 7.96 -2.39 -0.02 1.46 16 26 H 0.09 0.96 7.96 -2.39 -0.02 0.95 16 27 H 0.08 1.04 7.96 -2.39 -0.02 1.02 16 28 H 0.06 1.09 7.96 -2.39 -0.02 1.07 16 29 H 0.06 1.03 7.96 -2.39 -0.02 1.02 16 30 H 0.08 1.02 7.96 -2.39 -0.02 1.00 16 31 H 0.09 0.96 7.96 -2.39 -0.02 0.94 16 32 H 0.06 1.95 7.10 -2.39 -0.02 1.94 16 33 H 0.11 1.81 7.96 -2.39 -0.02 1.79 16 34 H 0.41 9.88 6.85 -92.71 -0.63 9.25 16 35 H 0.14 4.04 6.38 -2.91 -0.02 4.02 16 36 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 37 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 38 H 0.29 15.08 8.30 -92.71 -0.77 14.31 16 39 H 0.10 6.17 5.74 -2.91 -0.02 6.15 16 Total: -1.00 -73.75 335.24 7.64 -66.11 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.40 Total: 32.16 kcal Atomic # 6 Polarization: -66.34 SS G_CDS: 5.55 Total: -60.79 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -1.16 Total: -69.73 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.06 Total: -30.65 kcal Atomic # 14 Polarization: 59.99 SS G_CDS: 2.91 Total: 62.90 kcal Total: -73.75 7.64 -66.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188687357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.887 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds