Wall clock time and date at job start Mon Mar 30 2020 02:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31878 * 119.58919 * 2 1 4 4 C 1.31841 * 121.75502 * 179.97438 * 3 2 1 5 5 C 1.38465 * 120.71988 * 359.97438 * 4 3 2 6 6 F 1.35099 * 120.44285 * 180.02562 * 5 4 3 7 7 C 1.38840 * 119.11375 * 359.74354 * 5 4 3 8 8 C 1.38187 * 119.59160 * 179.97438 * 2 1 3 9 9 C 1.50698 * 120.40061 * 0.02562 * 8 2 1 10 10 N 1.46906 * 109.47135 * 79.99837 * 9 8 2 11 11 C 1.46904 * 110.99972 * 189.99680 * 10 9 8 12 12 C 1.50704 * 109.47024 * 160.96949 * 11 10 9 13 13 H 1.07999 * 119.99785 * 355.35094 * 12 11 10 14 14 C 1.37872 * 119.99919 * 175.34774 * 12 11 10 15 15 N 1.31513 * 120.00052 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00158 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47105 * 89.99811 * 16 14 12 18 18 H 1.48499 * 109.47284 * 210.00114 * 16 14 12 19 19 H 1.48500 * 109.47115 * 330.00080 * 16 14 12 20 20 C 1.46900 * 110.99916 * 66.04511 * 10 9 8 21 21 C 1.53003 * 109.47374 * 61.81679 * 20 10 9 22 22 C 1.47191 * 109.47233 * 183.41044 * 21 20 10 23 23 N 6.66366 * 121.66885 * 214.86499 * 2 1 3 24 24 H 1.09004 * 109.47050 * 270.02091 * 1 2 3 25 25 H 1.09008 * 109.46969 * 30.01974 * 1 2 3 26 26 H 1.08995 * 109.47071 * 150.02258 * 1 2 3 27 27 H 1.07995 * 119.63959 * 180.02562 * 4 3 2 28 28 H 1.07995 * 120.80374 * 180.29711 * 7 5 4 29 29 H 1.08994 * 109.47497 * 320.00097 * 9 8 2 30 30 H 1.09004 * 109.47347 * 199.99656 * 9 8 2 31 31 H 1.09000 * 109.47022 * 280.97428 * 11 10 9 32 32 H 1.09001 * 109.46655 * 40.97041 * 11 10 9 33 33 H 0.96996 * 120.00346 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.47234 * 181.81945 * 20 10 9 35 35 H 1.08999 * 109.47021 * 301.81938 * 20 10 9 36 36 H 1.08997 * 109.46941 * 303.41842 * 21 20 10 37 37 H 1.09007 * 109.46674 * 63.41361 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1582 1.1468 0.0000 4 6 3.4757 1.1966 0.0005 5 6 4.2275 0.0338 0.0016 6 9 5.5772 0.0914 0.0026 7 6 3.5757 -1.1920 0.0076 8 6 2.1894 -1.2016 0.0005 9 6 1.4357 -2.5066 0.0005 10 7 0.9831 -2.8107 -1.3636 11 6 0.0485 -3.9441 -1.3677 12 6 -0.7416 -3.9389 -2.6510 13 1 -0.6213 -3.1296 -3.3560 14 6 -1.6180 -4.9674 -2.9251 15 7 -2.3072 -4.9631 -4.0452 16 14 -1.8255 -6.3675 -1.7062 17 1 -2.9083 -6.0323 -0.7468 18 1 -2.1788 -7.6114 -2.4365 19 1 -0.5544 -6.5721 -0.9662 20 6 2.1245 -3.0663 -2.2523 21 6 2.8993 -4.2860 -1.7494 22 6 4.0887 -4.4931 -2.5916 23 7 5.0055 -4.6534 -3.2420 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8899 -0.5142 26 1 -0.3633 -0.8901 -0.5135 27 1 3.9739 2.1548 0.0009 28 1 4.1350 -2.1158 0.0134 29 1 0.5721 -2.4274 0.6607 30 1 2.0901 -3.3042 0.3524 31 1 0.6077 -4.8764 -1.2890 32 1 -0.6327 -3.8564 -0.5213 33 1 -2.9235 -5.6868 -4.2383 34 1 1.7627 -3.2569 -3.2627 35 1 2.7812 -2.1963 -2.2596 36 1 3.2091 -4.1196 -0.7177 37 1 2.2607 -5.1680 -1.7994 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232990769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:05 Heat of formation + Delta-G solvation = 23.062946 kcal Electronic energy + Delta-G solvation = -21280.480376 eV Core-core repulsion = 17972.694565 eV Total energy + Delta-G solvation = -3307.785811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.01565 -40.46842 -38.04561 -36.17498 -33.29510 -32.69895 -32.43090 -30.60106 -28.35403 -27.15091 -25.86166 -23.75023 -22.69127 -21.66803 -19.93663 -17.90707 -17.36980 -17.24175 -16.75460 -16.02743 -15.95568 -15.41930 -14.94202 -14.54427 -14.25630 -13.96842 -13.79362 -13.67047 -13.34838 -13.03053 -12.64022 -12.51597 -12.29703 -12.12742 -12.11077 -11.86128 -11.69423 -11.49415 -11.35677 -10.83175 -10.69318 -10.30695 -10.14497 -9.77985 -9.62900 -9.45569 -8.69872 -8.67400 -7.69966 -6.15529 -4.14659 0.88176 1.03159 2.91753 2.94430 3.18459 3.23781 3.28539 3.52072 3.94683 4.10721 4.30034 4.31971 4.51544 4.64602 4.69634 4.82293 5.06666 5.13794 5.21501 5.27967 5.43063 5.54639 5.62956 5.71111 5.78754 5.81956 5.94114 5.97427 6.17720 6.36525 6.38637 6.61489 6.67601 6.68216 7.38488 7.55181 7.68489 7.75750 7.84028 8.49623 8.95589 9.44493 10.97377 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.005712 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.229270 B = 4900.795813 C = 6004.292035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.146 3.854 3 N -0.462 5.462 4 C 0.073 3.927 5 C 0.034 3.966 6 F -0.136 7.136 7 C -0.106 4.106 8 C -0.090 4.090 9 C 0.081 3.919 10 N -0.509 5.509 11 C 0.153 3.847 12 C -0.511 4.511 13 H 0.083 0.917 14 C 0.071 3.929 15 N -0.895 5.895 16 Si 0.870 3.130 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.267 1.267 20 C 0.068 3.932 21 C -0.076 4.076 22 C 0.219 3.781 23 N -0.450 5.450 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.162 0.838 28 H 0.142 0.858 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.003 0.997 32 H 0.028 0.972 33 H 0.265 0.735 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 6.759 11.595 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.008 3.992 3 N -0.170 5.170 4 C -0.086 4.086 5 C 0.012 3.988 6 F -0.114 7.114 7 C -0.133 4.133 8 C -0.093 4.093 9 C -0.047 4.047 10 N -0.231 5.231 11 C 0.028 3.972 12 C -0.550 4.550 13 H 0.101 0.899 14 C -0.131 4.131 15 N -0.534 5.534 16 Si 0.697 3.303 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.192 1.192 20 C -0.062 4.062 21 C -0.117 4.117 22 C -0.099 4.099 23 N -0.128 5.128 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.124 0.876 27 H 0.180 0.820 28 H 0.159 0.841 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.797 7.599 10.337 15.555 hybrid contribution 0.762 -2.263 1.110 2.634 sum 9.559 5.335 11.447 15.839 Atomic orbital electron populations 1.20897 0.87641 1.05600 1.02815 1.21321 0.97772 0.86995 0.93099 1.67626 1.08092 1.29455 1.11824 1.22804 0.89895 0.97303 0.98606 1.18754 0.77827 0.95736 1.06434 1.91504 1.28589 1.97223 1.94116 1.21577 0.94741 0.97350 0.99631 1.20637 0.92428 0.97268 0.98938 1.21189 0.98701 0.91405 0.93430 1.62269 1.13252 1.42331 1.05216 1.20406 0.90971 0.86672 0.99164 1.20958 1.22091 1.08841 1.03069 0.89888 1.24889 0.95480 0.97709 0.95029 1.69876 1.26624 1.33045 1.23839 0.86966 0.78983 0.82595 0.81776 1.20090 1.21252 1.19154 1.22128 0.91060 0.93276 0.99725 1.20239 0.89655 1.04850 0.96990 1.29120 0.94106 0.92817 0.93833 1.81154 1.12220 1.09377 1.10058 0.90806 0.90615 0.87589 0.82036 0.84062 0.88830 0.93656 0.97981 0.95372 0.92530 0.88190 0.91532 0.88256 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.43 36.01 0.34 -1.04 16 2 C 0.15 1.93 6.78 -82.59 -0.56 1.37 16 3 N -0.46 -6.25 10.27 -9.42 -0.10 -6.34 16 4 C 0.07 0.87 11.17 -17.46 -0.20 0.67 16 5 C 0.03 0.41 7.35 -39.28 -0.29 0.12 16 6 F -0.14 -1.67 17.28 2.25 0.04 -1.63 16 7 C -0.11 -1.24 8.87 -39.21 -0.35 -1.59 16 8 C -0.09 -1.11 4.57 -104.50 -0.48 -1.59 16 9 C 0.08 1.00 4.01 -4.97 -0.02 0.98 16 10 N -0.51 -8.04 3.97 -237.51 -0.94 -8.98 16 11 C 0.15 2.93 3.72 -4.97 -0.02 2.91 16 12 C -0.51 -12.56 9.16 -34.44 -0.32 -12.87 16 13 H 0.08 2.29 8.05 -52.49 -0.42 1.87 16 14 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 15 N -0.90 -25.51 13.96 55.43 0.77 -24.74 16 16 Si 0.87 19.13 27.56 -169.99 -4.69 14.45 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.27 -5.41 6.41 56.52 0.36 -5.05 16 20 C 0.07 1.02 4.94 -3.82 -0.02 1.00 16 21 C -0.08 -0.96 5.08 -29.52 -0.15 -1.11 16 22 C 0.22 3.23 15.43 -20.78 -0.32 2.91 16 23 N -0.45 -7.71 18.53 42.13 0.78 -6.93 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 26 H 0.11 1.46 6.33 -51.93 -0.33 1.14 16 27 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.14 1.41 7.78 -52.49 -0.41 1.00 16 29 H 0.09 1.10 6.98 -51.93 -0.36 0.74 16 30 H 0.05 0.48 5.88 -51.93 -0.31 0.18 16 31 H 0.00 0.05 4.54 -51.93 -0.24 -0.19 16 32 H 0.03 0.53 7.41 -51.93 -0.38 0.15 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.10 1.75 7.56 -51.93 -0.39 1.36 16 35 H 0.07 0.94 6.56 -51.93 -0.34 0.60 16 36 H 0.10 1.00 5.87 -51.93 -0.30 0.69 16 37 H 0.12 1.61 6.33 -51.92 -0.33 1.28 16 LS Contribution 314.12 15.07 4.73 4.73 Total: -1.00 -29.00 314.12 -6.12 -35.13 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.26 Total: 0.80 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.47 Total: -6.48 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.52 Total: -47.00 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.69 Total: 14.45 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.00 -6.12 -35.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232990769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.189 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds