Wall clock time and date at job start Mon Mar 30 2020 02:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38144 * 120.39122 * 2 1 4 4 N 1.31902 * 120.79884 * 179.97438 * 3 2 1 5 5 C 1.32057 * 121.68964 * 359.75149 * 4 3 2 6 6 F 1.35096 * 119.65110 * 180.26681 * 5 4 3 7 7 C 1.38514 * 120.69924 * 0.53704 * 5 4 3 8 8 C 1.50703 * 120.43144 * 179.72375 * 7 5 4 9 9 N 1.46902 * 109.47324 * 275.05455 * 8 7 5 10 10 C 1.46903 * 110.99732 * 200.48676 * 9 8 7 11 11 C 1.50696 * 109.46797 * 169.72947 * 10 9 8 12 12 H 1.08007 * 120.00088 * 4.72665 * 11 10 9 13 13 C 1.37876 * 119.99901 * 184.73771 * 11 10 9 14 14 N 1.31515 * 119.99906 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00106 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47671 * 59.99149 * 15 13 11 17 17 H 1.48500 * 109.47378 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46870 * 299.99215 * 15 13 11 19 19 C 1.46897 * 110.99960 * 76.52700 * 9 8 7 20 20 C 1.53006 * 109.46784 * 60.88382 * 19 9 8 21 21 C 1.47193 * 109.46810 * 175.37932 * 20 19 9 22 22 N 7.88560 * 164.71364 * 247.90816 * 2 1 3 23 23 C 1.38544 * 119.13864 * 359.45228 * 7 5 4 24 24 H 1.09007 * 109.46975 * 270.01956 * 1 2 3 25 25 H 1.08998 * 109.47448 * 30.01979 * 1 2 3 26 26 H 1.08997 * 109.47128 * 150.02566 * 1 2 3 27 27 H 1.07999 * 119.59646 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.46804 * 155.05149 * 8 7 5 29 29 H 1.09003 * 109.46661 * 35.05767 * 8 7 5 30 30 H 1.09004 * 109.46900 * 289.72558 * 10 9 8 31 31 H 1.09000 * 109.47351 * 49.72343 * 10 9 8 32 32 H 0.97001 * 119.99673 * 180.02562 * 14 13 11 33 33 H 1.08995 * 109.47082 * 180.87544 * 19 9 8 34 34 H 1.08994 * 109.47303 * 300.88557 * 19 9 8 35 35 H 1.09004 * 109.46674 * 295.37541 * 20 19 9 36 36 H 1.08998 * 109.47456 * 55.37690 * 20 19 9 37 37 H 1.08003 * 120.77533 * 180.24778 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1916 0.0000 4 7 3.5249 1.2010 0.0005 5 6 4.2265 0.0823 0.0059 6 9 5.5763 0.1400 0.0117 7 6 3.5934 -1.1496 0.0001 8 6 4.4001 -2.4225 0.0000 9 7 4.7710 -2.7672 -1.3790 10 6 5.1150 -4.1910 -1.4913 11 6 5.2430 -4.5635 -2.9459 12 1 5.1602 -3.8023 -3.7076 13 6 5.4655 -5.8761 -3.3043 14 7 5.5666 -6.8030 -2.3768 15 14 5.6249 -6.3378 -5.1074 16 1 6.7676 -5.6034 -5.7074 17 1 5.8597 -7.7994 -5.2252 18 1 4.3744 -5.9777 -5.8229 19 6 5.8726 -1.9201 -1.8553 20 6 7.1007 -2.1341 -0.9681 21 6 8.2364 -1.3707 -1.5102 22 7 9.1136 -0.7819 -1.9264 23 6 2.2087 -1.1965 0.0001 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6657 2.1268 -0.0004 28 1 3.8058 -3.2293 0.4290 29 1 5.3028 -2.2806 0.5944 30 1 6.0616 -4.3772 -0.9839 31 1 4.3312 -4.7917 -1.0299 32 1 5.7235 -7.7264 -2.6290 33 1 6.1167 -2.1859 -2.8837 34 1 5.5710 -0.8736 -1.8120 35 1 6.8823 -1.7915 0.0434 36 1 7.3528 -3.1943 -0.9461 37 1 1.6878 -2.1426 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235336507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:25 Heat of formation + Delta-G solvation = 4.744314 kcal Electronic energy + Delta-G solvation = -21289.107605 eV Core-core repulsion = 17980.527438 eV Total energy + Delta-G solvation = -3308.580167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.05278 -41.16994 -39.29330 -37.41475 -34.85857 -34.42341 -33.64163 -31.64622 -29.12416 -27.85110 -26.88467 -25.51625 -24.21734 -22.62924 -21.14642 -19.16202 -18.87227 -18.32440 -18.27886 -17.42318 -16.71713 -16.22022 -15.94833 -15.49402 -15.41536 -15.27757 -14.80493 -14.67819 -14.63002 -14.27327 -13.96403 -13.60654 -13.52862 -13.24449 -13.21102 -12.99685 -12.91558 -12.88886 -12.60672 -12.52030 -12.29950 -11.88442 -11.60136 -11.30135 -10.68114 -10.58409 -10.50929 -9.61878 -8.99850 -8.13823 -6.19752 -0.03766 0.21961 1.45297 1.46202 1.53099 1.70845 1.75541 2.43806 2.58125 2.69707 2.97085 3.20950 3.43975 3.59638 3.80850 3.87290 4.02046 4.09188 4.15748 4.33826 4.42512 4.46837 4.65938 4.80020 4.87376 4.92377 4.95557 5.09184 5.16432 5.30289 5.34712 5.36981 5.38838 5.71112 5.75107 6.10377 6.28867 6.53411 6.61664 6.70409 6.94110 7.48493 8.95760 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.015102 B = 0.005724 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.673655 B = 4890.651527 C = 6201.464056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.137 4.137 3 C 0.119 3.881 4 N -0.538 5.538 5 C 0.275 3.725 6 F -0.123 7.123 7 C -0.135 4.135 8 C 0.084 3.916 9 N -0.526 5.526 10 C 0.201 3.799 11 C -0.518 4.518 12 H 0.057 0.943 13 C 0.014 3.986 14 N -0.926 5.926 15 Si 0.949 3.051 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.271 1.271 19 C 0.073 3.927 20 C -0.061 4.061 21 C 0.244 3.756 22 N -0.491 5.491 23 C -0.041 4.041 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.194 0.806 28 H 0.097 0.903 29 H 0.060 0.940 30 H -0.007 1.007 31 H 0.021 0.979 32 H 0.263 0.737 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.447 11.184 8.265 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.139 4.139 3 C -0.038 4.038 4 N -0.252 5.252 5 C 0.122 3.878 6 F -0.102 7.102 7 C -0.139 4.139 8 C -0.044 4.044 9 N -0.248 5.248 10 C 0.076 3.924 11 C -0.557 4.557 12 H 0.075 0.925 13 C -0.185 4.185 14 N -0.567 5.567 15 Si 0.775 3.225 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.057 4.057 20 C -0.103 4.103 21 C -0.073 4.073 22 N -0.170 5.170 23 C -0.067 4.067 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.211 0.789 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.011 0.989 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.012 12.722 7.359 17.784 hybrid contribution 0.777 -1.678 -0.359 1.883 sum -9.235 11.045 7.001 16.009 Atomic orbital electron populations 1.20787 0.86978 1.04483 1.03955 1.21312 0.99766 0.92816 0.99969 1.22946 0.86656 0.99737 0.94424 1.66978 1.11257 1.30628 1.16327 1.18152 0.78353 0.90244 1.01064 1.91539 1.28294 1.96944 1.93461 1.20623 0.96076 0.93901 1.03286 1.21095 0.98644 0.93978 0.90645 1.62292 1.36849 1.05880 1.19768 1.19579 0.94469 0.82504 0.95897 1.21406 1.47857 0.93030 0.93362 0.92471 1.25599 0.95429 0.96618 1.00871 1.70013 1.50804 1.01673 1.34165 0.85745 0.78653 0.76873 0.81180 1.20243 1.21124 1.19662 1.22025 0.87421 0.97546 0.98739 1.20162 0.88619 0.99747 1.01757 1.29301 0.93584 0.92303 0.92118 1.81112 1.12868 1.12038 1.10952 1.21647 0.91580 1.00189 0.93316 0.89167 0.89441 0.90566 0.78943 0.88513 0.92174 0.98901 0.96136 0.92844 0.91232 0.91027 0.85730 0.86727 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.04 71.24 0.71 -0.32 16 2 C -0.14 -2.39 5.90 -19.77 -0.12 -2.50 16 3 C 0.12 2.34 10.86 84.66 0.92 3.26 16 4 N -0.54 -14.80 10.37 -196.93 -2.04 -16.85 16 5 C 0.27 7.97 7.45 84.72 0.63 8.60 16 6 F -0.12 -3.78 12.91 44.97 0.58 -3.19 16 7 C -0.13 -3.59 5.27 -19.72 -0.10 -3.69 16 8 C 0.08 2.43 4.89 85.56 0.42 2.85 16 9 N -0.53 -19.08 4.61 -905.35 -4.18 -23.26 16 10 C 0.20 8.98 4.52 85.56 0.39 9.37 16 11 C -0.52 -26.51 8.57 25.60 0.22 -26.29 16 12 H 0.06 2.94 6.96 -2.91 -0.02 2.92 16 13 C 0.01 0.72 5.46 84.65 0.46 1.18 16 14 N -0.93 -51.35 13.29 21.45 0.28 -51.07 16 15 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 C 0.07 2.53 4.56 86.31 0.39 2.93 16 20 C -0.06 -1.91 4.60 28.79 0.13 -1.78 16 21 C 0.24 8.42 15.43 89.45 1.38 9.80 16 22 N -0.49 -18.94 18.53 20.00 0.37 -18.57 16 23 C -0.04 -0.89 9.52 22.46 0.21 -0.68 16 24 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.09 0.60 8.09 -2.39 -0.02 0.58 16 26 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 27 H 0.19 2.34 8.06 -2.91 -0.02 2.31 16 28 H 0.10 2.63 7.63 -2.39 -0.02 2.61 16 29 H 0.06 1.61 5.42 -2.39 -0.01 1.59 16 30 H -0.01 -0.30 6.00 -2.38 -0.01 -0.31 16 31 H 0.02 0.99 7.82 -2.39 -0.02 0.97 16 32 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 33 H 0.07 2.73 6.71 -2.39 -0.02 2.72 16 34 H 0.07 2.42 5.32 -2.39 -0.01 2.40 16 35 H 0.13 3.31 5.24 -2.38 -0.01 3.30 16 36 H 0.11 3.81 6.13 -2.39 -0.01 3.79 16 37 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -63.78 313.61 3.80 -59.98 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.11 Total: 5.67 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.65 Total: 2.74 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -5.56 Total: -109.74 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.58 Total: -3.19 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -63.78 3.80 -59.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235336507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.721 kcal (2) G-P(sol) polarization free energy of solvation -63.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds