Wall clock time and date at job start Mon Mar 30 2020 01:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47216 * 2 1 4 4 C 1.46902 * 110.99863 * 297.51717 * 3 2 1 5 5 C 1.50697 * 109.46984 * 160.10666 * 4 3 2 6 6 H 1.08000 * 120.00055 * 4.11789 * 5 4 3 7 7 C 1.37881 * 120.00111 * 184.11804 * 5 4 3 8 8 N 1.31515 * 119.99844 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00163 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47353 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47194 * 119.99800 * 9 7 5 12 12 H 1.48497 * 109.47217 * 239.99954 * 9 7 5 13 13 C 1.46898 * 111.00438 * 173.56133 * 3 2 1 14 14 C 1.50698 * 109.46974 * 293.95783 * 13 3 2 15 15 C 1.37855 * 119.99433 * 259.99374 * 14 13 3 16 16 C 1.38702 * 120.71538 * 179.72105 * 15 14 13 17 17 C 1.37991 * 120.24114 * 0.28517 * 16 15 14 18 18 F 1.35101 * 120.22248 * 179.97438 * 17 16 15 19 19 C 1.39570 * 119.55772 * 359.97060 * 17 16 15 20 20 C 1.46795 * 134.34114 * 179.97438 * 19 17 16 21 21 C 1.33971 * 106.18170 * 180.02562 * 20 19 17 22 22 O 1.34480 * 110.15030 * 0.02562 * 21 20 19 23 23 C 1.34833 * 110.89255 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46996 * 307.32704 * 1 2 3 25 25 H 1.08998 * 109.46835 * 67.33172 * 1 2 3 26 26 H 1.09005 * 109.46500 * 187.33184 * 1 2 3 27 27 H 1.08997 * 109.47424 * 239.99834 * 2 1 3 28 28 H 1.09003 * 109.47089 * 119.99836 * 2 1 3 29 29 H 1.08998 * 109.47379 * 280.10692 * 4 3 2 30 30 H 1.09007 * 109.47017 * 40.11128 * 4 3 2 31 31 H 0.97003 * 120.00099 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47315 * 173.95482 * 13 3 2 33 33 H 1.09000 * 109.47020 * 53.95312 * 13 3 2 34 34 H 1.08003 * 119.64476 * 0.02562 * 15 14 13 35 35 H 1.08000 * 119.88506 * 180.25947 * 16 15 14 36 36 H 1.08001 * 126.90901 * 0.02562 * 20 19 17 37 37 H 1.08000 * 124.92997 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5978 2.0925 -1.2163 5 6 1.6736 3.5796 -0.9842 6 1 2.0650 3.9615 -0.0529 7 6 1.2433 4.4526 -1.9608 8 7 0.7671 3.9875 -3.0951 9 14 1.3379 6.2959 -1.6735 10 1 1.9080 6.5585 -0.3276 11 1 2.2052 6.9143 -2.7082 12 1 -0.0247 6.8803 -1.7559 13 6 3.4800 1.4272 0.1538 14 6 3.8562 0.9138 1.5198 15 6 4.1518 1.8015 2.5322 16 6 4.4943 1.3455 3.7966 17 6 4.5492 -0.0087 4.0558 18 9 4.8833 -0.4524 5.2873 19 6 4.2572 -0.9170 3.0371 20 6 4.2155 -2.3818 2.9494 21 6 3.8647 -2.6705 1.6891 22 8 3.6853 -1.5376 0.9871 23 6 3.9103 -0.4540 1.7572 24 1 -0.3633 0.6231 0.8172 25 1 -0.3633 0.3961 -0.9483 26 1 -0.3632 -1.0193 0.1312 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.2551 1.8197 -2.0419 30 1 0.5725 1.8148 -1.4610 31 1 0.4646 4.6017 -3.7823 32 1 3.8275 2.4544 0.0432 33 1 3.9439 0.8025 -0.6095 34 1 4.1115 2.8635 2.3402 35 1 4.7192 2.0529 4.5811 36 1 4.4255 -3.0852 3.7416 37 1 3.7435 -3.6683 1.2941 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236906285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:41 Heat of formation + Delta-G solvation = -10.238739 kcal Electronic energy + Delta-G solvation = -21459.305172 eV Core-core repulsion = 18117.782541 eV Total energy + Delta-G solvation = -3341.522632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.85823 -42.48538 -38.13727 -36.59805 -33.00379 -32.47946 -31.08930 -29.82828 -29.10532 -26.88938 -24.65245 -23.04241 -22.62117 -22.36974 -20.85749 -19.45525 -18.00214 -17.39875 -16.67515 -16.24839 -16.15021 -15.35076 -15.19146 -14.89612 -14.68688 -14.11594 -13.74738 -13.55959 -13.27396 -12.98686 -12.66508 -12.49560 -12.03095 -11.70122 -11.65038 -11.45410 -11.21739 -10.94144 -10.80218 -10.74443 -10.53486 -10.24100 -10.04910 -9.64709 -9.21350 -8.64432 -8.40946 -7.97641 -7.24620 -6.01520 -4.02496 0.83870 1.28558 2.30458 2.78927 3.31267 3.39020 3.43046 3.57766 4.17346 4.35493 4.43521 4.76035 4.84910 5.00352 5.12634 5.25453 5.34585 5.38757 5.54552 5.75425 5.79732 5.94008 5.99568 6.03054 6.14730 6.21957 6.24890 6.40576 6.43151 6.57927 6.64845 6.72842 6.84966 7.13874 7.24801 7.35705 7.82618 8.11880 8.19822 8.54804 9.04981 9.61429 11.09110 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.005031 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.315308 B = 5564.446568 C = 6439.207723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 N -0.528 5.528 4 C 0.187 3.813 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.099 3.901 14 C -0.055 4.055 15 C -0.055 4.055 16 C -0.164 4.164 17 C 0.128 3.872 18 F -0.140 7.140 19 C -0.171 4.171 20 C -0.206 4.206 21 C 0.007 3.993 22 O -0.184 6.184 23 C 0.089 3.911 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.020 0.980 28 H 0.062 0.938 29 H -0.011 1.011 30 H 0.042 0.958 31 H 0.260 0.740 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.157 0.843 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.077 -11.230 11.038 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 N -0.253 5.253 4 C 0.063 3.937 5 C -0.542 4.542 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.029 4.029 14 C -0.056 4.056 15 C -0.074 4.074 16 C -0.183 4.183 17 C 0.109 3.891 18 F -0.118 7.118 19 C -0.173 4.173 20 C -0.225 4.225 21 C -0.058 4.058 22 O -0.085 6.085 23 C 0.041 3.959 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.007 0.993 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.052 0.948 34 H 0.167 0.833 35 H 0.158 0.842 36 H 0.174 0.826 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.716 -10.923 11.017 16.905 hybrid contribution 0.403 0.290 -0.225 0.545 sum 7.119 -10.633 10.791 16.739 Atomic orbital electron populations 1.21786 0.95551 0.99958 1.02928 1.22125 0.95704 0.90801 0.99302 1.62278 1.07985 1.12398 1.42676 1.19859 0.96242 0.93493 0.84145 1.21203 1.41065 0.90454 1.01433 0.91837 1.24986 0.95491 0.99032 0.95145 1.69966 1.43047 1.34671 1.06249 0.86472 0.77648 0.85319 0.78149 1.19643 1.21188 1.21097 1.20953 0.90549 1.01709 0.89702 1.19135 1.00795 0.86977 0.98731 1.20754 0.96171 1.00215 0.90218 1.21012 1.05347 0.93019 0.98912 1.16934 1.01643 0.91527 0.79019 1.91460 1.89942 1.90202 1.40216 1.19804 1.09027 0.94000 0.94465 1.22353 1.09137 0.92825 0.98164 1.23958 1.00878 0.89811 0.91182 1.84198 1.72508 1.12799 1.38969 1.19166 1.00404 0.88296 0.88017 0.92113 0.92083 0.93763 0.96162 0.92027 0.99304 0.94052 0.93028 0.88496 0.94844 0.83328 0.84214 0.82567 0.77591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.61 37.16 0.36 -2.26 16 2 C 0.05 0.93 4.80 -3.82 -0.02 0.92 16 3 N -0.53 -11.37 4.44 -237.52 -1.06 -12.42 16 4 C 0.19 4.79 4.62 -4.98 -0.02 4.77 16 5 C -0.50 -13.77 8.61 -34.44 -0.30 -14.07 16 6 H 0.06 1.71 7.69 -52.49 -0.40 1.31 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 9 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.10 1.88 5.00 -4.98 -0.02 1.86 16 14 C -0.06 -0.91 5.17 -104.51 -0.54 -1.45 16 15 C -0.05 -0.79 9.63 -39.55 -0.38 -1.17 16 16 C -0.16 -2.16 10.02 -39.50 -0.40 -2.56 16 17 C 0.13 1.83 7.34 -39.18 -0.29 1.55 16 18 F -0.14 -1.94 17.28 2.25 0.04 -1.90 16 19 C -0.17 -2.53 6.38 -105.10 -0.67 -3.20 16 20 C -0.21 -2.45 11.14 -37.62 -0.42 -2.87 16 21 C 0.01 0.07 11.96 29.23 0.35 0.42 16 22 O -0.18 -2.73 8.56 3.76 0.03 -2.69 16 23 C 0.09 1.42 5.51 -38.49 -0.21 1.21 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.06 1.19 6.46 -51.93 -0.34 0.86 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 1.12 4.43 -51.93 -0.23 0.89 16 29 H -0.01 -0.30 8.00 -51.93 -0.42 -0.71 16 30 H 0.04 1.13 5.80 -51.93 -0.30 0.83 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.10 1.89 7.20 -51.93 -0.37 1.52 16 33 H 0.03 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.15 1.95 8.02 -52.48 -0.42 1.53 16 35 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.21 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -30.73 312.30 -7.79 -38.53 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.57 Total: -1.37 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.66 Total: -15.44 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.32 Total: -38.09 kcal Atomic # 8 Polarization: -2.73 SS G_CDS: 0.03 Total: -2.69 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.73 -7.79 -38.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236906285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.289 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds