Wall clock time and date at job start Mon Mar 30 2020 01:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36820 * 125.04153 * 2 1 4 4 C 1.34224 * 109.94604 * 179.97438 * 3 2 1 5 5 C 1.46530 * 106.97567 * 0.02562 * 4 3 2 6 6 C 1.39478 * 133.96882 * 180.02562 * 5 4 3 7 7 C 1.38771 * 119.40725 * 179.97438 * 6 5 4 8 8 C 1.48408 * 119.94153 * 180.02562 * 7 6 5 9 9 C 1.39737 * 120.00024 * 359.97307 * 8 7 6 10 10 C 1.38387 * 120.38006 * 180.02562 * 9 8 7 11 11 C 1.37724 * 120.37876 * 0.02562 * 10 9 8 12 12 C 1.40762 * 119.98633 * 359.74796 * 11 10 9 13 13 C 1.41423 * 120.18252 * 180.27903 * 12 11 10 14 14 H 1.08004 * 119.99854 * 329.89121 * 13 12 11 15 15 C 1.39925 * 120.00010 * 149.90358 * 13 12 11 16 16 N 1.30832 * 120.00208 * 162.15162 * 15 13 12 17 17 Si 1.86801 * 119.99943 * 342.14505 * 15 13 12 18 18 H 1.48502 * 109.47120 * 95.43900 * 17 15 13 19 19 H 1.48499 * 109.47084 * 215.43873 * 17 15 13 20 20 H 1.48496 * 109.46966 * 335.44140 * 17 15 13 21 21 C 1.38731 * 120.00137 * 179.97438 * 8 7 6 22 22 C 1.39884 * 120.11622 * 0.26646 * 7 6 5 23 23 C 1.36483 * 120.69248 * 359.44478 * 22 7 6 24 24 C 1.37694 * 125.04158 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47136 * 90.02764 * 1 2 3 26 26 H 1.09003 * 109.46811 * 210.02501 * 1 2 3 27 27 H 1.08997 * 109.47054 * 330.02193 * 1 2 3 28 28 H 1.07990 * 125.03082 * 359.97438 * 3 2 1 29 29 H 1.07999 * 126.51206 * 179.97438 * 4 3 2 30 30 H 1.07992 * 120.30112 * 359.94780 * 6 5 4 31 31 H 1.07998 * 119.81001 * 0.02562 * 9 8 7 32 32 H 1.08002 * 119.81090 * 180.02562 * 10 9 8 33 33 H 1.07999 * 120.00758 * 180.02562 * 11 10 9 34 34 H 0.97002 * 120.00314 * 180.02562 * 16 15 13 35 35 H 1.07997 * 120.18500 * 359.95813 * 21 8 7 36 36 H 1.07998 * 119.65012 * 179.70658 * 22 7 6 37 37 H 1.08001 * 119.89545 * 180.29576 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.1202 0.0000 4 6 3.5465 0.7706 0.0006 5 6 3.5946 -0.6939 0.0003 6 6 4.6297 -1.6288 0.0011 7 6 4.3251 -2.9826 0.0011 8 6 5.4171 -3.9876 0.0025 9 6 6.7507 -3.5703 0.0033 10 6 7.7752 -4.5006 0.0041 11 6 7.4920 -5.8484 0.0036 12 6 6.1542 -6.2863 0.0076 13 6 5.8587 -7.6693 0.0131 14 1 6.5363 -8.3681 -0.4549 15 6 4.6884 -8.1322 0.6246 16 7 4.2310 -9.3252 0.3429 17 14 3.7792 -7.0471 1.8433 18 1 2.6914 -6.3189 1.1421 19 1 3.1975 -7.8900 2.9186 20 1 4.7259 -6.0697 2.4379 21 6 5.1139 -5.3414 0.0031 22 6 2.9905 -3.4018 -0.0053 23 6 1.9742 -2.4908 -0.0002 24 6 2.2556 -1.1274 0.0005 25 1 -0.3633 -0.0005 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 1.8825 2.1354 -0.0004 29 1 4.3930 1.4414 0.0003 30 1 5.6590 -1.3020 0.0013 31 1 6.9832 -2.5156 0.0032 32 1 8.8026 -4.1678 0.0050 33 1 8.2962 -6.5693 0.0046 34 1 3.4195 -9.6460 0.7666 35 1 4.0843 -5.6673 0.0031 36 1 2.7620 -4.4573 -0.0101 37 1 0.9484 -2.8287 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239940803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:24 Heat of formation + Delta-G solvation = 78.194655 kcal Electronic energy + Delta-G solvation = -20004.976644 eV Core-core repulsion = 17098.057996 eV Total energy + Delta-G solvation = -2906.918647 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10488 -38.27164 -36.40007 -33.58334 -32.83510 -31.41913 -30.34946 -29.21971 -27.83407 -26.01196 -25.14592 -22.59299 -22.29823 -20.66513 -20.07875 -19.53714 -17.34091 -17.07482 -16.16538 -15.89012 -15.32160 -14.64702 -14.52174 -14.01038 -13.73023 -13.32638 -13.26533 -13.02622 -12.94222 -12.61940 -12.42739 -12.31221 -12.05876 -11.70347 -11.35113 -11.12143 -10.79491 -10.62146 -10.56273 -10.21156 -9.69908 -9.60816 -9.47134 -9.11767 -8.38434 -7.65008 -7.59615 -6.92286 -6.87833 -4.45709 1.35870 1.60312 2.69764 2.79803 2.85902 2.88266 3.11663 3.24382 3.35887 4.00858 4.22377 4.62351 4.66214 4.78492 4.91026 5.00452 5.17965 5.29012 5.39538 5.48984 5.60803 5.71654 5.79576 6.01946 6.04344 6.10059 6.27817 6.37290 6.55658 6.66996 6.74247 6.81742 6.95058 6.98566 7.05185 7.27482 7.36931 7.39237 7.47105 7.66070 7.79192 7.92025 8.14072 8.38736 8.68019 8.84035 10.12171 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.005258 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.172448 B = 5324.075562 C = 6400.068267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.493 5.493 3 C 0.040 3.960 4 C -0.202 4.202 5 C -0.108 4.108 6 C -0.069 4.069 7 C -0.048 4.048 8 C -0.014 4.014 9 C -0.226 4.226 10 C -0.087 4.087 11 C -0.204 4.204 12 C 0.092 3.908 13 C -0.452 4.452 14 H 0.091 0.909 15 C 0.086 3.914 16 N -0.812 5.812 17 Si 0.902 3.098 18 H -0.268 1.268 19 H -0.291 1.291 20 H -0.242 1.242 21 C -0.220 4.220 22 C -0.089 4.089 23 C -0.132 4.132 24 C 0.087 3.913 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.163 0.837 29 H 0.144 0.856 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.284 0.716 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 16.939 0.636 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.177 5.177 3 C -0.085 4.085 4 C -0.228 4.228 5 C -0.112 4.112 6 C -0.088 4.088 7 C -0.049 4.049 8 C -0.014 4.014 9 C -0.245 4.245 10 C -0.105 4.105 11 C -0.224 4.224 12 C 0.089 3.911 13 C -0.481 4.481 14 H 0.109 0.891 15 C -0.132 4.132 16 N -0.437 5.437 17 Si 0.729 3.271 18 H -0.195 1.195 19 H -0.218 1.218 20 H -0.165 1.165 21 C -0.239 4.239 22 C -0.108 4.108 23 C -0.152 4.152 24 C -0.018 4.018 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.181 0.819 29 H 0.162 0.838 30 H 0.144 0.856 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.788 16.714 0.648 18.450 hybrid contribution -0.670 0.300 0.498 0.887 sum -8.458 17.013 1.146 19.035 Atomic orbital electron populations 1.21866 0.77722 1.03841 1.02656 1.43748 1.05536 1.04422 1.64010 1.21667 0.90575 0.90792 1.05451 1.21654 0.95802 0.92968 1.12364 1.19136 0.92056 0.93308 1.06743 1.20634 0.97927 0.91002 0.99224 1.18835 0.92815 0.92575 1.00693 1.18343 0.91595 0.91850 0.99627 1.20457 0.91747 0.97505 1.14819 1.20584 0.96992 0.93551 0.99354 1.21105 0.95983 0.94343 1.10948 1.17667 0.91167 0.93260 0.89022 1.19462 1.04915 0.91836 1.31858 0.89140 1.26096 0.95674 0.95241 0.96225 1.69699 1.19690 1.18425 1.35876 0.86464 0.80262 0.80189 0.80172 1.19477 1.21810 1.16536 1.21125 0.98103 0.91838 1.12806 1.20869 0.91762 0.99566 0.98634 1.19602 0.99232 0.89055 1.07349 1.18280 0.90126 0.88060 1.05330 0.91610 0.90302 0.90272 0.81934 0.83841 0.85566 0.88414 0.88602 0.88167 0.90581 0.87873 0.85337 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 11.02 59.85 0.66 1.32 16 2 N -0.49 -6.15 3.18 -121.76 -0.39 -6.54 16 3 C 0.04 0.45 11.28 -16.74 -0.19 0.26 16 4 C -0.20 -2.68 11.08 -37.66 -0.42 -3.09 16 5 C -0.11 -1.79 6.37 -105.15 -0.67 -2.46 16 6 C -0.07 -1.25 9.48 -38.92 -0.37 -1.62 16 7 C -0.05 -0.97 5.87 -104.90 -0.62 -1.59 16 8 C -0.01 -0.32 5.87 -104.97 -0.62 -0.93 16 9 C -0.23 -4.80 9.43 -38.97 -0.37 -5.16 16 10 C -0.09 -1.84 10.01 -39.71 -0.40 -2.24 16 11 C -0.20 -4.81 9.79 -38.82 -0.38 -5.19 16 12 C 0.09 2.36 5.09 -106.87 -0.54 1.82 16 13 C -0.45 -12.39 9.57 -37.74 -0.36 -12.75 16 14 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 15 C 0.09 2.28 5.41 -17.35 -0.09 2.19 16 16 N -0.81 -21.91 13.93 55.55 0.77 -21.14 16 17 Si 0.90 21.12 24.52 -169.99 -4.17 16.95 16 18 H -0.27 -5.95 6.03 56.52 0.34 -5.61 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.24 -5.89 6.85 56.52 0.39 -5.50 16 21 C -0.22 -5.41 6.53 -38.53 -0.25 -5.66 16 22 C -0.09 -1.71 9.34 -39.60 -0.37 -2.08 16 23 C -0.13 -2.17 9.87 -39.85 -0.39 -2.56 16 24 C 0.09 1.38 6.81 -83.92 -0.57 0.81 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 28 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.13 2.08 6.18 -52.49 -0.32 1.75 16 31 H 0.10 1.81 6.17 -52.49 -0.32 1.48 16 32 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 34 H 0.28 6.94 8.30 -40.82 -0.34 6.61 16 35 H 0.10 2.52 2.94 -52.49 -0.15 2.36 16 36 H 0.13 2.54 5.46 -52.49 -0.29 2.25 16 37 H 0.11 1.57 8.05 -52.49 -0.42 1.14 16 LS Contribution 306.16 15.07 4.61 4.61 Total: -1.00 -30.10 306.16 -9.21 -39.31 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.10 Total: 5.74 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: -5.95 Total: -38.94 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.39 Total: -27.68 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.17 Total: 16.95 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.10 -9.21 -39.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239940803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.509 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds