Wall clock time and date at job start Mon Mar 30 2020 01:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36820 * 125.04153 * 2 1 4 4 C 1.34224 * 109.94604 * 179.97438 * 3 2 1 5 5 C 1.46530 * 106.97567 * 0.02562 * 4 3 2 6 6 C 1.39478 * 133.96882 * 180.02562 * 5 4 3 7 7 C 1.38771 * 119.40725 * 179.97438 * 6 5 4 8 8 C 1.48408 * 119.94153 * 180.02562 * 7 6 5 9 9 C 1.39737 * 120.00024 * 359.97307 * 8 7 6 10 10 C 1.38387 * 120.38006 * 180.02562 * 9 8 7 11 11 C 1.37724 * 120.37876 * 0.02562 * 10 9 8 12 12 C 1.40762 * 119.98633 * 359.74796 * 11 10 9 13 13 C 1.41423 * 120.18252 * 180.27903 * 12 11 10 14 14 H 1.08004 * 119.99854 * 329.89121 * 13 12 11 15 15 C 1.39925 * 120.00010 * 149.90358 * 13 12 11 16 16 N 1.30832 * 120.00208 * 162.15162 * 15 13 12 17 17 Si 1.86801 * 119.99943 * 342.14505 * 15 13 12 18 18 H 1.48502 * 109.47120 * 95.43900 * 17 15 13 19 19 H 1.48499 * 109.47084 * 215.43873 * 17 15 13 20 20 H 1.48496 * 109.46966 * 335.44140 * 17 15 13 21 21 C 1.38731 * 120.00137 * 179.97438 * 8 7 6 22 22 C 1.39884 * 120.11622 * 0.26646 * 7 6 5 23 23 C 1.36483 * 120.69248 * 359.44478 * 22 7 6 24 24 C 1.37694 * 125.04158 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47136 * 90.02764 * 1 2 3 26 26 H 1.09003 * 109.46811 * 210.02501 * 1 2 3 27 27 H 1.08997 * 109.47054 * 330.02193 * 1 2 3 28 28 H 1.07990 * 125.03082 * 359.97438 * 3 2 1 29 29 H 1.07999 * 126.51206 * 179.97438 * 4 3 2 30 30 H 1.07992 * 120.30112 * 359.94780 * 6 5 4 31 31 H 1.07998 * 119.81001 * 0.02562 * 9 8 7 32 32 H 1.08002 * 119.81090 * 180.02562 * 10 9 8 33 33 H 1.07999 * 120.00758 * 180.02562 * 11 10 9 34 34 H 0.97002 * 120.00314 * 180.02562 * 16 15 13 35 35 H 1.07997 * 120.18500 * 359.95813 * 21 8 7 36 36 H 1.07998 * 119.65012 * 179.70658 * 22 7 6 37 37 H 1.08001 * 119.89545 * 180.29576 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.1202 0.0000 4 6 3.5465 0.7706 0.0006 5 6 3.5946 -0.6939 0.0003 6 6 4.6297 -1.6288 0.0011 7 6 4.3251 -2.9826 0.0011 8 6 5.4171 -3.9876 0.0025 9 6 6.7507 -3.5703 0.0033 10 6 7.7752 -4.5006 0.0041 11 6 7.4920 -5.8484 0.0036 12 6 6.1542 -6.2863 0.0076 13 6 5.8587 -7.6693 0.0131 14 1 6.5363 -8.3681 -0.4549 15 6 4.6884 -8.1322 0.6246 16 7 4.2310 -9.3252 0.3429 17 14 3.7792 -7.0471 1.8433 18 1 2.6914 -6.3189 1.1421 19 1 3.1975 -7.8900 2.9186 20 1 4.7259 -6.0697 2.4379 21 6 5.1139 -5.3414 0.0031 22 6 2.9905 -3.4018 -0.0053 23 6 1.9742 -2.4908 -0.0002 24 6 2.2556 -1.1274 0.0005 25 1 -0.3633 -0.0005 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 1.8825 2.1354 -0.0004 29 1 4.3930 1.4414 0.0003 30 1 5.6590 -1.3020 0.0013 31 1 6.9832 -2.5156 0.0032 32 1 8.8026 -4.1678 0.0050 33 1 8.2962 -6.5693 0.0046 34 1 3.4195 -9.6460 0.7666 35 1 4.0843 -5.6673 0.0031 36 1 2.7620 -4.4573 -0.0101 37 1 0.9484 -2.8287 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239940803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:24 Heat of formation + Delta-G solvation = 63.000866 kcal Electronic energy + Delta-G solvation = -20005.635496 eV Core-core repulsion = 17098.057996 eV Total energy + Delta-G solvation = -2907.577499 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.18957 -39.91924 -37.81603 -35.51021 -33.82799 -32.98864 -32.13538 -30.47407 -29.15374 -27.11234 -26.90943 -23.97515 -23.80150 -22.24841 -21.15396 -21.08293 -19.24537 -18.26807 -17.49601 -17.37922 -16.43034 -16.20054 -16.03527 -15.54861 -15.02594 -14.91942 -14.81821 -14.22117 -14.16986 -14.04201 -13.79372 -13.50265 -13.36191 -13.10204 -12.81265 -12.70634 -12.65968 -12.25147 -12.03581 -11.90096 -11.50557 -11.39721 -11.00863 -10.66491 -9.85213 -9.47097 -8.91053 -8.83474 -8.30612 -6.50954 -0.00109 0.26952 0.84466 1.14269 1.21828 1.42516 1.44974 1.84550 1.95871 2.09612 2.56829 3.00328 3.59251 3.69076 3.84649 3.94497 4.01667 4.14665 4.33881 4.39205 4.46510 4.54989 4.61073 4.71151 4.72129 4.72410 4.80289 4.97103 5.03659 5.10303 5.15782 5.27701 5.39915 5.59230 5.61708 5.77362 5.81924 5.86811 5.91370 6.11249 6.25360 6.26050 6.42558 6.47214 6.74104 6.84756 8.18528 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021782 B = 0.005258 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.172448 B = 5324.075562 C = 6400.068267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.491 5.491 3 C 0.063 3.937 4 C -0.225 4.225 5 C -0.128 4.128 6 C -0.068 4.068 7 C -0.083 4.083 8 C -0.018 4.018 9 C -0.216 4.216 10 C -0.081 4.081 11 C -0.222 4.222 12 C 0.071 3.929 13 C -0.489 4.489 14 H 0.059 0.941 15 C 0.054 3.946 16 N -0.852 5.852 17 Si 0.952 3.048 18 H -0.255 1.255 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.237 4.237 22 C -0.116 4.116 23 C -0.125 4.125 24 C 0.075 3.925 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.213 0.787 29 H 0.165 0.835 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.105 0.895 34 H 0.292 0.708 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.693 22.006 1.125 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.174 5.174 3 C -0.062 4.062 4 C -0.249 4.249 5 C -0.133 4.133 6 C -0.086 4.086 7 C -0.084 4.084 8 C -0.018 4.018 9 C -0.235 4.235 10 C -0.099 4.099 11 C -0.241 4.241 12 C 0.068 3.932 13 C -0.519 4.519 14 H 0.077 0.923 15 C -0.160 4.160 16 N -0.479 5.479 17 Si 0.776 3.224 18 H -0.180 1.180 19 H -0.201 1.201 20 H -0.184 1.184 21 C -0.256 4.256 22 C -0.135 4.135 23 C -0.145 4.145 24 C -0.032 4.032 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.130 0.870 28 H 0.229 0.771 29 H 0.183 0.817 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.237 21.790 1.130 23.694 hybrid contribution -0.246 -0.890 0.274 0.963 sum -9.483 20.900 1.404 22.993 Atomic orbital electron populations 1.22226 0.74996 1.05619 1.04092 1.44153 1.07286 1.03587 1.62344 1.22470 0.89811 0.92240 1.01660 1.21988 0.97758 0.91317 1.13838 1.19554 0.92048 0.95167 1.06534 1.20738 0.99081 0.90294 0.98482 1.18781 0.92463 0.93061 1.04067 1.18723 0.93367 0.91661 0.98097 1.20966 0.91101 0.99357 1.12084 1.21001 0.99208 0.92297 0.97375 1.21328 0.95292 0.95994 1.11512 1.17839 0.92704 0.92781 0.89830 1.19461 1.05690 0.92486 1.34290 0.92304 1.26647 0.96060 0.96217 0.97102 1.69720 1.20897 1.19697 1.37542 0.85707 0.79355 0.78619 0.78705 1.18015 1.20148 1.18368 1.21181 0.97605 0.92887 1.13972 1.20787 0.92403 0.99261 1.01072 1.19741 0.99629 0.89328 1.05850 1.18416 0.90962 0.88741 1.05068 0.90305 0.90213 0.86988 0.77074 0.81747 0.84427 0.84994 0.84519 0.87720 0.89708 0.88495 0.87206 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 11.02 127.77 1.41 2.21 16 2 N -0.49 -10.01 3.18 -539.14 -1.71 -11.73 16 3 C 0.06 1.07 11.28 83.00 0.94 2.01 16 4 C -0.22 -4.98 11.08 23.52 0.26 -4.72 16 5 C -0.13 -3.92 6.37 -20.21 -0.13 -4.04 16 6 C -0.07 -2.32 9.48 22.70 0.22 -2.11 16 7 C -0.08 -3.32 5.87 -20.04 -0.12 -3.44 16 8 C -0.02 -0.83 5.87 -20.09 -0.12 -0.95 16 9 C -0.22 -8.80 9.43 22.67 0.21 -8.59 16 10 C -0.08 -3.31 10.01 22.18 0.22 -3.09 16 11 C -0.22 -10.66 9.79 22.77 0.22 -10.44 16 12 C 0.07 3.82 5.09 -21.32 -0.11 3.71 16 13 C -0.49 -28.78 9.57 23.46 0.22 -28.55 16 14 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 15 C 0.05 3.02 5.41 85.25 0.46 3.49 16 16 N -0.85 -48.49 13.93 21.82 0.30 -48.18 16 17 Si 0.95 45.41 24.52 68.60 1.68 47.09 16 18 H -0.25 -11.42 6.03 99.48 0.60 -10.82 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.26 -12.95 6.85 99.48 0.68 -12.27 16 21 C -0.24 -12.10 6.53 22.95 0.15 -11.95 16 22 C -0.12 -4.48 9.34 22.26 0.21 -4.27 16 23 C -0.13 -3.95 9.87 22.10 0.22 -3.73 16 24 C 0.07 2.18 6.81 39.07 0.27 2.44 16 25 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 27 H 0.11 0.59 8.13 -2.39 -0.02 0.57 16 28 H 0.21 1.46 8.06 -2.92 -0.02 1.44 16 29 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.14 4.18 6.18 -2.91 -0.02 4.17 16 31 H 0.13 4.43 6.17 -2.91 -0.02 4.41 16 32 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 34 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 35 H 0.10 4.97 2.94 -2.91 -0.01 4.96 16 36 H 0.11 4.52 5.46 -2.91 -0.02 4.51 16 37 H 0.14 3.51 8.05 -2.91 -0.02 3.49 16 Total: -1.00 -70.15 306.16 5.77 -64.39 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.96 Total: 20.45 kcal Atomic # 6 Polarization: -76.56 SS G_CDS: 4.53 Total: -72.02 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -1.41 Total: -59.91 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.68 Total: 47.09 kcal Total: -70.15 5.77 -64.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239940803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.390 kcal (2) G-P(sol) polarization free energy of solvation -70.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds