Wall clock time and date at job start Mon Mar 30 2020 01:59:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46494 * 1
3 3 C 1.36690 * 125.07648 * 2 1
4 4 C 1.34469 * 109.95539 * 180.02562 * 3 2 1
5 5 C 1.46290 * 107.03598 * 359.97438 * 4 3 2
6 6 C 1.39948 * 133.81835 * 179.97438 * 5 4 3
7 7 C 1.36212 * 119.95878 * 180.09257 * 6 5 4
8 8 C 1.40222 * 120.37835 * 359.97438 * 7 6 5
9 9 C 1.47801 * 119.82427 * 180.02562 * 8 7 6
10 10 C 1.40047 * 119.88451 * 179.71920 * 9 8 7
11 11 C 1.36192 * 120.10713 * 179.75875 * 10 9 8
12 12 C 1.40965 * 119.88689 * 0.51602 * 11 10 9
13 13 C 1.40972 * 120.10764 * 179.71401 * 12 11 10
14 14 H 1.08000 * 119.99925 * 204.72935 * 13 12 11
15 15 C 1.39958 * 119.99887 * 24.73675 * 13 12 11
16 16 N 1.30826 * 120.00214 * 17.97186 * 15 13 12
17 17 Si 1.86794 * 119.99887 * 197.97821 * 15 13 12
18 18 H 1.48500 * 109.47268 * 359.97438 * 17 15 13
19 19 H 1.48502 * 109.47391 * 119.99497 * 17 15 13
20 20 H 1.48494 * 109.47260 * 239.99805 * 17 15 13
21 21 C 1.40962 * 119.78089 * 359.74215 * 12 11 10
22 22 C 1.36183 * 119.88827 * 359.97438 * 21 12 11
23 23 C 1.39298 * 120.34556 * 0.03121 * 8 7 6
24 24 C 1.37827 * 125.07612 * 180.02562 * 2 1 3
25 25 H 1.09008 * 109.46819 * 269.97519 * 1 2 3
26 26 H 1.08994 * 109.47286 * 29.97249 * 1 2 3
27 27 H 1.08996 * 109.47213 * 149.98011 * 1 2 3
28 28 H 1.07997 * 125.02320 * 359.97438 * 3 2 1
29 29 H 1.08005 * 126.48054 * 180.02562 * 4 3 2
30 30 H 1.07991 * 120.02162 * 0.37701 * 6 5 4
31 31 H 1.07992 * 119.80692 * 180.02562 * 7 6 5
32 32 H 1.07998 * 119.94885 * 359.97438 * 10 9 8
33 33 H 1.08002 * 120.05131 * 180.25117 * 11 10 9
34 34 H 0.97003 * 120.00126 * 180.02562 * 16 15 13
35 35 H 1.08005 * 120.05459 * 179.97438 * 21 12 11
36 36 H 1.07999 * 119.94712 * 180.02562 * 22 21 12
37 37 H 1.07994 * 120.17010 * 180.02562 * 23 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.2505 1.1187 0.0000
4 6 3.5486 0.7679 -0.0006
5 6 3.5975 -0.6942 -0.0003
6 6 4.6391 -1.6289 -0.0011
7 6 4.3571 -2.9615 -0.0025
8 6 3.0269 -3.4049 -0.0026
9 6 2.7350 -4.8538 -0.0036
10 6 1.4068 -5.2980 0.0023
11 6 1.1327 -6.6321 -0.0035
12 6 2.1884 -7.5662 -0.0044
13 6 1.9099 -8.9481 -0.0043
14 1 2.6363 -9.6453 0.3863
15 6 0.6921 -9.4165 -0.5106
16 7 -0.0295 -8.6527 -1.2900
17 14 0.0970 -11.1323 -0.0734
18 1 1.0887 -11.7886 0.8161
19 1 -1.2102 -11.0398 0.6253
20 1 -0.0605 -11.9328 -1.3141
21 6 3.5235 -7.1138 -0.0048
22 6 3.7873 -5.7778 -0.0048
23 6 1.9791 -2.4870 -0.0020
24 6 2.2570 -1.1280 -0.0005
25 1 -0.3633 -0.0004 1.0278
26 1 -0.3633 0.8902 -0.5134
27 1 -0.3633 -0.8898 -0.5141
28 1 1.8829 2.1341 -0.0004
29 1 4.3950 1.4387 -0.0003
30 1 5.6657 -1.2938 0.0040
31 1 5.1628 -3.6806 -0.0027
32 1 0.5987 -4.5816 0.0079
33 1 0.1081 -6.9736 -0.0031
34 1 -0.8737 -8.9773 -1.6406
35 1 4.3358 -7.8256 -0.0051
36 1 4.8098 -5.4301 -0.0056
37 1 0.9556 -2.8316 -0.0016
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001240574180.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:59:31
Heat of formation + Delta-G solvation = 62.087123 kcal
Electronic energy + Delta-G solvation = -19637.341786 eV
Core-core repulsion = 16729.724664 eV
Total energy + Delta-G solvation = -2907.617122 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 277.116 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-42.04714 -39.74757 -37.75540 -35.59995 -33.80718 -32.07647 -31.74494 -30.85857
-29.40639 -27.07559 -26.62090 -23.90313 -23.40557 -22.04817 -21.47571 -20.72526
-19.34367 -17.99641 -17.34627 -17.11014 -16.63971 -16.13987 -15.60448 -15.39029
-15.10528 -14.69944 -14.43330 -14.16696 -13.94341 -13.90704 -13.73909 -13.46022
-13.18566 -13.02985 -12.81823 -12.72232 -12.38222 -12.23805 -12.00754 -11.80260
-11.48756 -11.15969 -11.04655 -10.53477 -9.63610 -9.48799 -8.79380 -8.70212
-8.27700 -6.31784 0.03933 0.64914 1.13069 1.20143 1.37919 1.52461
1.54507 1.96306 2.03274 2.17912 2.66489 3.16921 3.78849 3.84010
3.96272 4.07293 4.11795 4.28803 4.41304 4.43765 4.50797 4.58041
4.68435 4.70282 4.83598 4.92515 5.02822 5.08371 5.14228 5.25132
5.27168 5.36404 5.63328 5.65657 5.75561 5.88359 5.94922 6.04473
6.07304 6.30345 6.31613 6.41427 6.55528 6.62512 6.85305 6.98244
8.24089
Molecular weight = 277.12amu
Principal moments of inertia in cm(-1)
A = 0.032609 B = 0.003706 C = 0.003362
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 858.451032 B = 7553.043183 C = 8327.145944
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.073 3.927
2 N -0.496 5.496
3 C 0.049 3.951
4 C -0.221 4.221
5 C -0.152 4.152
6 C -0.070 4.070
7 C -0.164 4.164
8 C 0.007 3.993
9 C -0.196 4.196
10 C -0.085 4.085
11 C -0.193 4.193
12 C 0.086 3.914
13 C -0.486 4.486
14 H 0.081 0.919
15 C 0.034 3.966
16 N -0.815 5.815
17 Si 0.986 3.014
18 H -0.256 1.256
19 H -0.263 1.263
20 H -0.264 1.264
21 C -0.244 4.244
22 C -0.068 4.068
23 C -0.166 4.166
24 C 0.083 3.917
25 H 0.075 0.925
26 H 0.112 0.888
27 H 0.070 0.930
28 H 0.207 0.793
29 H 0.166 0.834
30 H 0.144 0.856
31 H 0.129 0.871
32 H 0.104 0.896
33 H 0.103 0.897
34 H 0.291 0.709
35 H 0.104 0.896
36 H 0.123 0.877
37 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.456 15.236 1.808 15.350
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 N -0.180 5.180
3 C -0.076 4.076
4 C -0.246 4.246
5 C -0.156 4.156
6 C -0.088 4.088
7 C -0.183 4.183
8 C 0.006 3.994
9 C -0.197 4.197
10 C -0.104 4.104
11 C -0.213 4.213
12 C 0.084 3.916
13 C -0.515 4.515
14 H 0.100 0.900
15 C -0.182 4.182
16 N -0.440 5.440
17 Si 0.806 3.194
18 H -0.180 1.180
19 H -0.188 1.188
20 H -0.189 1.189
21 C -0.264 4.264
22 C -0.086 4.086
23 C -0.186 4.186
24 C -0.023 4.023
25 H 0.094 0.906
26 H 0.131 0.869
27 H 0.089 0.911
28 H 0.224 0.776
29 H 0.183 0.817
30 H 0.161 0.839
31 H 0.147 0.853
32 H 0.122 0.878
33 H 0.121 0.879
34 H 0.102 0.898
35 H 0.122 0.878
36 H 0.141 0.859
37 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -0.132 15.281 1.654 15.371
hybrid contribution -0.539 -1.101 -0.032 1.226
sum -0.672 14.180 1.623 14.288
Atomic orbital electron populations
1.22138 0.75716 1.05158 1.03775 1.44106 1.06970 1.03940 1.62982
1.22435 0.90097 0.91996 1.03046 1.21968 0.97326 0.91733 1.13542
1.19659 0.92059 0.95085 1.08818 1.20401 0.98781 0.91341 0.98317
1.20878 0.95482 0.96161 1.05747 1.18632 0.93127 0.91342 0.96287
1.18410 0.93086 0.91297 1.16919 1.20732 0.95455 0.95133 0.99052
1.20944 0.98962 0.92490 1.08875 1.18076 0.91829 0.94124 0.87601
1.19941 1.02301 0.93072 1.36142 0.90046 1.26874 0.95404 1.04243
0.91703 1.69888 1.12462 1.39781 1.21834 0.85095 0.78909 0.76048
0.79310 1.17952 1.18757 1.18862 1.20901 0.95832 0.95372 1.14274
1.20720 0.97883 0.92598 0.97439 1.19998 0.98816 0.89474 1.10347
1.18296 0.91280 0.88297 1.04442 0.90595 0.86926 0.91111 0.77585
0.81655 0.83858 0.85311 0.87792 0.87909 0.89774 0.87823 0.85937
0.87098
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.29 11.02 127.77 1.41 2.70 16
2 N -0.50 -12.64 3.18 -539.27 -1.71 -14.35 16
3 C 0.05 1.00 11.29 83.07 0.94 1.94 16
4 C -0.22 -5.32 11.08 23.50 0.26 -5.06 16
5 C -0.15 -4.83 6.37 -20.12 -0.13 -4.96 16
6 C -0.07 -2.20 10.04 22.21 0.22 -1.98 16
7 C -0.16 -5.87 9.35 22.28 0.21 -5.67 16
8 C 0.01 0.31 5.88 -20.01 -0.12 0.19 16
9 C -0.20 -9.14 5.90 -19.87 -0.12 -9.26 16
10 C -0.09 -4.20 9.35 22.23 0.21 -3.99 16
11 C -0.19 -10.45 8.63 22.46 0.19 -10.26 16
12 C 0.09 4.74 5.57 -21.27 -0.12 4.62 16
13 C -0.49 -26.15 9.03 23.36 0.21 -25.94 16
14 H 0.08 4.19 7.91 -2.91 -0.02 4.17 16
15 C 0.03 1.70 5.13 85.26 0.44 2.14 16
16 N -0.81 -42.30 10.96 21.83 0.24 -42.06 16
17 Si 0.99 37.42 29.60 68.60 2.03 39.45 16
18 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16
19 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16
20 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16
21 C -0.24 -12.27 9.73 22.46 0.22 -12.05 16
22 C -0.07 -3.15 9.35 22.23 0.21 -2.94 16
23 C -0.17 -6.33 9.32 22.64 0.21 -6.12 16
24 C 0.08 2.79 6.80 38.96 0.26 3.06 16
25 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16
26 H 0.11 1.20 8.13 -2.39 -0.02 1.18 16
27 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16
28 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16
29 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16
30 H 0.14 3.53 8.06 -2.92 -0.02 3.51 16
31 H 0.13 4.23 6.13 -2.91 -0.02 4.22 16
32 H 0.10 4.64 6.15 -2.91 -0.02 4.62 16
33 H 0.10 5.73 6.16 -2.91 -0.02 5.71 16
34 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16
35 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16
36 H 0.12 4.79 6.14 -2.91 -0.02 4.78 16
37 H 0.11 4.16 6.14 -2.91 -0.02 4.14 16
Total: -1.00 -65.67 312.42 6.15 -59.52
By element:
Atomic # 1 Polarization: 29.94 SS G_CDS: 1.09 Total: 31.02 kcal
Atomic # 6 Polarization: -78.09 SS G_CDS: 4.51 Total: -73.59 kcal
Atomic # 7 Polarization: -54.93 SS G_CDS: -1.47 Total: -56.41 kcal
Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal
Total: -65.67 6.15 -59.52 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001240574180.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.604 kcal
(2) G-P(sol) polarization free energy of solvation -65.667 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.937 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.517 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.087 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds