Wall clock time and date at job start Mon Mar 30 2020 01:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36690 * 125.07648 * 2 1 4 4 C 1.34469 * 109.95539 * 180.02562 * 3 2 1 5 5 C 1.46290 * 107.03598 * 359.97438 * 4 3 2 6 6 C 1.39948 * 133.81835 * 179.97438 * 5 4 3 7 7 C 1.36212 * 119.95878 * 180.09257 * 6 5 4 8 8 C 1.40222 * 120.37835 * 359.97438 * 7 6 5 9 9 C 1.47801 * 119.82427 * 180.02562 * 8 7 6 10 10 C 1.40047 * 119.88451 * 179.71920 * 9 8 7 11 11 C 1.36192 * 120.10713 * 179.75875 * 10 9 8 12 12 C 1.40965 * 119.88689 * 0.51602 * 11 10 9 13 13 C 1.40972 * 120.10764 * 179.71401 * 12 11 10 14 14 H 1.08000 * 119.99925 * 204.72935 * 13 12 11 15 15 C 1.39958 * 119.99887 * 24.73675 * 13 12 11 16 16 N 1.30826 * 120.00214 * 17.97186 * 15 13 12 17 17 Si 1.86794 * 119.99887 * 197.97821 * 15 13 12 18 18 H 1.48500 * 109.47268 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47391 * 119.99497 * 17 15 13 20 20 H 1.48494 * 109.47260 * 239.99805 * 17 15 13 21 21 C 1.40962 * 119.78089 * 359.74215 * 12 11 10 22 22 C 1.36183 * 119.88827 * 359.97438 * 21 12 11 23 23 C 1.39298 * 120.34556 * 0.03121 * 8 7 6 24 24 C 1.37827 * 125.07612 * 180.02562 * 2 1 3 25 25 H 1.09008 * 109.46819 * 269.97519 * 1 2 3 26 26 H 1.08994 * 109.47286 * 29.97249 * 1 2 3 27 27 H 1.08996 * 109.47213 * 149.98011 * 1 2 3 28 28 H 1.07997 * 125.02320 * 359.97438 * 3 2 1 29 29 H 1.08005 * 126.48054 * 180.02562 * 4 3 2 30 30 H 1.07991 * 120.02162 * 0.37701 * 6 5 4 31 31 H 1.07992 * 119.80692 * 180.02562 * 7 6 5 32 32 H 1.07998 * 119.94885 * 359.97438 * 10 9 8 33 33 H 1.08002 * 120.05131 * 180.25117 * 11 10 9 34 34 H 0.97003 * 120.00126 * 180.02562 * 16 15 13 35 35 H 1.08005 * 120.05459 * 179.97438 * 21 12 11 36 36 H 1.07999 * 119.94712 * 180.02562 * 22 21 12 37 37 H 1.07994 * 120.17010 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2505 1.1187 0.0000 4 6 3.5486 0.7679 -0.0006 5 6 3.5975 -0.6942 -0.0003 6 6 4.6391 -1.6289 -0.0011 7 6 4.3571 -2.9615 -0.0025 8 6 3.0269 -3.4049 -0.0026 9 6 2.7350 -4.8538 -0.0036 10 6 1.4068 -5.2980 0.0023 11 6 1.1327 -6.6321 -0.0035 12 6 2.1884 -7.5662 -0.0044 13 6 1.9099 -8.9481 -0.0043 14 1 2.6363 -9.6453 0.3863 15 6 0.6921 -9.4165 -0.5106 16 7 -0.0295 -8.6527 -1.2900 17 14 0.0970 -11.1323 -0.0734 18 1 1.0887 -11.7886 0.8161 19 1 -1.2102 -11.0398 0.6253 20 1 -0.0605 -11.9328 -1.3141 21 6 3.5235 -7.1138 -0.0048 22 6 3.7873 -5.7778 -0.0048 23 6 1.9791 -2.4870 -0.0020 24 6 2.2570 -1.1280 -0.0005 25 1 -0.3633 -0.0004 1.0278 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5141 28 1 1.8829 2.1341 -0.0004 29 1 4.3950 1.4387 -0.0003 30 1 5.6657 -1.2938 0.0040 31 1 5.1628 -3.6806 -0.0027 32 1 0.5987 -4.5816 0.0079 33 1 0.1081 -6.9736 -0.0031 34 1 -0.8737 -8.9773 -1.6406 35 1 4.3358 -7.8256 -0.0051 36 1 4.8098 -5.4301 -0.0056 37 1 0.9556 -2.8316 -0.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240574180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:31 Heat of formation + Delta-G solvation = 62.087123 kcal Electronic energy + Delta-G solvation = -19637.341786 eV Core-core repulsion = 16729.724664 eV Total energy + Delta-G solvation = -2907.617122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.04714 -39.74757 -37.75540 -35.59995 -33.80718 -32.07647 -31.74494 -30.85857 -29.40639 -27.07559 -26.62090 -23.90313 -23.40557 -22.04817 -21.47571 -20.72526 -19.34367 -17.99641 -17.34627 -17.11014 -16.63971 -16.13987 -15.60448 -15.39029 -15.10528 -14.69944 -14.43330 -14.16696 -13.94341 -13.90704 -13.73909 -13.46022 -13.18566 -13.02985 -12.81823 -12.72232 -12.38222 -12.23805 -12.00754 -11.80260 -11.48756 -11.15969 -11.04655 -10.53477 -9.63610 -9.48799 -8.79380 -8.70212 -8.27700 -6.31784 0.03933 0.64914 1.13069 1.20143 1.37919 1.52461 1.54507 1.96306 2.03274 2.17912 2.66489 3.16921 3.78849 3.84010 3.96272 4.07293 4.11795 4.28803 4.41304 4.43765 4.50797 4.58041 4.68435 4.70282 4.83598 4.92515 5.02822 5.08371 5.14228 5.25132 5.27168 5.36404 5.63328 5.65657 5.75561 5.88359 5.94922 6.04473 6.07304 6.30345 6.31613 6.41427 6.55528 6.62512 6.85305 6.98244 8.24089 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032609 B = 0.003706 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.451032 B = 7553.043183 C = 8327.145944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.496 5.496 3 C 0.049 3.951 4 C -0.221 4.221 5 C -0.152 4.152 6 C -0.070 4.070 7 C -0.164 4.164 8 C 0.007 3.993 9 C -0.196 4.196 10 C -0.085 4.085 11 C -0.193 4.193 12 C 0.086 3.914 13 C -0.486 4.486 14 H 0.081 0.919 15 C 0.034 3.966 16 N -0.815 5.815 17 Si 0.986 3.014 18 H -0.256 1.256 19 H -0.263 1.263 20 H -0.264 1.264 21 C -0.244 4.244 22 C -0.068 4.068 23 C -0.166 4.166 24 C 0.083 3.917 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.207 0.793 29 H 0.166 0.834 30 H 0.144 0.856 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.291 0.709 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 15.236 1.808 15.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.180 5.180 3 C -0.076 4.076 4 C -0.246 4.246 5 C -0.156 4.156 6 C -0.088 4.088 7 C -0.183 4.183 8 C 0.006 3.994 9 C -0.197 4.197 10 C -0.104 4.104 11 C -0.213 4.213 12 C 0.084 3.916 13 C -0.515 4.515 14 H 0.100 0.900 15 C -0.182 4.182 16 N -0.440 5.440 17 Si 0.806 3.194 18 H -0.180 1.180 19 H -0.188 1.188 20 H -0.189 1.189 21 C -0.264 4.264 22 C -0.086 4.086 23 C -0.186 4.186 24 C -0.023 4.023 25 H 0.094 0.906 26 H 0.131 0.869 27 H 0.089 0.911 28 H 0.224 0.776 29 H 0.183 0.817 30 H 0.161 0.839 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.141 0.859 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.132 15.281 1.654 15.371 hybrid contribution -0.539 -1.101 -0.032 1.226 sum -0.672 14.180 1.623 14.288 Atomic orbital electron populations 1.22138 0.75716 1.05158 1.03775 1.44106 1.06970 1.03940 1.62982 1.22435 0.90097 0.91996 1.03046 1.21968 0.97326 0.91733 1.13542 1.19659 0.92059 0.95085 1.08818 1.20401 0.98781 0.91341 0.98317 1.20878 0.95482 0.96161 1.05747 1.18632 0.93127 0.91342 0.96287 1.18410 0.93086 0.91297 1.16919 1.20732 0.95455 0.95133 0.99052 1.20944 0.98962 0.92490 1.08875 1.18076 0.91829 0.94124 0.87601 1.19941 1.02301 0.93072 1.36142 0.90046 1.26874 0.95404 1.04243 0.91703 1.69888 1.12462 1.39781 1.21834 0.85095 0.78909 0.76048 0.79310 1.17952 1.18757 1.18862 1.20901 0.95832 0.95372 1.14274 1.20720 0.97883 0.92598 0.97439 1.19998 0.98816 0.89474 1.10347 1.18296 0.91280 0.88297 1.04442 0.90595 0.86926 0.91111 0.77585 0.81655 0.83858 0.85311 0.87792 0.87909 0.89774 0.87823 0.85937 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 11.02 127.77 1.41 2.70 16 2 N -0.50 -12.64 3.18 -539.27 -1.71 -14.35 16 3 C 0.05 1.00 11.29 83.07 0.94 1.94 16 4 C -0.22 -5.32 11.08 23.50 0.26 -5.06 16 5 C -0.15 -4.83 6.37 -20.12 -0.13 -4.96 16 6 C -0.07 -2.20 10.04 22.21 0.22 -1.98 16 7 C -0.16 -5.87 9.35 22.28 0.21 -5.67 16 8 C 0.01 0.31 5.88 -20.01 -0.12 0.19 16 9 C -0.20 -9.14 5.90 -19.87 -0.12 -9.26 16 10 C -0.09 -4.20 9.35 22.23 0.21 -3.99 16 11 C -0.19 -10.45 8.63 22.46 0.19 -10.26 16 12 C 0.09 4.74 5.57 -21.27 -0.12 4.62 16 13 C -0.49 -26.15 9.03 23.36 0.21 -25.94 16 14 H 0.08 4.19 7.91 -2.91 -0.02 4.17 16 15 C 0.03 1.70 5.13 85.26 0.44 2.14 16 16 N -0.81 -42.30 10.96 21.83 0.24 -42.06 16 17 Si 0.99 37.42 29.60 68.60 2.03 39.45 16 18 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 20 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 21 C -0.24 -12.27 9.73 22.46 0.22 -12.05 16 22 C -0.07 -3.15 9.35 22.23 0.21 -2.94 16 23 C -0.17 -6.33 9.32 22.64 0.21 -6.12 16 24 C 0.08 2.79 6.80 38.96 0.26 3.06 16 25 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.11 1.20 8.13 -2.39 -0.02 1.18 16 27 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 28 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.14 3.53 8.06 -2.92 -0.02 3.51 16 31 H 0.13 4.23 6.13 -2.91 -0.02 4.22 16 32 H 0.10 4.64 6.15 -2.91 -0.02 4.62 16 33 H 0.10 5.73 6.16 -2.91 -0.02 5.71 16 34 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 35 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 36 H 0.12 4.79 6.14 -2.91 -0.02 4.78 16 37 H 0.11 4.16 6.14 -2.91 -0.02 4.14 16 Total: -1.00 -65.67 312.42 6.15 -59.52 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 1.09 Total: 31.02 kcal Atomic # 6 Polarization: -78.09 SS G_CDS: 4.51 Total: -73.59 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -1.47 Total: -56.41 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -65.67 6.15 -59.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240574180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.604 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds